CB304514

Overview
NameCB304514
Unique NameCB304514
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length604
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4200 contig Csv1_Contig4200:340..943. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304514 vs. ExPASy Swiss-Prot
Match: RL10A_CANAL (60S ribosomal protein L10a OS=Candida albicans GN=RPL10A PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.082e-34
Identity = 72/111 (64.86%), Postives = 88/111 (79.28%), Query Frame = -2
Query:  211 YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQKSLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 543
            Y+AF+ASE +IKQIPRLLG  L+KAG+FPT V+H   L SKV + K+T+KFQLKKVLC+ VAVGN+ MEE  +   + M+ NFLVSLLKKNWQNV  L +KSTMGPS RI+
Sbjct:  107 YNAFIASEVLIKQIPRLLGRTLSKAGQFPTPVSHNDDLYSKVTDVKSTIKFQLKKVLCLAVAVGNVDMEEDVLVNQIMMAANFLVSLLKKNWQNVGSLVIKSTMGPSFRIY 217          
BLAST of CB304514 vs. ExPASy Swiss-Prot
Match: RL1_YEAST (60S ribosomal protein L1 OS=Saccharomyces cerevisiae GN=RPL1A PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.148e-34
Identity = 69/111 (62.16%), Postives = 88/111 (79.28%), Query Frame = -2
Query:  211 YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQKSLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 543
            Y+AF+ASE +IKQ+PRLLGP L+KAGKFPT V+H   L  KV + ++T+KFQLKKVLC+ VAVGN+ MEE  +   + MSVNF VSLLKKNWQNV  L +KS+MGP+ R++
Sbjct:  107 YNAFIASEVLIKQVPRLLGPQLSKAGKFPTPVSHNDDLYGKVTDVRSTIKFQLKKVLCLAVAVGNVEMEEDVLVNQILMSVNFFVSLLKKNWQNVGSLVVKSSMGPAFRLY 217          
BLAST of CB304514 vs. ExPASy Swiss-Prot
Match: RL1A_SCHPO (60S ribosomal protein L1-A OS=Schizosaccharomyces pombe GN=rpl1a PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 4.112e-34
Identity = 68/111 (61.26%), Postives = 89/111 (80.18%), Query Frame = -2
Query:  211 YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQKSLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 543
            Y AF+ASE +IKQIPRLLGPGL+KAGKFP+ V+H   L  K+ E K+T+KFQLKKVLC+GVAVG++ M E+Q+  N+ +++NFLVSLLKK WQN+  L +KSTMG   R++
Sbjct:  106 YDAFIASEVLIKQIPRLLGPGLSKAGKFPSPVSHSDDLYGKIIEVKSTIKFQLKKVLCLGVAVGHVDMAEEQLAANLSLAINFLVSLLKKGWQNIGSLVIKSTMGKPYRLY 216          
BLAST of CB304514 vs. ExPASy Swiss-Prot
Match: RL10A_TRYBR (60S ribosomal protein L10a OS=Trypanosoma brucei rhodesiense GN=RPL10A PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 9.160e-34
Identity = 67/111 (60.36%), Postives = 87/111 (78.38%), Query Frame = -2
Query:  211 YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQKSLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 543
            Y AFL SES+IK +PRL+GP +++ GKFPT+    +SL  KV E ++TVKFQLKKVLC+G  VG++ M E Q+ QNV M++NFLVSLLKKNWQN++  Y+KSTMG S RI+
Sbjct:  104 YDAFLCSESIIKTVPRLVGPHMHRVGKFPTVCAQNESLPDKVLELQSTVKFQLKKVLCLGTCVGHVDMTEDQVRQNVVMAINFLVSLLKKNWQNLKSAYIKSTMGKSQRIY 214          
BLAST of CB304514 vs. ExPASy Swiss-Prot
Match: RL10A_PIG (60S ribosomal protein L10a (Fragment) OS=Sus scrofa GN=RPL10A PE=2 SV=3)

HSP 1 Score: 90.1225 bits (222), Expect = 9.203e-18
Identity = 41/59 (69.49%), Postives = 52/59 (88.14%), Query Frame = -2
Query:  367 YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQKSLESKVNETKATVKFQLKKVLCM 543
            Y AFLASES+IKQIPR+LGPGLNKAGKFP+L+TH   + +KV+E K+ VKFQ+K+VLC+
Sbjct:  107 YDAFLASESLIKQIPRILGPGLNKAGKFPSLLTHNXDMVAKVDEVKSRVKFQMKEVLCL 165          
BLAST of CB304514 vs. ExPASy Swiss-Prot
