CB304521

Overview
NameCB304521
Unique NameCB304521
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length459
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4200 contig Csv1_Contig4200:505..963. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304521 vs. ExPASy Swiss-Prot
Match: RL10A_SPOFR (60S ribosomal protein L10a OS=Spodoptera frugiperda GN=RpL10A PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 7.710e-21
Identity = 44/76 (57.89%), Postives = 62/76 (81.58%), Query Frame = -2
Query:  231 ESLESKVNETKAPVKFQLKKVLCMGVAVGNLPMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 458
            ES+  K++E KA +KFQ+KKVLC+ VAVG++ M   ++ QNV +S+NFLVSLLKK+WQNVR L++KSTMGP  +++
Sbjct:  142 ESMTQKIDEVKATIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPPKLY 217          
BLAST of CB304521 vs. ExPASy Swiss-Prot
Match: RL10A_RAT (60S ribosomal protein L10a OS=Rattus norvegicus GN=Rpl10a PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 1.315e-20
Identity = 43/76 (56.58%), Postives = 62/76 (81.58%), Query Frame = -2
Query:  231 ESLESKVNETKAPVKFQLKKVLCMGVAVGNLPMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 458
            E++ +KV+E K+ +KFQ+KKVLC+ VAVG++ M + ++  N+ ++VNFLVSLLKKNWQNVR LY+KSTMG   R++
Sbjct:  142 ENMVAKVDEVKSTIKFQMKKVLCLAVAVGHVKMTDDELVYNIHLAVNFLVSLLKKNWQNVRALYIKSTMGKPQRLY 217          
BLAST of CB304521 vs. ExPASy Swiss-Prot
Match: RL10A_MOUSE (60S ribosomal protein L10a OS=Mus musculus GN=Rpl10a PE=1 SV=3)

HSP 1 Score: 98.5969 bits (244), Expect = 1.315e-20
Identity = 43/76 (56.58%), Postives = 62/76 (81.58%), Query Frame = -2
Query:  231 ESLESKVNETKAPVKFQLKKVLCMGVAVGNLPMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 458
            E++ +KV+E K+ +KFQ+KKVLC+ VAVG++ M + ++  N+ ++VNFLVSLLKKNWQNVR LY+KSTMG   R++
Sbjct:  142 ENMVAKVDEVKSTIKFQMKKVLCLAVAVGHVKMTDDELVYNIHLAVNFLVSLLKKNWQNVRALYIKSTMGKPQRLY 217          
BLAST of CB304521 vs. ExPASy Swiss-Prot
Match: RL10A_HUMAN (60S ribosomal protein L10a OS=Homo sapiens GN=RPL10A PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 1.315e-20
Identity = 43/76 (56.58%), Postives = 62/76 (81.58%), Query Frame = -2
Query:  231 ESLESKVNETKAPVKFQLKKVLCMGVAVGNLPMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 458
            E++ +KV+E K+ +KFQ+KKVLC+ VAVG++ M + ++  N+ ++VNFLVSLLKKNWQNVR LY+KSTMG   R++
Sbjct:  142 ENMVAKVDEVKSTIKFQMKKVLCLAVAVGHVKMTDDELVYNIHLAVNFLVSLLKKNWQNVRALYIKSTMGKPQRLY 217          
BLAST of CB304521 vs. ExPASy Swiss-Prot
Match: RL10A_BOVIN (60S ribosomal protein L10a OS=Bos taurus GN=RPL10A PE=2 SV=3)

HSP 1 Score: 98.5969 bits (244), Expect = 1.315e-20
Identity = 43/76 (56.58%), Postives = 62/76 (81.58%), Query Frame = -2
Query:  231 ESLESKVNETKAPVKFQLKKVLCMGVAVGNLPMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 458
            E++ +KV+E K+ +KFQ+KKVLC+ VAVG++ M + ++  N+ ++VNFLVSLLKKNWQNVR LY+KSTMG   R++
Sbjct:  142 ENMVAKVDEVKSTIKFQMKKVLCLAVAVGHVKMTDDELVYNIHLAVNFLVSLLKKNWQNVRALYIKSTMGKPQRLY 217          
BLAST of CB304521 vs. ExPASy Swiss-Prot
Match: RL10A_CANAL (60S ribosomal protein L10a OS=Candida albicans GN=RPL10A PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.718e-20
Identity = 47/76 (61.84%), Postives = 58/76 (76.32%), Query Frame = -2
Query:  231 ESLESKVNETKAPVKFQLKKVLCMGVAVGNLPMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 458
            + L SKV + K+ +KFQLKKVLC+ VAVGN+ MEE  +   + M+ NFLVSLLKKNWQNV  L +KSTMGPS RI+
Sbjct:  142 DDLYSKVTDVKSTIKFQLKKVLCLAVAVGNVDMEEDVLVNQIMMAANFLVSLLKKNWQNVGSLVIKSTMGPSFRIY 217          
BLAST of CB304521 vs. ExPASy Swiss-Prot
Match: RL10A_CAEEL (60S ribosomal protein L10a OS=Caenorhabditis elegans GN=rpl-10a PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.243e-20
Identity = 44/76 (57.89%), Postives = 62/76 (81.58%), Query Frame = -2
Query:  231 ESLESKVNETKAPVKFQLKKVLCMGVAVGNLPMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 458
            ESL+SK +E +A VKFQ+KKVLC+ VAVG++ + ++++  N+ +S+NFLVSLLKKNWQNVR L +KSTMG   R++
Sbjct:  141 ESLQSKSDEIRATVKFQMKKVLCLSVAVGHVGLTQEELVSNISLSINFLVSLLKKNWQNVRSLNIKSTMGKPQRVY 216          
BLAST of CB304521 vs. ExPASy Swiss-Prot
Match: RL10A_MACFA (60S ribosomal protein L10a OS=Macaca fascicularis GN=RPL10A PE=2 SV=3)

