CB304514

Overview
NameCB304514
Unique NameCB304514
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length604
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4200 contig Csv1_Contig4200:340..943. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304514 vs. ExPASy Swiss-Prot
Match: RL10A_HUMAN (60S ribosomal protein L10a OS=Homo sapiens GN=RPL10A PE=1 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 1.235e-38
Identity = 72/111 (64.86%), Postives = 96/111 (86.49%), Query Frame = -2
Query:  211 YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQKSLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 543
            Y AFLASES+IKQIPR+LGPGLNKAGKFP+L+TH +++ +KV+E K+T+KFQ+KKVLC+ VAVG++ M + ++  N+ ++VNFLVSLLKKNWQNVR LY+KSTMG   R++
Sbjct:  107 YDAFLASESLIKQIPRILGPGLNKAGKFPSLLTHNENMVAKVDEVKSTIKFQMKKVLCLAVAVGHVKMTDDELVYNIHLAVNFLVSLLKKNWQNVRALYIKSTMGKPQRLY 217          
BLAST of CB304514 vs. ExPASy Swiss-Prot
Match: RL10A_BOVIN (60S ribosomal protein L10a OS=Bos taurus GN=RPL10A PE=2 SV=3)

HSP 1 Score: 159.458 bits (402), Expect = 1.235e-38
Identity = 72/111 (64.86%), Postives = 96/111 (86.49%), Query Frame = -2
Query:  211 YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQKSLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 543
            Y AFLASES+IKQIPR+LGPGLNKAGKFP+L+TH +++ +KV+E K+T+KFQ+KKVLC+ VAVG++ M + ++  N+ ++VNFLVSLLKKNWQNVR LY+KSTMG   R++
Sbjct:  107 YDAFLASESLIKQIPRILGPGLNKAGKFPSLLTHNENMVAKVDEVKSTIKFQMKKVLCLAVAVGHVKMTDDELVYNIHLAVNFLVSLLKKNWQNVRALYIKSTMGKPQRLY 217          
BLAST of CB304514 vs. ExPASy Swiss-Prot
Match: RL10A_DICDI (60S ribosomal protein L10a OS=Dictyostelium discoideum GN=rpl10a PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.613e-38
Identity = 68/111 (61.26%), Postives = 96/111 (86.49%), Query Frame = -2
Query:  211 YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQKSLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 543
            Y AFLASES+++Q+P+LLGPGLNK GKFPTL+TH + + SK+N+ K+TVKFQLKKVLC+ VAVG++ + E+++  N+  S+NFLVSLLKK WQN++ LY+K++MGPS+R++
Sbjct:  107 YDAFLASESILRQVPKLLGPGLNKVGKFPTLLTHSEDMASKINDVKSTVKFQLKKVLCLAVAVGHIELTEREVATNIIQSINFLVSLLKKGWQNIKTLYVKTSMGPSHRVY 217          
BLAST of CB304514 vs. ExPASy Swiss-Prot
Match: RL10A_CAEEL (60S ribosomal protein L10a OS=Caenorhabditis elegans GN=rpl-10a PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 4.694e-38
Identity = 72/111 (64.86%), Postives = 96/111 (86.49%), Query Frame = -2
Query:  211 YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQKSLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 543
            Y AF+ASES+IKQIPR+LGPGLNKAGKFP++VTH +SL+SK +E +ATVKFQ+KKVLC+ VAVG++ + ++++  N+ +S+NFLVSLLKKNWQNVR L +KSTMG   R++
Sbjct:  106 YDAFIASESLIKQIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKKVLCLSVAVGHVGLTQEELVSNISLSINFLVSLLKKNWQNVRSLNIKSTMGKPQRVY 216          
BLAST of CB304514 vs. ExPASy Swiss-Prot
