CB304551

Overview
NameCB304551
Unique NameCB304551
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length621
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304551_ssr159 microsatellite CB304551_ssr159:159..170. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13803 contig Csv1_Contig13803:15..635. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304551 vs. ExPASy Swiss-Prot
Match: NLTP4_ORYSJ (Non-specific lipid-transfer protein 4 OS=Oryza sativa subsp. japonica GN=Os12g0114500 PE=3 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 3.667e-25
Identity = 52/96 (54.17%), Postives = 65/96 (67.71%), Query Frame = -1
Query:  226 PVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRV 513
            P  +A+TCGQV + LAPCI +       P   CC GVR+LN AA TT DRQ  C CLK+    + G++P++ AG+PS+CGV IPY ISPSTDC RV
Sbjct:   23 PAASAVTCGQVVSMLAPCIMYATGRVSAPTGGCCDGVRTLNSAAATTADRQTTCACLKQQTSAMGGLRPDLVAGIPSKCGVNIPYAISPSTDCSRV 118          
BLAST of CB304551 vs. ExPASy Swiss-Prot
Match: NLTP_DAUCA (Non-specific lipid-transfer protein OS=Daucus carota GN=EP2 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.790e-25
Identity = 53/92 (57.61%), Postives = 67/92 (72.83%), Query Frame = -1
Query:  226 ITCGQVTASLAPCIPFLRTGGRFPPP-PCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRV 498
            +TCGQVT +LAPC+ +LR+    P P  CC+ VR LN AARTT D++ AC CLK+    + G+  N AAGLP++CGV IPYKISP+TDC RV
Sbjct:   28 LTCGQVTGALAPCLGYLRSQVNVPVPLTCCNVVRGLNNAARTTLDKRTACGCLKQTANAVTGLNLNAAAGLPARCGVNIPYKISPTTDCNRV 119          
BLAST of CB304551 vs. ExPASy Swiss-Prot
Match: NLTP_CICAR (Non-specific lipid-transfer protein OS=Cicer arietinum PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.790e-25
Identity = 56/94 (59.57%), Postives = 68/94 (72.34%), Query Frame = -1
Query:  223 NAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRVR 504
            +AITCG+V  +LAPC+ +L+ GG  P   CC GVR+LN AA TTPDRQAACNCLK A G+I  +  N AA LP +C V IPYKIS ST+C  +R
Sbjct:   23 SAITCGRVDTALAPCLGYLQ-GGPGPSAQCCGGVRNLNSAAVTTPDRQAACNCLKSAAGSISRLNANNAAALPGKCVVNIPYKISTSTNCATIR 115          
BLAST of CB304551 vs. ExPASy Swiss-Prot
Match: NLTP4_ARATH (Non-specific lipid-transfer protein 4 OS=Arabidopsis thaliana GN=LTP4 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.790e-25
Identity = 53/96 (55.21%), Postives = 70/96 (72.92%), Query Frame = -1
Query:  223 VTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRVR 510
            V  AITCG V +SL+PC+ +L  GG   PPPCC+GV+ LNG A+TTPDRQ AC CL+ A    +G+ P++A+GLP +CGV IPY IS ST+C  ++
Sbjct:   21 VDAAITCGTVASSLSPCLGYLSKGG-VVPPPCCAGVKKLNGMAQTTPDRQQACRCLQSA---AKGVNPSLASGLPGKCGVSIPYPISTSTNCATIK 112          
BLAST of CB304551 vs. ExPASy Swiss-Prot
Match: NLTP2_TOBAC (Non-specific lipid-transfer protein 2 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 8.170e-25
Identity = 54/97 (55.67%), Postives = 67/97 (69.07%), Query Frame = -1
Query:  223 PVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRVR 513
            P   A++CGQV + LAPC+P+L+  GR P   CC GV+ L GAA++  DR+ AC CLK A   I+GI    AAGLP  CGV IPYKISPSTDC +V+
Sbjct:   20 PHAEALSCGQVQSGLAPCLPYLQ--GRGPLGSCCGGVKGLLGAAKSLSDRKTACTCLKSAANAIKGIDMGKAAGLPGACGVNIPYKISPSTDCSKVQ 114          
BLAST of CB304551 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLLC (Non-specific lipid-transfer protein 2 OS=Solanum lycopersicum GN=LE16 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 8.170e-25
Identity = 54/97 (55.67%), Postives = 67/97 (69.07%), Query Frame = -1
Query:  223 PVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRVR 513
            P   +++CG+VT+ LAPC+P+L   GR P   CC GV+ L GAA+T  DR+ AC CLK A  +I+GI    AAGLP  CGV IPYKISPSTDC  V+
Sbjct:   20 PHAESLSCGEVTSGLAPCLPYLE--GRGPLGGCCGGVKGLLGAAKTPEDRKTACTCLKSAANSIKGIDTGKAAGLPGVCGVNIPYKISPSTDCSTVQ 114          
BLAST of CB304551 vs. ExPASy Swiss-Prot
Match: NLTP5_LENCU (Non-specific lipid-transfer protein 5 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.394e-24
Identity = 54/93 (58.06%), Postives = 65/93 (69.89%), Query Frame = -1