HSP 1 Score: 97.4413 bits (241), Expect = 2.930e-20
Identity = 42/76 (55.26%), Postives = 62/76 (81.58%), Query Frame = -2
Query:  231 ESLESKVNETKAPVKFQLKKVLCMGVAVGNLPMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 458
            E++ +KV+E K+ +KFQ+K+VLC+ VAVG++ M + ++  N+ ++VNFLVSLLKKNWQNVR LY+KSTMG   R++
Sbjct:  142 ENMVAKVDEVKSTIKFQMKRVLCLAVAVGHVKMTDDELVYNIHLAVNFLVSLLKKNWQNVRALYIKSTMGKPQRLY 217          
BLAST of CB304521 vs. ExPASy Swiss-Prot
Match: RL10A_ASHGO (60S ribosomal protein L10a OS=Ashbya gossypii GN=RPL10A PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 6.527e-20
Identity = 45/76 (59.21%), Postives = 59/76 (77.63%), Query Frame = -2
Query:  231 ESLESKVNETKAPVKFQLKKVLCMGVAVGNLPMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 458
            + L SKV + ++ +KFQLKKVLC+ VAVGN+ M+E  +   + MSVNFLVSLLKKNWQNV  L +KSTMGP+ R++
Sbjct:  142 DDLYSKVTDVRSTIKFQLKKVLCLAVAVGNVEMDEDTLVNQILMSVNFLVSLLKKNWQNVGSLVIKSTMGPAFRLY 217          
BLAST of CB304521 vs. ExPASy Swiss-Prot
Match: RL10A_NEUCR (60S ribosomal protein L10a OS=Neurospora crassa GN=rpl-10a PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.454e-19
Identity = 42/76 (55.26%), Postives = 59/76 (77.63%), Query Frame = -2
Query:  231 ESLESKVNETKAPVKFQLKKVLCMGVAVGNLPMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 458
            + L  K+NE K+ +KFQLKKVLCMGVAVGN+ M ++Q+  N+ +++N+LVSLLKK WQNV  L +K+TM P  R++
Sbjct:  142 DDLTGKLNEVKSTIKFQLKKVLCMGVAVGNVGMTQEQLVGNIMLAINYLVSLLKKGWQNVGSLTIKATMSPPKRLY 217          
The following BLAST results are available for this feature:
BLAST of CB304521 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
RL10A_SPOFR7.710e-2157.8960S ribosomal protein L10a OS=Spodoptera frugiperd... [more]
RL10A_RAT1.315e-2056.5860S ribosomal protein L10a OS=Rattus norvegicus GN... [more]
RL10A_MOUSE1.315e-2056.5860S ribosomal protein L10a OS=Mus musculus GN=Rpl1... [more]
RL10A_HUMAN1.315e-2056.5860S ribosomal protein L10a OS=Homo sapiens GN=RPL1... [more]
RL10A_BOVIN1.315e-2056.5860S ribosomal protein L10a OS=Bos taurus GN=RPL10A... [more]
RL10A_CANAL1.718e-2061.8460S ribosomal protein L10a OS=Candida albicans GN=... [more]
RL10A_CAEEL2.243e-2057.8960S ribosomal protein L10a OS=Caenorhabditis elega... [more]
RL10A_MACFA2.930e-2055.2660S ribosomal protein L10a OS=Macaca fascicularis ... [more]
RL10A_ASHGO6.527e-2059.2160S ribosomal protein L10a OS=Ashbya gossypii GN=R... [more]
RL10A_NEUCR1.454e-1955.2660S ribosomal protein L10a OS=Neurospora crassa GN... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IVaR_A10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IVaR_A10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304521 ID=CB304521; Name=CB304521; organism=Citrus sinensis; type=EST; length=459bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTCAATTCAACATCTCTCCA
ACAAAAAAATTCGTACAAGTCTACCATATTATAAGATTACTAGTGCATTA
AATTCAGAAAAGAAAAAGAAAAAGAAAAAGAAAATTGCAGGTTGGGACCA
TTCAAAGAAAGACATTTTGGGTATAATAAGATCACACTAGGTTTTCCCTA
CAAAACTCCAACATAAAGCAGAATTTCTTAAAAGATGCGGTTTGAAGGAC
CCATGGTACTCTTCAGATAGAGGCACCTGACATTCTGCCAGTTTTTCTTC
AACAATGAGACAAGGAAGTTAACACTCATTTGAACATTCTGGAAGATCTG
CTTCTCCTCCATTGGAAGGTTTCCAACAGCAACTCCCATGCAAAGCACCT
TCTTCAATTGGAACTTCACTGGTGCCTTAGTCTCGTTGACTTTGGACTCC
AGGGATTCT
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