CB304551

Overview
NameCB304551
Unique NameCB304551
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length621
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304551_ssr159 microsatellite CB304551_ssr159:159..170. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13803 contig Csv1_Contig13803:15..635. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304551 vs. ExPASy Swiss-Prot
Match: NLTP1_BRANA (Non-specific lipid-transfer protein 1 OS=Brassica napus GN=LTP1 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.763e-19
Identity = 49/93 (52.69%), Postives = 58/93 (62.37%), Query Frame = -1
Query:  223 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRVR 501
            A++CG V+ +LA CI +L   G  P   CC+GV +LN  ARTTPDRQ AC CL  A      +    AAGLP  CGV IPYKIS ST+C  VR
Sbjct:   26 ALSCGTVSGNLAACIGYLTQNGPLPRG-CCTGVTNLNNMARTTPDRQQACRCLVGAANAFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          
BLAST of CB304551 vs. ExPASy Swiss-Prot
Match: NLTP3_ORYSJ (Non-specific lipid-transfer protein 3 OS=Oryza sativa subsp. japonica GN=LTP110-A PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.699e-19
Identity = 40/92 (43.48%), Postives = 60/92 (65.22%), Query Frame = -1
Query:  226 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRV 501
            A++CG VT+S+APC+ ++      P   CCSGVR+LNG A ++ DR+ AC+CLK    + R +    AA +PS+CGV + + IS S DC ++
Sbjct:   29 AVSCGDVTSSIAPCLSYVMGRESSPSSSCCSGVRTLNGKASSSADRRTACSCLKNMASSFRNLNMGNAASIPSKCGVSVAFPISTSVDCSKI 120          
BLAST of CB304551 vs. ExPASy Swiss-Prot
Match: NLTP3_ORYSI (Non-specific lipid-transfer protein 3 OS=Oryza sativa subsp. indica GN=LTP110-A PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.699e-19
Identity = 40/92 (43.48%), Postives = 60/92 (65.22%), Query Frame = -1
Query:  226 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRV 501
            A++CG VT+S+APC+ ++      P   CCSGVR+LNG A ++ DR+ AC+CLK    + R +    AA +PS+CGV + + IS S DC ++
Sbjct:   29 AVSCGDVTSSIAPCLSYVMGRESSPSSSCCSGVRTLNGKASSSADRRTACSCLKNMASSFRNLNMGNAASIPSKCGVSVAFPISTSVDCSKI 120          
BLAST of CB304551 vs. ExPASy Swiss-Prot
Match: NLTPC_ARATH (Non-specific lipid-transfer protein 12 OS=Arabidopsis thaliana GN=LTP12 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.143e-18
Identity = 45/93 (48.39%), Postives = 59/93 (63.44%), Query Frame = -1
Query:  235 PVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDC 513
            P  + I CG VT++LA C+ +L   G  P   CC GV+SL   A+TTPDR+  C CLK A   I+G+  ++ A LP+ CGV IPY IS ST+C
Sbjct:   21 PTESTIQCGTVTSTLAQCLTYLTNSGPLPSQ-CCVGVKSLYQLAQTTPDRKQVCECLKLAGKEIKGLNTDLVAALPTTCGVSIPYPISFSTNC 112          
BLAST of CB304551 vs. ExPASy Swiss-Prot
Match: NLTP1_HELAN (Non-specific lipid-transfer protein AP10 OS=Helianthus annuus PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.492e-18
Identity = 40/89 (44.94%), Postives = 60/89 (67.42%), Query Frame = -1
Query:  235 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDC 501
            AITC  VT +L PC+P+LR+GG+ P P CC+G + L GA RT  DR+ AC C K A   ++ ++P++A+ LP +CG+     I+P+ +C
Sbjct:   26 AITCNDVTGNLTPCLPYLRSGGK-PTPACCAGAKKLLGATRTQADRRTACKCAKTAAPQLK-VRPDMASSLPGKCGISTSIPINPNVNC 112          
BLAST of CB304551 vs. ExPASy Swiss-Prot
Match: NLTP1_HORVU (Non-specific lipid-transfer protein 1 OS=Hordeum vulgare GN=LTP1 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.325e-18
Identity = 41/92 (44.57%), Postives = 58/92 (63.04%), Query Frame = -1
Query:  226 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRV 501
            A+ CGQV + + PC+ +++ GG  P   CC+GVR L+  A+++ DRQ  CNCLK     I  +  N AA +PS+C V +PY ISP  DC R+
Sbjct:   26 ALNCGQVDSKMKPCLTYVQ-GGPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHNLNLNNAASIPSKCNVNVPYTISPDIDCSRI 116          
BLAST of CB304551 vs. ExPASy Swiss-Prot