Query:  223 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRVR 501
            AI+CG VT  L+PC+ +L TGG  P P CC GV+ L  AA TTPDRQAACNC+K A  +I  +  N AA LP +CGV IPYKIS ST+C  V+
Sbjct:   25 AISCGAVTGDLSPCLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCMKSAASSITKLNTNNAAALPGKCGVNIPYKISTSTNCNTVK 116          
BLAST of CB304551 vs. ExPASy Swiss-Prot
Match: NLTP1_SORBI (Non-specific lipid-transfer protein 1 OS=Sorghum bicolor GN=LTP1 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.394e-24
Identity = 54/92 (58.70%), Postives = 66/92 (71.74%), Query Frame = -1
Query:  226 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRV 501
            AI+CGQV++++A C+ + R  G  P   CCSGVRSLN AARTT DR+AACNCLK A   I G+    AA +PS+CGV +PY IS STDC RV
Sbjct:   26 AISCGQVSSAIALCLSYARGQGFAPSAGCCSGVRSLNSAARTTADRRAACNCLKNAARGISGLNAGNAASIPSKCGVSVPYTISTSTDCSRV 117          
BLAST of CB304551 vs. ExPASy Swiss-Prot
Match: NLTP2_ORYSI (Non-specific lipid-transfer protein 2 OS=Oryza sativa subsp. indica GN=LTP2-A PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.820e-24
Identity = 53/92 (57.61%), Postives = 65/92 (70.65%), Query Frame = -1
Query:  226 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRV 501
            AI+CGQV ++++PC+ + R GG  P   CCSGVRSLN AA TT DR+ ACNCLK   G+I G+    AA +PS+CGV IPY ISPS DC  V
Sbjct:   27 AISCGQVNSAVSPCLSYAR-GGSGPSAACCSGVRSLNSAASTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 117          
BLAST of CB304551 vs. ExPASy Swiss-Prot
Match: NLT2B_ORYSJ (Non-specific lipid-transfer protein 2B OS=Oryza sativa subsp. japonica GN=LTP2-B PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.820e-24
Identity = 53/92 (57.61%), Postives = 65/92 (70.65%), Query Frame = -1
Query:  226 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRV 501
            AI+CGQV ++++PC+ + R GG  P   CCSGVRSLN AA TT DR+ ACNCLK   G+I G+    AA +PS+CGV IPY ISPS DC  V
Sbjct:   26 AISCGQVNSAVSPCLSYAR-GGSGPSAACCSGVRSLNSAATTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 116          
The following BLAST results are available for this feature:
BLAST of CB304551 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
NLTP4_ORYSJ3.667e-2554.17Non-specific lipid-transfer protein 4 OS=Oryza sat... [more]
NLTP_DAUCA4.790e-2557.61Non-specific lipid-transfer protein OS=Daucus caro... [more]
NLTP_CICAR4.790e-2559.57Non-specific lipid-transfer protein OS=Cicer ariet... [more]
NLTP4_ARATH4.790e-2555.21Non-specific lipid-transfer protein 4 OS=Arabidops... [more]
NLTP2_TOBAC8.170e-2555.67Non-specific lipid-transfer protein 2 OS=Nicotiana... [more]
NLTP2_SOLLC8.170e-2555.67Non-specific lipid-transfer protein 2 OS=Solanum l... [more]
NLTP5_LENCU1.394e-2458.06Non-specific lipid-transfer protein 5 OS=Lens culi... [more]
NLTP1_SORBI1.394e-2458.70Non-specific lipid-transfer protein 1 OS=Sorghum b... [more]
NLTP2_ORYSI1.820e-2457.61Non-specific lipid-transfer protein 2 OS=Oryza sat... [more]
NLT2B_ORYSJ1.820e-2457.61Non-specific lipid-transfer protein 2B OS=Oryza sa... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IVaR_E02 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IVaR_E02 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304551 ID=CB304551; Name=CB304551; organism=Citrus sinensis; type=EST; length=621bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTGATCACTCAAAACACAGATCG
CGTTTACATATTTAATATGACATAAAAAGCAAATATACAAACATGACATG
AGAGTGAAACTCATACAAGTGGAGACTCGTTCGGACAAAGAAATTAACAT
AAATATTCTTTATTTATTTATTCTTCTCAGTCAATCATACTTGGAAAGTC
ACAGAGCTCAAACTCAACTTCACCTGACCCTAAAGCAGTCGGTGCTGGGG
CTGATCTTGTAAGGAATTCTGACTCCACATTGACTAGGAAGGCCAGCGGC
AACATTAGGTTTGATGCCGCGGATTGTTCCGTAAGCTCGTTTCAAGCAGT
TGCATGCAGCTTGGCGGTCAGGGGTGGTTCTGGCGGCGCCGTTGAGAGAC
CTGACGCCGCTACAGCATGGCGGTGGAGGAAAACGCCCTCCAGTTCTCAA
GAAAGGGATGCATGGAGCCAAGGAGGCTGTCACCTGCCCGCATGTTATGG
CATTAGTCACCGGGGCAGTCACCAGAATGCACAAAAGCAAAGCACAAACA
AGCTTAAGAGCAGCCATGAGGATTCTTCAGGGAGGCTTTTGCTTGGTTAT
AGCTAGTTATCAGGTTCTGTT
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