CB304394

Overview
NameCB304394
Unique NameCB304394
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length586
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13846 contig Csv1_Contig13846:1..560. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: BIP1_TOBAC (Luminal-binding protein 1 (Fragment) OS=Nicotiana tabacum GN=BIP1 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.823e-28
Identity = 59/115 (51.30%), Postives = 89/115 (77.39%), Query Frame = -3
Query:  246 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKD-EKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQ-GGGADAGASMDED 584
            EEIE+MV+EAE++  ED + K++++A+N+LE Y YNM+N I D +K++ KL + +K+KIE A +EA++WLD NQ AE +++E+K+KE+E ICNPII  +YQ  GGA  G S +E+
Sbjct:  169 EEIERMVREAEEFAEEDKKVKERIDARNSLETYVYNMKNQINDKDKLADKLESDEKEKIETATKEALEWLDDNQSAEKEDYEEKLKEVEAICNPIITAVYQRSGGAPGGGSSEEE 283          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HSP71_ORYLA (Heat shock 70 kDa protein 1 OS=Oryzias latipes PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.381e-28
Identity = 53/102 (51.96%), Postives = 81/102 (79.41%), Query Frame = -3
Query:  279 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGG 584
            E+IE+MVQEAEKYKAED++ + K+ AKN+LE+ A+N++++ +D+ +  K+   D+K++ +  +E I WL+ NQLA+ DEF+ K KELE +CNPII+K+YQGG
Sbjct:  515 EDIERMVQEAEKYKAEDEQQRDKIAAKNSLESLAFNLKSSAQDDSLKDKISQEDRKRVVEKCDETIAWLENNQLADKDEFQHKQKELEKVCNPIISKLYQGG 616          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: BIP2_TOBAC (Luminal-binding protein 2 (Fragment) OS=Nicotiana tabacum GN=BIP2 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.381e-28
Identity = 58/115 (50.43%), Postives = 89/115 (77.39%), Query Frame = -3
Query:  246 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKD-EKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQ-GGGADAGASMDED 584
            EEIE+MV+EAE++  ED + K++++A+N+LE Y YNM+N I D +K++ KL + +K+KIE A +EA++WLD NQ AE +++E+K+KE+E +CNPII  +YQ  GGA  G S +E+
Sbjct:  169 EEIERMVREAEEFAEEDKKVKERIDARNSLETYVYNMKNQINDKDKLADKLESDEKEKIETATKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPGGGSSEEE 283          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: BIP5_TOBAC (Luminal-binding protein 5 OS=Nicotiana tabacum GN=BIP5 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.304e-28
Identity = 58/115 (50.43%), Postives = 89/115 (77.39%), Query Frame = -3
Query:  246 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKD-EKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQ-GGGADAGASMDED 584
            EEIE+MV+EAE++  ED + K++++A+N+LE Y YNMRN I D +K++ KL + +K+KIE A +EA++WLD NQ AE +++++K+KE+E +CNPII  +YQ  GGA  GAS + +
Sbjct:  545 EEIERMVKEAEEFAEEDKKVKERIDARNSLETYVYNMRNQINDKDKLADKLESDEKEKIETATKEALEWLDDNQSAEKEDYDEKLKEVEAVCNPIITAVYQRSGGAPGGASEESN 659          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HSP70_NEUCR (Heat shock 70 kDa protein OS=Neurospora crassa GN=hsps-1 PE=2 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 6.927e-28
Identity = 56/107 (52.34%), Postives = 77/107 (71.96%), Query Frame = -3
Query:  264 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGGGADAG 584
            EEIE+M+ EAEK+K ED+   K+V AKN LE+YAY++RNT+ D K+  KL  ADK+K++  I++ + WLD NQ A  +E+E++ KELE I NPI+ K Y  GGA  G
Sbjct:  512 EEIERMLAEAEKFKEEDEAEAKRVAAKNGLESYAYSLRNTLSDSKVDEKLDAADKEKLKSEIDKIVAWLDENQQATREEYEERQKELEAIANPIMMKFYGAGGAPGG 618          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HSP70_XENLA (Heat shock 70 kDa protein OS=Xenopus laevis PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 9.046e-28
Identity = 53/102 (51.96%), Postives = 78/102 (76.47%), Query Frame = -3
Query:  279 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGG 584
            E+IEKMVQEAEKYKA+DD  +++V+AKNALE+YA+N+++ ++DE +  K+   DK+ I +   + I WL+ NQLAE +E+  + K+LE +C PII K+YQGG
Sbjct:  514 EDIEKMVQEAEKYKADDDAQRERVDAKNALESYAFNLKSMVEDENVKGKISDEDKRTISEKCTQVISWLENNQLAEKEEYAFQQKDLEKVCQPIITKLYQGG 615          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HSP70_THEPA (Heat shock 70 kDa protein OS=Theileria parva GN=TP02_0148 PE=2 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 9.046e-28
