CB304551

Overview
NameCB304551
Unique NameCB304551
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length621
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304551_ssr159 microsatellite CB304551_ssr159:159..170. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13803 contig Csv1_Contig13803:15..635. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304551 vs. ExPASy Swiss-Prot
Match: NLTPD_BRAOT (Non-specific lipid-transfer protein D OS=Brassica oleracea var. italica GN=WAX9D PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.157e-21
Identity = 51/99 (51.52%), Postives = 62/99 (62.63%), Query Frame = -1
Query:  223 PVTN--AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRVR 513
            P+T+  A++CG V+  +APCI +L       P  CCSGV SLN  ARTTPDRQ AC CL  A   +  I    AAGLP  CGV IPYKIS +T+C  V+
Sbjct:   20 PITSNAALSCGTVSGYVAPCIGYLAQNAPAVPTACCSGVTSLNNMARTTPDRQQACRCLVGAANALPTINVARAAGLPKACGVNIPYKISKTTNCNSVK 118          
BLAST of CB304551 vs. ExPASy Swiss-Prot
Match: NLTP3_VITSX (Non-specific lipid-transfer protein P3 OS=Vitis sp. PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.595e-20
Identity = 47/91 (51.65%), Postives = 62/91 (68.13%), Query Frame = -1
Query:  226 ITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRV 498
            ++CG V   +A CI +LR  G  P   CC+GV++L  +A TT DR+ AC CL  A  TI G+   +AAGLP++CGV IPYKISPST+C +V
Sbjct:    1 LSCGDVATQMASCINYLRGAGPLPAA-CCNGVKNLKNSATTTQDRRTACKCLISASKTISGVNFGLAAGLPAKCGVSIPYKISPSTNCDQV 90          
BLAST of CB304551 vs. ExPASy Swiss-Prot
Match: NLTP6_GOSHI (Non-specific lipid-transfer protein 6 OS=Gossypium hirsutum GN=LTP6 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.082e-20
Identity = 51/94 (54.26%), Postives = 59/94 (62.77%), Query Frame = -1
Query:  223 AITCGQVTASLAPCIPFLRTGGRFPPPP-CCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRVR 501
            AI+  QV +SL PC+ ++R     P PP  C G+RSL  AAR   DRQAAC C+K     I  I   VAAGLP QC V IPYKISPS DC RV+
Sbjct:   27 AISYDQVKSSLLPCVGYVRGNNARPAPPNYCKGIRSLKSAARIRLDRQAACKCIKSLAADISDINYGVAAGLPGQCNVHIPYKISPSIDCKRVK 120          
BLAST of CB304551 vs. ExPASy Swiss-Prot
Match: NLTP2_BRANA (Non-specific lipid-transfer protein 2 OS=Brassica napus GN=LTP2 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.552e-20
Identity = 51/99 (51.52%), Postives = 63/99 (63.64%), Query Frame = -1
Query:  223 PVTN--AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRVR 513
            P+T+  A++CG V+  +APCI +L   G  P   CC+GV +LN  ARTTPDRQ AC CL  A  +   +    AAGLP  CGV IPYKIS ST+C  VR
Sbjct:   20 PITSNAALSCGTVSGYVAPCIGYLTQNGPLPRG-CCTGVTNLNNMARTTPDRQQACRCLVGAANSFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          
BLAST of CB304551 vs. ExPASy Swiss-Prot
Match: NLTP8_HORVU (Non-specific lipid-transfer protein Cw18 OS=Hordeum vulgare GN=CW18 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.059e-20
Identity = 45/92 (48.91%), Postives = 59/92 (64.13%), Query Frame = -1
Query:  226 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRV 501
            AITCGQV+++L PC  + +  G  P   CCSGV+ L G AR+T D+QA C CLK   G     +   AAG+PS+CGV +PY IS S DC ++
Sbjct:   26 AITCGQVSSALGPCAAYAKGSGTSPSAGCCSGVKRLAGLARSTADKQATCRCLKSVAGAYNAGR---AAGIPSRCGVSVPYTISASVDCSKI 114          
BLAST of CB304551 vs. ExPASy Swiss-Prot
Match: NLTP3_BRANA (Non-specific lipid-transfer protein 3 OS=Brassica napus GN=LTP3 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.059e-20
Identity = 50/93 (53.76%), Postives = 59/93 (63.44%), Query Frame = -1
Query:  223 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRVR 501
            A++CG V+ +LA CI +L   G  P   CCSGV SLN  ARTTPDRQ AC CL  A   +  I    AAGLP  CGV IPYKIS +T+C  V+
Sbjct:   26 ALSCGTVSGNLAACIGYLTQNGPVPTA-CCSGVTSLNNMARTTPDRQQACRCLVGAANALPTINVARAAGLPKACGVNIPYKISKTTNCNSVK 117          
BLAST of CB304551 vs. ExPASy Swiss-Prot
Match: NLTP_AMACA (Non-specific lipid-transfer protein OS=Amaranthus caudatus PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.913e-20
Identity = 46/94 (48.94%), Postives = 62/94 (65.96%), Query Frame = -1