Match: RL10A_CHLRE (60S ribosomal protein L10a OS=Chlamydomonas reinhardtii GN=RPL10A PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 6.130e-38
Identity = 78/111 (70.27%), Postives = 91/111 (81.98%), Query Frame = -2
Query:  211 YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQKSLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 543
            YHAFLAS+SVIKQIPRLLGPGLNKAGKFP  +   K+LE  V +TK ++KFQLKKVLCMGVAV N+ M E +I  N+  ++NFLVSLLKKNWQNVRCLY+KSTMG   RI+
Sbjct:  105 YHAFLASDSVIKQIPRLLGPGLNKAGKFPAPIN--KNLEEMVLDTKCSIKFQLKKVLCMGVAVANVGMTEGEIRTNIMYAINFLVSLLKKNWQNVRCLYIKSTMGKPIRIY 213          
BLAST of CB304514 vs. ExPASy Swiss-Prot
Match: RL10A_MACFA (60S ribosomal protein L10a OS=Macaca fascicularis GN=RPL10A PE=2 SV=3)

HSP 1 Score: 155.606 bits (392), Expect = 1.784e-37
Identity = 70/111 (63.06%), Postives = 95/111 (85.59%), Query Frame = -2
Query:  211 YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQKSLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 543
            Y AFLASES+IKQIPR+LGPGLNKAGKFP+ +TH +++ +KV+E K+T+KFQ+K+VLC+ VAVG++ M + ++  N+ ++VNFLVSLLKKNWQNVR LY+KSTMG   R++
Sbjct:  107 YDAFLASESLIKQIPRILGPGLNKAGKFPSPLTHNENMVAKVDEVKSTIKFQMKRVLCLAVAVGHVKMTDDELVYNIHLAVNFLVSLLKKNWQNVRALYIKSTMGKPQRLY 217          
BLAST of CB304514 vs. ExPASy Swiss-Prot
Match: RL10A_NEUCR (60S ribosomal protein L10a OS=Neurospora crassa GN=rpl-10a PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.575e-36
Identity = 70/111 (63.06%), Postives = 91/111 (81.98%), Query Frame = -2
Query:  211 YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQKSLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 543
            Y AF+ASE++IKQIPRLLGPGL+KAGKFPT V+H   L  K+NE K+T+KFQLKKVLCMGVAVGN+ M ++Q+  N+ +++N+LVSLLKK WQNV  L +K+TM P  R++
Sbjct:  107 YDAFVASEALIKQIPRLLGPGLSKAGKFPTPVSHSDDLTGKLNEVKSTIKFQLKKVLCMGVAVGNVGMTQEQLVGNIMLAINYLVSLLKKGWQNVGSLTIKATMSPPKRLY 217          
BLAST of CB304514 vs. ExPASy Swiss-Prot
Match: RL10A_ASHGO (60S ribosomal protein L10a OS=Ashbya gossypii GN=RPL10A PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.669e-35
Identity = 71/111 (63.96%), Postives = 90/111 (81.08%), Query Frame = -2
Query:  211 YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQKSLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 543
            Y+AF+ASE +IKQ+PRLLGP L+KAGKFPT V+H   L SKV + ++T+KFQLKKVLC+ VAVGN+ M+E  +   + MSVNFLVSLLKKNWQNV  L +KSTMGP+ R++
Sbjct:  107 YNAFIASEVLIKQVPRLLGPQLSKAGKFPTPVSHNDDLYSKVTDVRSTIKFQLKKVLCLAVAVGNVEMDEDTLVNQILMSVNFLVSLLKKNWQNVGSLVIKSTMGPAFRLY 217          
BLAST of CB304514 vs. ExPASy Swiss-Prot
Match: RL1B_SCHPO (60S ribosomal protein L1-B OS=Schizosaccharomyces pombe GN=rpl1b PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.847e-35
Identity = 69/111 (62.16%), Postives = 90/111 (81.08%), Query Frame = -2
Query:  211 YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQKSLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 543
