CB304523

Overview
NameCB304523
Unique NameCB304523
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length613
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2673 contig Csv1_Contig2673:843..1455. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CALM_CAEEL (Calmodulin OS=Caenorhabditis elegans GN=cmd-1 PE=1 SV=3)

HSP 1 Score: 130.954 bits (328), Expect = 4.789e-30
Identity = 62/72 (86.11%), Postives = 68/72 (94.44%), Query Frame = -1
Query:  392 EDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 607
            +DTDSEEE++EAFRVFDKD NGFISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV +M  K
Sbjct:   78 KDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTTK 149          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CALM3_SOLTU (Putative calmodulin-3 (Fragment) OS=Solanum tuberosum GN=PCM3 PE=5 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.789e-30
Identity = 65/72 (90.28%), Postives = 69/72 (95.83%), Query Frame = -1
Query:  392 EDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 607
            +DTD EEELKEAFRVFDKD+NGFISAAEL HVMTNLGEKLTDEEVDE+IREADVD DGQINY+EFVKVMMAK
Sbjct:   53 KDTDFEEELKEAFRVFDKDRNGFISAAELPHVMTNLGEKLTDEEVDEIIREADVDCDGQINYDEFVKVMMAK 124          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CALM_PAXIN (Calmodulin OS=Paxillus involutus GN=calA PE=2 SV=3)

HSP 1 Score: 130.568 bits (327), Expect = 6.255e-30
Identity = 62/71 (87.32%), Postives = 69/71 (97.18%), Query Frame = -1
Query:  392 DTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 604
            DTDSEEE+KEAF+VFDKD NG+ISAAELRHVMTNLGEKLTD EVDEMIREADVDGDGQINY+EFVK+M++K
Sbjct:   79 DTDSEEEIKEAFKVFDKDGNGYISAAELRHVMTNLGEKLTDTEVDEMIREADVDGDGQINYDEFVKMMLSK 149          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CML1_ORYSI (Calmodulin-like protein 1 OS=Oryza sativa subsp. indica GN=CML1 PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 8.169e-30
Identity = 64/71 (90.14%), Postives = 66/71 (92.96%), Query Frame = -1
Query:  392 DTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 604
            D DSEEELKEAFRVFDKDQNGFISAAELRHVM N+GE+LTDEEV EMI EADVDGDGQINYEEFVK MMAK
Sbjct:   79 DKDSEEELKEAFRVFDKDQNGFISAAELRHVMANIGERLTDEEVGEMISEADVDGDGQINYEEFVKCMMAK 149          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CALM_STIJA (Calmodulin OS=Stichopus japonicus PE=1 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 8.169e-30
Identity = 61/72 (84.72%), Postives = 69/72 (95.83%), Query Frame = -1
Query:  392 EDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 607
            +DTDSEEE++EAFRVFDKD NG+ISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV +M +K
Sbjct:   78 KDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 149          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CALM_STRPU (Calmodulin (Fragment) OS=Strongylocentrotus purpuratus PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.067e-29
Identity = 61/72 (84.72%), Postives = 69/72 (95.83%), Query Frame = -1
Query:  392 EDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 607
            ++TDSEEE++EAFRVFDKD NGFISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV +M +K
Sbjct:    9 KETDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVAMMTSK 80          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CALM_PHYPO (Calmodulin OS=Physarum polycephalum PE=2 SV=3)

HSP 1 Score: 129.798 bits (325), Expect = 1.067e-29
Identity = 60/71 (84.51%), Postives = 70/71 (98.59%), Query Frame = -1
Query:  392 DTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 604
            DTD+EEE++EAF+VFDKD NGFISAAELRHVMTNLGEKL+DEEVDEMIREADVDGDGQ+NY+EFVK+M++K
Sbjct:   79 DTDTEEEIREAFKVFDKDGNGFISAAELRHVMTNLGEKLSDEEVDEMIREADVDGDGQVNYDEFVKMMLSK 149          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CALM_HALOK (Calmodulin OS=Halichondria okadai PE=2 SV=3)