Query:  223 AITCGQVTASLAPCIPFLRTGGRFPPPP-CCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRVR 501
            A+TC  VT +L PC+ +L+  G  PPP  CC+GVRSL  AA+T  DR+ ACNC+K A    + +   VAA L SQCGVR+ Y +SP+ +C  V+
Sbjct:    1 AVTCTVVTKALGPCMTYLKGTGATPPPANCCAGVRSLKAAAQTVADRRMACNCMKSAAQKTKSLNYKVAARLASQCGVRMSYSVSPNVNCNSVQ 94          
BLAST of CB304551 vs. ExPASy Swiss-Prot
Match: NLTP1_AMAHP (Non-specific lipid-transfer protein 1 OS=Amaranthus hypochondriacus PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.913e-20
Identity = 46/94 (48.94%), Postives = 62/94 (65.96%), Query Frame = -1
Query:  223 AITCGQVTASLAPCIPFLRTGGRFPPPP-CCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRVR 501
            A+TC  VT +L PC+ +L+  G  PPP  CC+GVRSL  AA+T  DR+ ACNC+K A    + +   VAA L SQCGVR+ Y +SP+ +C  V+
Sbjct:    1 AVTCTVVTKALGPCMTYLKGTGATPPPANCCAGVRSLKAAAQTVADRRMACNCMKSAAQKTKSLNYKVAARLASQCGVRMSYSVSPNVNCNSVQ 94          
BLAST of CB304551 vs. ExPASy Swiss-Prot
Match: NLTPB_BRAOT (Non-specific lipid-transfer protein B OS=Brassica oleracea var. italica GN=WAX9B PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.350e-19
Identity = 49/93 (52.69%), Postives = 59/93 (63.44%), Query Frame = -1
Query:  223 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRVR 501
            A++CG V+ +LA CI +L   G  P   CC+GV +LN  ARTTPDRQ AC CL  A  +   +    AAGLP  CGV IPYKIS ST+C  VR
Sbjct:   26 ALSCGTVSGNLAACIGYLTQNGPLPRG-CCTGVTNLNNMARTTPDRQQACRCLVGAANSFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          
BLAST of CB304551 vs. ExPASy Swiss-Prot
Match: NLTPA_BRAOT (Non-specific lipid-transfer protein A OS=Brassica oleracea var. italica GN=WAX9A PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.763e-19
Identity = 49/103 (47.57%), Postives = 66/103 (64.08%), Query Frame = -1
Query:  223 PVT--NAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNV----AAGLPSQCGVRIPYKISPSTDCFRVR 513
            P+T   A+TCG V +++APCI ++  GG  P   CC+GV  LN  ARTTPDRQ AC CL+ A    R + PN+    AAG+P  CGV +P+ IS +T+C  V+
Sbjct:   20 PITANRALTCGTVNSNVAPCIGYITQGGTLPGA-CCTGVSKLNSMARTTPDRQQACRCLETA---ARALGPNLNAGRAAGIPKACGVSVPFPISTNTNCNNVK 118          
The following BLAST results are available for this feature:
BLAST of CB304551 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
NLTPD_BRAOT7.157e-2151.52Non-specific lipid-transfer protein D OS=Brassica ... [more]
NLTP3_VITSX1.595e-2051.65Non-specific lipid-transfer protein P3 OS=Vitis sp... [more]
NLTP6_GOSHI2.082e-2054.26Non-specific lipid-transfer protein 6 OS=Gossypium... [more]
NLTP2_BRANA3.552e-2051.52Non-specific lipid-transfer protein 2 OS=Brassica ... [more]
NLTP8_HORVU6.059e-2048.91Non-specific lipid-transfer protein Cw18 OS=Hordeu... [more]
NLTP3_BRANA6.059e-2053.76Non-specific lipid-transfer protein 3 OS=Brassica ... [more]
NLTP_AMACA7.913e-2048.94Non-specific lipid-transfer protein OS=Amaranthus ... [more]
NLTP1_AMAHP7.913e-2048.94Non-specific lipid-transfer protein 1 OS=Amaranthu... [more]
NLTPB_BRAOT1.350e-1952.69Non-specific lipid-transfer protein B OS=Brassica ... [more]
NLTPA_BRAOT1.763e-1947.57Non-specific lipid-transfer protein A OS=Brassica ... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IVaR_E02 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IVaR_E02 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304551 ID=CB304551; Name=CB304551; organism=Citrus sinensis; type=EST; length=621bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTGATCACTCAAAACACAGATCG
CGTTTACATATTTAATATGACATAAAAAGCAAATATACAAACATGACATG
AGAGTGAAACTCATACAAGTGGAGACTCGTTCGGACAAAGAAATTAACAT
AAATATTCTTTATTTATTTATTCTTCTCAGTCAATCATACTTGGAAAGTC
ACAGAGCTCAAACTCAACTTCACCTGACCCTAAAGCAGTCGGTGCTGGGG
CTGATCTTGTAAGGAATTCTGACTCCACATTGACTAGGAAGGCCAGCGGC
AACATTAGGTTTGATGCCGCGGATTGTTCCGTAAGCTCGTTTCAAGCAGT
TGCATGCAGCTTGGCGGTCAGGGGTGGTTCTGGCGGCGCCGTTGAGAGAC
CTGACGCCGCTACAGCATGGCGGTGGAGGAAAACGCCCTCCAGTTCTCAA
GAAAGGGATGCATGGAGCCAAGGAGGCTGTCACCTGCCCGCATGTTATGG
CATTAGTCACCGGGGCAGTCACCAGAATGCACAAAAGCAAAGCACAAACA
AGCTTAAGAGCAGCCATGAGGATTCTTCAGGGAGGCTTTTGCTTGGTTAT
AGCTAGTTATCAGGTTCTGTT
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