CB304551

Overview
NameCB304551
Unique NameCB304551
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length621
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304551_ssr159 microsatellite CB304551_ssr159:159..170. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13803 contig Csv1_Contig13803:15..635. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304551 vs. ExPASy Swiss-Prot
Match: NLTP2_SORBI (Non-specific lipid-transfer protein 2 OS=Sorghum bicolor GN=LTP2 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.489e-26
Identity = 56/92 (60.87%), Postives = 67/92 (72.83%), Query Frame = -1
Query:  226 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRV 501
            A+TCGQV++++ PC+ + R  G  P   CCSGVRSLN AARTT DR+AACNCLK A   IRG+    AA +PS+CGV IPY IS STDC RV
Sbjct:   30 AVTCGQVSSAIGPCLSYARGQGSGPSAGCCSGVRSLNSAARTTADRRAACNCLKNAARGIRGLNVGKAASIPSKCGVSIPYTISTSTDCSRV 121          
BLAST of CB304551 vs. ExPASy Swiss-Prot
Match: NLTP1_SOLLC (Non-specific lipid-transfer protein 1 OS=Solanum lycopersicum GN=TSW12 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.489e-26
Identity = 58/97 (59.79%), Postives = 70/97 (72.16%), Query Frame = -1
Query:  223 PVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRVR 513
            P   A+TCGQVTA LAPC+P+L+  GR P   CC GV++L G+A+TT DR+ AC CLK A   I+GI  N AAG+PS C V IPYKISPSTDC  V+
Sbjct:   20 PHAEALTCGQVTAGLAPCLPYLQ--GRGPLGGCCGGVKNLLGSAKTTADRKTACTCLKSAANAIKGIDLNKAAGIPSVCKVNIPYKISPSTDCSTVQ 114          
BLAST of CB304551 vs. ExPASy Swiss-Prot
Match: NLTP2_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.945e-26
Identity = 58/94 (61.70%), Postives = 70/94 (74.47%), Query Frame = -1
Query:  223 AITCGQVTASLAPCIPFLR-TGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRVR 501
            A+T GQVT SLAPCI +LR +G    PP CC+G++SLN AA+TTP RQAAC C+K A   I GI   +A+GLP +CGV IPYKISPSTDC  V+
Sbjct:   27 AVTSGQVTNSLAPCINYLRGSGAGAVPPGCCTGIKSLNSAAQTTPVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCNSVK 120          
BLAST of CB304551 vs. ExPASy Swiss-Prot
Match: NLTP1_SOLPN (Non-specific lipid-transfer protein 1 OS=Solanum pennellii GN=LTP1 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.945e-26
Identity = 58/97 (59.79%), Postives = 69/97 (71.13%), Query Frame = -1
Query:  223 PVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRVR 513
            P   A+TCGQVTA LAPC+P+L+  GR P   CC GV+ L G+A+TT DR+ AC CLK A   I+GI  N AAG+PS C V IPYKISPSTDC  V+
Sbjct:   20 PHAEALTCGQVTAGLAPCLPYLQ--GRGPLGGCCGGVKGLLGSAKTTADRKTACTCLKSAANAIKGIDLNKAAGIPSVCKVNIPYKISPSTDCSTVQ 114          
BLAST of CB304551 vs. ExPASy Swiss-Prot
Match: NLTP1_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.945e-26
Identity = 58/94 (61.70%), Postives = 70/94 (74.47%), Query Frame = -1
Query:  223 AITCGQVTASLAPCIPFLR-TGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRVR 501
            A+T GQVT SLAPCI +LR +G    PP CC+G++SLN AA+TTP RQAAC C+K A   I GI   +A+GLP +CGV IPYKISPSTDC  V+
Sbjct:   23 AVTSGQVTNSLAPCINYLRGSGAGAVPPGCCTGIKSLNSAAQTTPVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCNSVK 116          
BLAST of CB304551 vs. ExPASy Swiss-Prot
Match: NLTP_MAIZE (Non-specific lipid-transfer protein OS=Zea mays PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.317e-26
Identity = 56/92 (60.87%), Postives = 66/92 (71.74%), Query Frame = -1
Query:  226 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRV 501
            AI+CGQV +++APCI + R  G  P   CCSGVRSLN AARTT DR+AACNCLK A   + G+    AA +PS+CGV IPY IS STDC RV
Sbjct:   28 AISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSIPYTISTSTDCSRV 119          
BLAST of CB304551 vs. ExPASy Swiss-Prot
Match: NLTP1_LENCU (Non-specific lipid-transfer protein 1 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 7.390e-26
Identity = 54/93 (58.06%), Postives = 69/93 (74.19%), Query Frame = -1