Match: RL10A_CAERE (60S ribosomal protein L10a (Fragment) OS=Caenorhabditis remanei GN=rpl-10a PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.497e-17
Identity = 41/55 (74.55%), Postives = 51/55 (92.73%), Query Frame = -2
Query:  379 YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQKSLESKVNETKATVKFQLKK 543
            Y AF+ASES+IKQIPR+LGPGLNKAGKFP++VTH +SL+SK +E +ATVKFQ+KK
Sbjct:   58 YDAFIASESLIKQIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKK 112          
BLAST of CB304514 vs. ExPASy Swiss-Prot
Match: RL10A_ENTHI (60S ribosomal protein L10a (Fragment) OS=Entamoeba histolytica GN=RPL10A PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.226e-13
Identity = 35/66 (53.03%), Postives = 47/66 (71.21%), Query Frame = -2
Query:  346 YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQKSLESKVNETKATVKFQLKKVLCMGVAVGNL 543
            Y+ FL S+SV +Q+ ++LGPGLNK GKFP  +   + L+ K+NE +  V  QLKKVLCMGV  GN+
Sbjct:  100 YNTFLGSDSVGRQLQKILGPGLNKGGKFPPPLGKNEDLKVKINELQCQVNSQLKKVLCMGVGGGNV 165          
BLAST of CB304514 vs. ExPASy Swiss-Prot
Match: RL1_METB6 (50S ribosomal protein L1P OS=Methanoregula boonei (strain 6A8) GN=rpl1p PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.891e-11
Identity = 35/110 (31.82%), Postives = 60/110 (54.55%), Query Frame = -2
Query:  214 YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQKSLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRI 543
            Y  FLA  +V+ Q+ R LGP L   G+ P  +  Q  +   V   + +VK + K        VG+ +M  +Q+ +N+   +  + S+L++   NVR +++K+TMGPS R+
Sbjct:  104 YKYFLAETAVMPQVGRFLGPRLGPRGRMPMPIPGQTDIRPIVERLRNSVKIRTKDKTVFSTKVGSTAMTPEQVSENIDAILKRVESVLEQGHLNVRSVFVKTTMGPSVRL 213          
The following BLAST results are available for this feature:
BLAST of CB304514 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
RL10A_CANAL1.082e-3464.8660S ribosomal protein L10a OS=Candida albicans GN=... [more]
RL1_YEAST3.148e-3462.1660S ribosomal protein L1 OS=Saccharomyces cerevisi... [more]
RL1A_SCHPO4.112e-3461.2660S ribosomal protein L1-A OS=Schizosaccharomyces ... [more]
RL10A_TRYBR9.160e-3460.3660S ribosomal protein L10a OS=Trypanosoma brucei r... [more]
RL10A_PIG9.203e-1869.4960S ribosomal protein L10a (Fragment) OS=Sus scrof... [more]
RL10A_CAERE3.497e-1774.5560S ribosomal protein L10a (Fragment) OS=Caenorhab... [more]
RL10A_ENTHI5.226e-1353.0360S ribosomal protein L10a (Fragment) OS=Entamoeba... [more]
RL1_METB64.891e-1131.8250S ribosomal protein L1P OS=Methanoregula boonei ... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIaR_H11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIaR_H11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304514 ID=CB304514; Name=CB304514; organism=Citrus sinensis; type=EST; length=604bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCAAAAAAATTCGTACAAGT
CTACCATATTATAAGATTACTAGTGCATTAAATTCAGAAAAGAAAAAGAA
AAAGAAAAAGAAAATTGCAGGTTGTGACCATTCAAAGAAAGACATTTTGG
GTATAATAAGATCACACTAGGTTTTCCCTACAAAACTCCAACATAAAGCA
GAATTTCTTAAAAGATGCGGTTTGAAGGACCCATGGTACTCTTCAGATAG
AGGCACCTGACATTCTGCCAGTTTTTCTTCAACAATGAGACAAGGAAGTT
AACACTCATTTGAACATTCTGGAAGATCTGCTTCTCCTCCATTGAAAGGT
TTCCAACAGCAACTCCCATGCAAAGCACCTTCTTCAATTGGAACTTCACT
GTTGCCTTAGTCTCGTTGACTTTGGACTCCAGGGATTTTTGGTGAGTAAC
AAGGGTAGGGAACTTTCCTGCCTTGTTGAGACCAGGACCCAACAAACGAG
GAATCTGCTTGATGACAGACTCTGATGCCAAGAAAGCATGATATTTCTTG
GCAAGTTTCTTCACCAATTTCTTGTTCTTGTTCAATTTTTCAATCCTTCA
CATC
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