CB304521

Overview
NameCB304521
Unique NameCB304521
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length459
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4200 contig Csv1_Contig4200:505..963. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB304521 vs. ExPASy Swiss-Prot
Match: RL1B_SCHPO (60S ribosomal protein L1-B OS=Schizosaccharomyces pombe GN=rpl1b PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.899e-19
Identity = 42/76 (55.26%), Postives = 59/76 (77.63%), Query Frame = -2 
Query:  231 ESLESKVNETKAPVKFQLKKVLCMGVAVGNLPMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 458
            + L  K+ E K+ +KFQLKKVLC+GVAVG++ M E+Q+  N+ ++VNFLVSLLKK WQN+  L +KSTMG  +R++
Sbjct:  141 DDLYGKITEVKSTIKFQLKKVLCLGVAVGHVEMSEEQLIANIMLAVNFLVSLLKKGWQNIGSLVVKSTMGKPHRLY 216
[Close]
BLAST of CB304521 vs. ExPASy Swiss-Prot
Match: RL10A_CANGA (60S ribosomal protein L10a OS=Candida glabrata GN=RPL10A PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.899e-19
Identity = 44/76 (57.89%), Postives = 58/76 (76.32%), Query Frame = -2 
Query:  231 ESLESKVNETKAPVKFQLKKVLCMGVAVGNLPMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 458
            + L  KV + ++ +KFQLKKVLC+ VAVGN+ M+E  +   + MSVNFLVSLLKKNWQNV  L +KSTMGP+ R++
Sbjct:  142 DDLYGKVTDVRSTIKFQLKKVLCLAVAVGNVEMDEDTLVNQILMSVNFLVSLLKKNWQNVGSLVIKSTMGPAFRLY 217
[Close]
BLAST of CB304521 vs. ExPASy Swiss-Prot
Match: RL1_YEAST (60S ribosomal protein L1 OS=Saccharomyces cerevisiae GN=RPL1A PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.231e-18
Identity = 43/76 (56.58%), Postives = 57/76 (75.00%), Query Frame = -2 
Query:  231 ESLESKVNETKAPVKFQLKKVLCMGVAVGNLPMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 458
            + L  KV + ++ +KFQLKKVLC+ VAVGN+ MEE  +   + MSVNF VSLLKKNWQNV  L +KS+MGP+ R++
Sbjct:  142 DDLYGKVTDVRSTIKFQLKKVLCLAVAVGNVEMEEDVLVNQILMSVNFFVSLLKKNWQNVGSLVVKSSMGPAFRLY 217
[Close]
BLAST of CB304521 vs. ExPASy Swiss-Prot
Match: RL1A_SCHPO (60S ribosomal protein L1-A OS=Schizosaccharomyces pombe GN=rpl1a PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 3.582e-18
Identity = 41/76 (53.95%), Postives = 58/76 (76.32%), Query Frame = -2 
Query:  231 ESLESKVNETKAPVKFQLKKVLCMGVAVGNLPMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 458
            + L  K+ E K+ +KFQLKKVLC+GVAVG++ M E+Q+  N+ +++NFLVSLLKK WQN+  L +KSTMG   R++
Sbjct:  141 DDLYGKIIEVKSTIKFQLKKVLCLGVAVGHVDMAEEQLAANLSLAINFLVSLLKKGWQNIGSLVIKSTMGKPYRLY 216
The following BLAST results are available for this feature:
BLAST of CB304521 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
RL1B_SCHPO1.899e-1955.2660S ribosomal protein L1-B OS=Schizosaccharomyces ... [more]
RL10A_CANGA1.899e-1957.8960S ribosomal protein L10a OS=Candida glabrata GN=... [more]
RL1_YEAST1.231e-1856.5860S ribosomal protein L1 OS=Saccharomyces cerevisi... [more]
RL1A_SCHPO3.582e-1853.9560S ribosomal protein L1-A OS=Schizosaccharomyces ... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IVaR_A10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IVaR_A10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304521 ID=CB304521; Name=CB304521; organism=Citrus sinensis; type=EST; length=459bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTCAATTCAACATCTCTCCA
ACAAAAAAATTCGTACAAGTCTACCATATTATAAGATTACTAGTGCATTA
AATTCAGAAAAGAAAAAGAAAAAGAAAAAGAAAATTGCAGGTTGGGACCA
TTCAAAGAAAGACATTTTGGGTATAATAAGATCACACTAGGTTTTCCCTA
CAAAACTCCAACATAAAGCAGAATTTCTTAAAAGATGCGGTTTGAAGGAC
CCATGGTACTCTTCAGATAGAGGCACCTGACATTCTGCCAGTTTTTCTTC
AACAATGAGACAAGGAAGTTAACACTCATTTGAACATTCTGGAAGATCTG
CTTCTCCTCCATTGGAAGGTTTCCAACAGCAACTCCCATGCAAAGCACCT
TCTTCAATTGGAACTTCACTGGTGCCTTAGTCTCGTTGACTTTGGACTCC
AGGGATTCT
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