Query:  223 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRVR 501
            AI+CG V+ +L PC+ +L+ GG  P P CC GV+ LNGAARTT DR+AACNCLK + G+I G+KP   A LP +CGVR+PY IS ST+C  +R
Sbjct:   26 AISCGTVSGALVPCLTYLK-GGPGPSPQCCGGVKRLNGAARTTIDRRAACNCLKSSAGSISGLKPGNVATLPGKCGVRLPYTISTSTNCNTIR 117          
BLAST of CB304551 vs. ExPASy Swiss-Prot
Match: NLTP4_LENCU (Non-specific lipid-transfer protein 4 (Fragment) OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.260e-25
Identity = 56/93 (60.22%), Postives = 67/93 (72.04%), Query Frame = -1
Query:  223 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRVR 501
            AI+CG VT+ L+PC+ +L TGG  P P CC GV+ L  AA TTPDRQAACNCLK A G+I  +  N AA LP +CGV IPYKIS ST+C  V+
Sbjct:   18 AISCGAVTSDLSPCLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIPYKISTSTNCNTVK 109          
BLAST of CB304551 vs. ExPASy Swiss-Prot
Match: NLTP6_LENCU (Non-specific lipid-transfer protein 6 OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.150e-25
Identity = 56/93 (60.22%), Postives = 67/93 (72.04%), Query Frame = -1
Query:  223 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRVR 501
            AI+CG VT+ L+PC+ +L TGG  P P CC GV+ L  AA TTPDRQAACNCLK A G+I  +  N AA LP +CGV IPYKIS ST+C  V+
Sbjct:   26 AISCGAVTSDLSPCLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVDIPYKISTSTNCNTVK 117          
BLAST of CB304551 vs. ExPASy Swiss-Prot
Match: NLTP2_LENCU (Non-specific lipid-transfer protein 2 OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.808e-25
Identity = 55/93 (59.14%), Postives = 67/93 (72.04%), Query Frame = -1
Query:  223 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRVR 501
            AI+CG VT+ L+PC+ +L TGG  P P CC GV+ L  AA TTPDRQAACNCLK A G+I  +  N AA LP +CGV IPYKIS +T+C  V+
Sbjct:   26 AISCGAVTSDLSPCLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIPYKISTTTNCNTVK 117          
The following BLAST results are available for this feature:
BLAST of CB304551 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
NLTP2_SORBI1.489e-2660.87Non-specific lipid-transfer protein 2 OS=Sorghum b... [more]
NLTP1_SOLLC1.489e-2659.79Non-specific lipid-transfer protein 1 OS=Solanum l... [more]
NLTP2_GOSHI1.945e-2661.70Non-specific lipid-transfer protein OS=Gossypium h... [more]
NLTP1_SOLPN1.945e-2659.79Non-specific lipid-transfer protein 1 OS=Solanum p... [more]
NLTP1_GOSHI1.945e-2661.70Non-specific lipid-transfer protein OS=Gossypium h... [more]
NLTP_MAIZE3.317e-2660.87Non-specific lipid-transfer protein OS=Zea mays PE... [more]
NLTP1_LENCU7.390e-2658.06Non-specific lipid-transfer protein 1 OS=Lens culi... [more]
NLTP4_LENCU1.260e-2560.22Non-specific lipid-transfer protein 4 (Fragment) O... [more]
NLTP6_LENCU2.150e-2560.22Non-specific lipid-transfer protein 6 OS=Lens culi... [more]
NLTP2_LENCU2.808e-2559.14Non-specific lipid-transfer protein 2 OS=Lens culi... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IVaR_E02 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IVaR_E02 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304551 ID=CB304551; Name=CB304551; organism=Citrus sinensis; type=EST; length=621bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTGATCACTCAAAACACAGATCG
CGTTTACATATTTAATATGACATAAAAAGCAAATATACAAACATGACATG
AGAGTGAAACTCATACAAGTGGAGACTCGTTCGGACAAAGAAATTAACAT
AAATATTCTTTATTTATTTATTCTTCTCAGTCAATCATACTTGGAAAGTC
ACAGAGCTCAAACTCAACTTCACCTGACCCTAAAGCAGTCGGTGCTGGGG
CTGATCTTGTAAGGAATTCTGACTCCACATTGACTAGGAAGGCCAGCGGC
AACATTAGGTTTGATGCCGCGGATTGTTCCGTAAGCTCGTTTCAAGCAGT
TGCATGCAGCTTGGCGGTCAGGGGTGGTTCTGGCGGCGCCGTTGAGAGAC
CTGACGCCGCTACAGCATGGCGGTGGAGGAAAACGCCCTCCAGTTCTCAA
GAAAGGGATGCATGGAGCCAAGGAGGCTGTCACCTGCCCGCATGTTATGG
CATTAGTCACCGGGGCAGTCACCAGAATGCACAAAAGCAAAGCACAAACA
AGCTTAAGAGCAGCCATGAGGATTCTTCAGGGAGGCTTTTGCTTGGTTAT
AGCTAGTTATCAGGTTCTGTT
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