CB304466

Overview
NameCB304466
Unique NameCB304466
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2177 contig Csv1_Contig2177:103..785. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304466 vs. ExPASy Swiss-Prot
Match: CML43_ARATH (Probable calcium-binding protein CML43 OS=Arabidopsis thaliana GN=CML43 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.494e-12
Identity = 35/71 (49.30%), Postives = 51/71 (71.83%), Query Frame = -1
Query:   87 EVKDAFDVFDENKDGFIDALELQRVLCILGMKEGFQLENCKKMIKTFDENGDGRIDFKEFVKFMESSFVES 299
            ++++AF+VFDE+ DGFI A+ELQ+VL  LG+ E  ++E  +KMI + D N DGR+DF EF   M++  V S
Sbjct:  111 DLEEAFNVFDEDGDGFISAVELQKVLKKLGLPEAGEIEQVEKMIVSVDSNHDGRVDFFEFKNMMQTVVVPS 181          
BLAST of CB304466 vs. ExPASy Swiss-Prot
Match: CAST_SOLTU (Calcium-binding protein CAST OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.494e-12
Identity = 40/90 (44.44%), Postives = 58/90 (64.44%), Query Frame = -1
Query:   87 GSRELSRLFEEKEPSLEE--VKDAFDVFDENKDGFIDALELQRVLCILGMKEGFQLENCKKMIKTFDENGDGRIDFKEFVKFMESSFVES 350
            GS+   +L    +P+ +E  +K+AFDVFDEN DGFI A ELQ VL  LG+ EG +++  + MI + +++ DGR+DF EF   M +  V S
Sbjct:  110 GSKCEDKLGLNPDPAQDESDLKEAFDVFDENGDGFISAKELQVVLEKLGLPEGSEIDRVEMMISSVEQDHDGRVDFFEFKDMMRTVIVPS 199          
BLAST of CB304466 vs. ExPASy Swiss-Prot
Match: CML22_ORYSJ (Probable calcium-binding protein CML22 OS=Oryza sativa subsp. japonica GN=CML22 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.258e-12
Identity = 35/75 (46.67%), Postives = 49/75 (65.33%), Query Frame = -1
Query:  108 RLFEEKEPSLEEVKDAFDVFDENKDGFIDALELQRVLCILGMKEGFQLENCKKMIKTFDENGDGRIDFKEFVKFM 332
            R  EE+E    ++++AF VFD N DG+I   EL  VL  LG+K+G   E C++MI   D +GDGR+DF EF++ M
Sbjct:  167 RAKEEEEEEDGDMREAFRVFDANGDGYITVDELGAVLASLGLKQGRTAEECRRMIGQVDRDGDGRVDFHEFLQMM 241          
BLAST of CB304466 vs. ExPASy Swiss-Prot
Match: CML42_ARATH (Calcium-binding protein CML42 OS=Arabidopsis thaliana GN=CML42 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.255e-12
Identity = 36/71 (50.70%), Postives = 47/71 (66.20%), Query Frame = -1
Query:   87 EVKDAFDVFDENKDGFIDALELQRVLCILGMKEGFQLENCKKMIKTFDENGDGRIDFKEFVKFMESSFVES 299
            ++ +AF VFDEN DGFI A ELQ VL  LG+ EG ++E  +KMI + D N DGR+DF EF   M +  + S
Sbjct:  120 DLAEAFKVFDENGDGFISARELQTVLKKLGLPEGGEMERVEKMIVSVDRNQDGRVDFFEFKNMMRTVVIPS 190          
BLAST of CB304466 vs. ExPASy Swiss-Prot
Match: CML17_ORYSJ (Probable calcium-binding protein CML17 OS=Oryza sativa subsp. japonica GN=CML17 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.758e-11
Identity = 33/63 (52.38%), Postives = 43/63 (68.25%), Query Frame = -1
Query:  108 VKDAFDVFDENKDGFIDALELQRVLCILGMKEGFQLENCKKMIKTFDENGDGRIDFKEFVKFM 296
            +++AFDVFD N DGFI   EL  VL  LG+K+G   E+C +MI   D +GDGR+DF EF + M
Sbjct:   93 MREAFDVFDRNGDGFITVDELGAVLASLGIKQGRTAEDCGRMIGQVDRDGDGRVDFLEFKQMM 155          
The following BLAST results are available for this feature:
BLAST of CB304466 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
CML43_ARATH2.494e-1249.30Probable calcium-binding protein CML43 OS=Arabidop... [more]
CAST_SOLTU2.494e-1244.44Calcium-binding protein CAST OS=Solanum tuberosum ... [more]
CML22_ORYSJ3.258e-1246.67Probable calcium-binding protein CML22 OS=Oryza sa... [more]
CML42_ARATH4.255e-1250.70Calcium-binding protein CML42 OS=Arabidopsis thali... [more]
CML17_ORYSJ2.758e-1152.38Probable calcium-binding protein CML17 OS=Oryza sa... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIaR_C02 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIaR_C02 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304466 ID=CB304466; Name=CB304466; organism=Citrus sinensis; type=EST; length=683bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTAAGGAATAAGGGAAACAC
CAAGCTCTGTGTTACTTATATTTCATAAATTAATTAGGATTCAACAAAGC
TACTCTCCATAAACTTTACAAATTCCTTAAAATCTATCCTTCCATCGCCG
TTTTCATCAAAAGTTTTGATCATCTTCTTGCAGTTCTCCAGCTGGAATCC
CTCTTTCATGCCCAAAATACAGAGCACTCTCTGCAACTCCAGGGCATCAA
TAAAGCCATCTTTGTTCTCATCAAACACATCAAAAGCATCCTTCACCTCC
TCCAAGCTTGGTTCTTTCTCCTCAAACAACCTGGAAAGCTCTCTGGAACC
GAGCTTCTGCGGAAGCTCCTCGCCTTCGGGGCTGCAAAAAAGTGTCAAGT
TTGTCATCACCGTCTCCACTTGATCTCTAGAGAGACTCTCATCGTCATGT
TTCTTCTCATTGCAGGAAGCTTGTTTGCTGAACAACTCAAAATCTTGGCT
CTTCTCATCCCAATTTCTTGACTCGCAAGACTCAAATTGGGATTGGACAA
AAGACCGATGGCTCAAGAAAAAAGTGTTAACGCAACTGATCATTGTTAGA
AACTTATGAAACAAAAAGCCTTGAATGTATGCAAAGAATTGATTAAAGGG
GTGTTGGGTCTTGGTTCCTGGTGATTTTTGCAT
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