Identity = 56/111 (50.45%), Postives = 83/111 (74.77%), Query Frame = -3
Query:  255 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGGGA-DAGASM 584
            EEI++MV+EAEKYK ED++ +K VE+K+ LENY Y+M+NT+ ++++  KL   +     + I EA++W++ NQLAE DEFEDK+K +E +CNP++ K+YQ GGA  AG  M
Sbjct:  514 EEIDRMVEEAEKYKEEDEKRRKCVESKHKLENYCYSMKNTLSEDQVKQKLGADEVDNALNTITEALKWVETNQLAEHDEFEDKLKHVEGVCNPLVTKLYQSGGAPGAGPDM 624          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: BIP_SPIOL (Luminal-binding protein OS=Spinacia oleracea GN=HSC70 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 9.046e-28
Identity = 55/110 (50.00%), Postives = 86/110 (78.18%), Query Frame = -3
Query:  258 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKD-EKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGGGADAGAS 584
            EEIE+MV+EAE++  ED + K+K++A+N+LE Y YNM+N I D +K++ KL + +K+KIE A++EA++WLD NQ AE +++++K+KE+E +CNPII  +YQ  G  +G S
Sbjct:  545 EEIERMVREAEEFAEEDKKVKEKIDARNSLETYIYNMKNQISDADKLADKLESDEKEKIEGAVKEALEWLDDNQSAEKEDYDEKLKEVEAVCNPIITAVYQRSGGPSGES 654          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HSP71_PARBA (Heat shock 70 kDa protein 1 OS=Paracoccidioides brasiliensis (strain ATCC MYA-826 / Pb01) GN=HSP70-1 PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.015e-27
Identity = 55/104 (52.88%), Postives = 75/104 (72.12%), Query Frame = -3
Query:  273 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGGGA 584
            EEIE+M+ EAEKYKAED+    ++ AKN LE+YAY++RNTI D K+  KL  +DK+K++  I++ + WLD NQ A  +EFE + KELE + NPI+ K Y  GGA
Sbjct:  510 EEIERMLAEAEKYKAEDEAEASRISAKNGLESYAYSLRNTISDSKVDEKLDASDKEKLKTEIDKTVSWLDENQTATKEEFEAQQKELESVANPIMMKFYGAGGA 613          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HSP70_ALTAL (Heat shock 70 kDa protein (Fragment) OS=Alternaria alternata GN=HSP70 PE=1 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 2.015e-27
Identity = 55/103 (53.40%), Postives = 74/103 (71.84%), Query Frame = -3
Query:  276 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGGG 584
            EEIE+M+ EAEKYKAED+    ++ AKNALE+YAY++RNT+ D K+  KL   DK+K+   I++ +QWLD NQ A  DE+E + KELE + NPI+ K Y  GG
Sbjct:   17 EEIERMLAEAEKYKAEDEAEAARISAKNALESYAYSLRNTLSDSKVDEKLDAGDKQKLTAEIDKTVQWLDDNQTATKDEYESQQKELEGVANPIMMKFYGAGG 119          
The following BLAST results are available for this feature:
BLAST of CB304394 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
BIP1_TOBAC1.823e-2851.30Luminal-binding protein 1 (Fragment) OS=Nicotiana ... [more]
HSP71_ORYLA2.381e-2851.96Heat shock 70 kDa protein 1 OS=Oryzias latipes PE=... [more]
BIP2_TOBAC2.381e-2850.43Luminal-binding protein 2 (Fragment) OS=Nicotiana ... [more]
BIP5_TOBAC5.304e-2850.43Luminal-binding protein 5 OS=Nicotiana tabacum GN=... [more]
HSP70_NEUCR6.927e-2852.34Heat shock 70 kDa protein OS=Neurospora crassa GN=... [more]
HSP70_XENLA9.046e-2851.96Heat shock 70 kDa protein OS=Xenopus laevis PE=2 S... [more]
HSP70_THEPA9.046e-2850.45Heat shock 70 kDa protein OS=Theileria parva GN=TP... [more]
BIP_SPIOL9.046e-2850.00Luminal-binding protein OS=Spinacia oleracea GN=HS... [more]
HSP71_PARBA2.015e-2752.88Heat shock 70 kDa protein 1 OS=Paracoccidioides br... [more]
HSP70_ALTAL2.015e-2753.40Heat shock 70 kDa protein (Fragment) OS=Alternaria... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIIaR_B11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIIaR_B11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304394 ID=CB304394; Name=CB304394; organism=Citrus sinensis; type=EST; length=586bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCTGAAGGAAAAATAAGACA
TTGCTTAAAAACATAATATCTTTATGCATACACCAGGAAACAGTATTTAC
ATGTAACAGAAGCAGGAAAAGGAAGAAAAGATCACACCCCCAACTCAACC
CCTAATCATTAAACAACATTAAGCATAAATCCTCAAATTTAATCCACCTC
CTCAATCTTGGGGCCAGCACCGCTACCAGCACCAGCAGAAGGACCATCCT
CATCCATACTTGCACCAGCATCAGCTCCACCTCCTTGGTACATCTTGGCA
ATAATTGGGTTGCAGATGCACTCCAGCTCTTTCATCTTATCTTCAAACTC
ATCTGCCTCTGCGAGCTGGTTCCCGTCAAGCCATTGGATGGCCTCCTCAA
TGGCATCTTCAATTTTCTTCTTGTCAGCAGTGGGAAGCTTTGCGCTGATC
TTTTCATCCTTGATTGTGTTTCTCATGTTGTAAGCATAATTCTCAAGAGC
ATTCTTGGCCTCCACCTTTTTCTTGTGCTCGTCATCCTCGGCCTTGTATT
TTTCTGCCTCTTGTACCATCTTCTCTATCTCCTCCT
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