HSP 1 Score: 129.798 bits (325), Expect = 1.067e-29
Identity = 61/72 (84.72%), Postives = 69/72 (95.83%), Query Frame = -1
Query:  392 EDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 607
            ++TDSEEE++EAFRVFDKD NGFISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV +M +K
Sbjct:   78 KETDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVAMMTSK 149          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CALMB_ARBPU (Calmodulin-beta (Fragment) OS=Arbacia punctulata PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.067e-29
Identity = 61/72 (84.72%), Postives = 69/72 (95.83%), Query Frame = -1
Query:  392 EDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 607
            ++TDSEEE++EAFRVFDKD NGFISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV +M +K
Sbjct:   67 KETDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVAMMTSK 138          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CALM2_BRAFL (Calmodulin-2 OS=Branchiostoma floridae GN=CAM2 PE=2 SV=4)

HSP 1 Score: 129.798 bits (325), Expect = 1.067e-29
Identity = 61/72 (84.72%), Postives = 69/72 (95.83%), Query Frame = -1
Query:  392 EDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 607
            +DTDSEEE++EAF+VFDKD NGFISAAELRHVMTN GEKLTDEEVDEMIREAD+DGDGQ+NYEEFVK+M +K
Sbjct:   78 KDTDSEEEIREAFKVFDKDGNGFISAAELRHVMTNPGEKLTDEEVDEMIREADIDGDGQVNYEEFVKMMTSK 149          
The following BLAST results are available for this feature:
BLAST of CB304523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 272
Match NameE-valueIdentityDescription
CALM_CAEEL4.789e-3086.11Calmodulin OS=Caenorhabditis elegans GN=cmd-1 PE=1... [more]
CALM3_SOLTU4.789e-3090.28Putative calmodulin-3 (Fragment) OS=Solanum tubero... [more]
CALM_PAXIN6.255e-3087.32Calmodulin OS=Paxillus involutus GN=calA PE=2 SV=3[more]
CML1_ORYSI8.169e-3090.14Calmodulin-like protein 1 OS=Oryza sativa subsp. i... [more]
CALM_STIJA8.169e-3084.72Calmodulin OS=Stichopus japonicus PE=1 SV=2[more]
CALM_STRPU1.067e-2984.72Calmodulin (Fragment) OS=Strongylocentrotus purpur... [more]
CALM_PHYPO1.067e-2984.51Calmodulin OS=Physarum polycephalum PE=2 SV=3[more]
CALM_HALOK1.067e-2984.72Calmodulin OS=Halichondria okadai PE=2 SV=3[more]
CALMB_ARBPU1.067e-2984.72Calmodulin-beta (Fragment) OS=Arbacia punctulata P... [more]
CALM2_BRAFL1.067e-2984.72Calmodulin-2 OS=Branchiostoma floridae GN=CAM2 PE=... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IVaR_A12 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IVaR_A12 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304523 ID=CB304523; Name=CB304523; organism=Citrus sinensis; type=EST; length=613bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATAGGCCAAGAAACCTAAGC
TGATAGTCTGATACATAAAATAGGATACATATTTCGACCAAAAGAAAAAT
AAACATCGCAAGGGCAGAAATTAATGAAACACATTAAACAGACAACAACA
TTCATAGAACAGCAGAACAACTAAAATAATAAAAACCGAAAAGTTTTTCG
AGTCACAAGACATATTGACGAGGGAGACAACATTCTTCCTACACCATCAG
GCCCATCACCATTAAAAGACCATTGCTTCCTTTAGCCTGACCCTCATGAC
TATCAAATTAAAAATTGTAAAAGAGAAAACTAGGAATCCCTTTATAATTT
AGTCAACCCATTTTATAAGTATTGGTGGGTTGGGGTCATTACTTGGCCAT
CATAACCTTGACAAATTCCTCATAATTTATCTGGCCATCACCATCAACAT
CAGCTTCCCTTATCATCTCATCAACTTCTTCATCAGTAAGTTTCTCTCCT
AGGTTTGTCATCACATGGCGCAACTCAGCAGCTGAGATGAAACCATTCTG
ATCCTTGTCGAAAACCCGGAAGGCCTCTTTCAGCTCCTCCTCAGAGTCGG
TATCCTCATCTTC
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