CB304523

Overview
NameCB304523
Unique NameCB304523
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length613
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2673 contig Csv1_Contig2673:843..1455. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CALM4_MOUSE (Calmodulin-4 OS=Mus musculus GN=Calm4 PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 8.493e-11
Identity = 29/61 (47.54%), Postives = 46/61 (75.41%), Query Frame = -1 
Query:  404 ELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKV 586
            EL+  F V D++ +G+I+  EL+  ++ LGE L+ EE+++MIR ADVD DG++ YEEFV++
Sbjct:   84 ELRAVFNVLDQNGDGYITVDELKESLSKLGESLSQEELEDMIRVADVDQDGKVKYEEFVRL 144
[Close]
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CALL4_HUMAN (Calmodulin-like protein 4 OS=Homo sapiens GN=CALML4 PE=2 SV=3)

HSP 1 Score: 67.0106 bits (162), Expect = 8.493e-11
Identity = 27/63 (42.86%), Postives = 49/63 (77.78%), Query Frame = -1 
Query:  410 DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFV 598
            D ++E+  A  + DK++ G++ A++LR  +T+LGEKLT +EVD++ READ++ +G++ Y+EF+
Sbjct:  124 DPKKEILLAMLMVDKEKKGYVMASDLRSKLTSLGEKLTHKEVDDLFREADIEPNGKVKYDEFI 186
The following BLAST results are available for this feature:
BLAST of CB304523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 272
Match NameE-valueIdentityDescription
CALM4_MOUSE8.493e-1147.54Calmodulin-4 OS=Mus musculus GN=Calm4 PE=2 SV=2[more]
CALL4_HUMAN8.493e-1142.86Calmodulin-like protein 4 OS=Homo sapiens GN=CALML... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IVaR_A12 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IVaR_A12 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304523 ID=CB304523; Name=CB304523; organism=Citrus sinensis; type=EST; length=613bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATAGGCCAAGAAACCTAAGC
TGATAGTCTGATACATAAAATAGGATACATATTTCGACCAAAAGAAAAAT
AAACATCGCAAGGGCAGAAATTAATGAAACACATTAAACAGACAACAACA
TTCATAGAACAGCAGAACAACTAAAATAATAAAAACCGAAAAGTTTTTCG
AGTCACAAGACATATTGACGAGGGAGACAACATTCTTCCTACACCATCAG
GCCCATCACCATTAAAAGACCATTGCTTCCTTTAGCCTGACCCTCATGAC
TATCAAATTAAAAATTGTAAAAGAGAAAACTAGGAATCCCTTTATAATTT
AGTCAACCCATTTTATAAGTATTGGTGGGTTGGGGTCATTACTTGGCCAT
CATAACCTTGACAAATTCCTCATAATTTATCTGGCCATCACCATCAACAT
CAGCTTCCCTTATCATCTCATCAACTTCTTCATCAGTAAGTTTCTCTCCT
AGGTTTGTCATCACATGGCGCAACTCAGCAGCTGAGATGAAACCATTCTG
ATCCTTGTCGAAAACCCGGAAGGCCTCTTTCAGCTCCTCCTCAGAGTCGG
TATCCTCATCTTC
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