            Y AF+ASE +IKQIPRLLGPGL+KAGKFP+ V+H   L  K+ E K+T+KFQLKKVLC+GVAVG++ M E+Q+  N+ ++VNFLVSLLKK WQN+  L +KSTMG  +R++
Sbjct:  106 YDAFIASEVLIKQIPRLLGPGLSKAGKFPSPVSHADDLYGKITEVKSTIKFQLKKVLCLGVAVGHVEMSEEQLIANIMLAVNFLVSLLKKGWQNIGSLVVKSTMGKPHRLY 216          
BLAST of CB304514 vs. ExPASy Swiss-Prot
Match: RL10A_CANGA (60S ribosomal protein L10a OS=Candida glabrata GN=RPL10A PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 4.857e-35
Identity = 70/111 (63.06%), Postives = 89/111 (80.18%), Query Frame = -2
Query:  211 YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQKSLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 543
            Y+AF+ASE +IKQ+PRLLGP L+KAGKFPT V+H   L  KV + ++T+KFQLKKVLC+ VAVGN+ M+E  +   + MSVNFLVSLLKKNWQNV  L +KSTMGP+ R++
Sbjct:  107 YNAFIASEVLIKQVPRLLGPQLSKAGKFPTPVSHNDDLYGKVTDVRSTIKFQLKKVLCLAVAVGNVEMDEDTLVNQILMSVNFLVSLLKKNWQNVGSLVIKSTMGPAFRLY 217          
The following BLAST results are available for this feature:
BLAST of CB304514 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
RL10A_HUMAN1.235e-3864.8660S ribosomal protein L10a OS=Homo sapiens GN=RPL1... [more]
RL10A_BOVIN1.235e-3864.8660S ribosomal protein L10a OS=Bos taurus GN=RPL10A... [more]
RL10A_DICDI1.613e-3861.2660S ribosomal protein L10a OS=Dictyostelium discoi... [more]
RL10A_CAEEL4.694e-3864.8660S ribosomal protein L10a OS=Caenorhabditis elega... [more]
RL10A_CHLRE6.130e-3870.2760S ribosomal protein L10a OS=Chlamydomonas reinha... [more]
RL10A_MACFA1.784e-3763.0660S ribosomal protein L10a OS=Macaca fascicularis ... [more]
RL10A_NEUCR2.575e-3663.0660S ribosomal protein L10a OS=Neurospora crassa GN... [more]
RL10A_ASHGO1.669e-3563.9660S ribosomal protein L10a OS=Ashbya gossypii GN=R... [more]
RL1B_SCHPO2.847e-3562.1660S ribosomal protein L1-B OS=Schizosaccharomyces ... [more]
RL10A_CANGA4.857e-3563.0660S ribosomal protein L10a OS=Candida glabrata GN=... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIaR_H11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIaR_H11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304514 ID=CB304514; Name=CB304514; organism=Citrus sinensis; type=EST; length=604bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCAAAAAAATTCGTACAAGT
CTACCATATTATAAGATTACTAGTGCATTAAATTCAGAAAAGAAAAAGAA
AAAGAAAAAGAAAATTGCAGGTTGTGACCATTCAAAGAAAGACATTTTGG
GTATAATAAGATCACACTAGGTTTTCCCTACAAAACTCCAACATAAAGCA
GAATTTCTTAAAAGATGCGGTTTGAAGGACCCATGGTACTCTTCAGATAG
AGGCACCTGACATTCTGCCAGTTTTTCTTCAACAATGAGACAAGGAAGTT
AACACTCATTTGAACATTCTGGAAGATCTGCTTCTCCTCCATTGAAAGGT
TTCCAACAGCAACTCCCATGCAAAGCACCTTCTTCAATTGGAACTTCACT
GTTGCCTTAGTCTCGTTGACTTTGGACTCCAGGGATTTTTGGTGAGTAAC
AAGGGTAGGGAACTTTCCTGCCTTGTTGAGACCAGGACCCAACAAACGAG
GAATCTGCTTGATGACAGACTCTGATGCCAAGAAAGCATGATATTTCTTG
GCAAGTTTCTTCACCAATTTCTTGTTCTTGTTCAATTTTTCAATCCTTCA
CATC
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