Match: NLTPB_ARATH (Non-specific lipid-transfer protein 11 OS=Arabidopsis thaliana GN=LTP11 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.263e-17
Identity = 44/89 (49.44%), Postives = 53/89 (59.55%), Query Frame = -1
Query:  235 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDC 501
            AI C QV   LA C+P+L+ GG  P P CC+G+ SL  AA    DRQ ACNCLK    TI GI  + A  LP++CGV I    S + DC
Sbjct:   28 AIACPQVNMYLAQCLPYLKAGGN-PSPMCCNGLNSLKAAAPEKADRQVACNCLKSVANTIPGINDDFAKQLPAKCGVNIGVPFSKTVDC 115          
BLAST of CB304551 vs. ExPASy Swiss-Prot
Match: NLTPA_RICCO (Non-specific lipid-transfer protein A OS=Ricinus communis PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.270e-17
Identity = 42/88 (47.73%), Postives = 55/88 (62.50%), Query Frame = -1
Query:  235 ITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDC 498
            + CGQV +SLA CIPFL  G   P   CC+GV++L   A T+ DR+AAC C+K A      IK + A+ LP +CGV I   IS +T+C
Sbjct:    1 VDCGQVNSSLASCIPFLTGGVASPSASCCAGVQNLKTLAPTSADRRAACECIKAAAARFPTIKQDAASSLPKKCGVDINIPISKTTNC 88          
BLAST of CB304551 vs. ExPASy Swiss-Prot
Match: NLTP2_ARATH (Non-specific lipid-transfer protein 2 OS=Arabidopsis thaliana GN=LTP2 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.824e-16
Identity = 50/100 (50.00%), Postives = 61/100 (61.00%), Query Frame = -1
Query:  223 PVT-NAI-TCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIR-GIKPNVAAGLPSQCGVRIPYKISPSTDCFRVR 513
            P+T NA+ +CG V  +LA CI +L  G       CC+GV +L   A TTPDRQ AC CL+ A   +  G+    AAGLPS C V IPYKIS ST+C  VR
Sbjct:   20 PITANALMSCGTVNGNLAGCIAYLTRGAPLTQG-CCNGVTNLKNMASTTPDRQQACRCLQSAAKAVGPGLNTARAAGLPSACKVNIPYKISASTNCNTVR 118          
BLAST of CB304551 vs. ExPASy Swiss-Prot
Match: NLTP7_ARATH (Non-specific lipid-transfer protein 7 OS=Arabidopsis thaliana GN=LTP7 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.383e-16
Identity = 42/93 (45.16%), Postives = 60/93 (64.52%), Query Frame = -1
Query:  235 AITCGQVTASLAPCIPFLRTGG-RFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTI-RGIKPNVAAGLPSQCGVRIPY--KISPSTDC 501
            A++CG+V ++L PC  +L  GG   P P CC+GVR LNG   TT DR+ AC C+K A   +  G+  + AAG+P +CG++IPY  +I  +T C
Sbjct:   26 ALSCGEVNSNLKPCTGYLTNGGITSPGPQCCNGVRKLNGMVLTTLDRRQACRCIKNAARNVGPGLNADRAAGIPRRCGIKIPYSTQIRFNTKC 118          
The following BLAST results are available for this feature:
BLAST of CB304551 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
NLTP1_BRANA1.763e-1952.69Non-specific lipid-transfer protein 1 OS=Brassica ... [more]
NLTP3_ORYSJ6.699e-1943.48Non-specific lipid-transfer protein 3 OS=Oryza sat... [more]
NLTP3_ORYSI6.699e-1943.48Non-specific lipid-transfer protein 3 OS=Oryza sat... [more]
NLTPC_ARATH1.143e-1848.39Non-specific lipid-transfer protein 12 OS=Arabidop... [more]
NLTP1_HELAN1.492e-1844.94Non-specific lipid-transfer protein AP10 OS=Helian... [more]
NLTP1_HORVU3.325e-1844.57Non-specific lipid-transfer protein 1 OS=Hordeum v... [more]
NLTPB_ARATH1.263e-1749.44Non-specific lipid-transfer protein 11 OS=Arabidop... [more]
NLTPA_RICCO6.270e-1747.73Non-specific lipid-transfer protein A OS=Ricinus c... [more]
NLTP2_ARATH1.824e-1650.00Non-specific lipid-transfer protein 2 OS=Arabidops... [more]
NLTP7_ARATH2.383e-1645.16Non-specific lipid-transfer protein 7 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IVaR_E02 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IVaR_E02 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304551 ID=CB304551; Name=CB304551; organism=Citrus sinensis; type=EST; length=621bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTGATCACTCAAAACACAGATCG
CGTTTACATATTTAATATGACATAAAAAGCAAATATACAAACATGACATG
AGAGTGAAACTCATACAAGTGGAGACTCGTTCGGACAAAGAAATTAACAT
AAATATTCTTTATTTATTTATTCTTCTCAGTCAATCATACTTGGAAAGTC
ACAGAGCTCAAACTCAACTTCACCTGACCCTAAAGCAGTCGGTGCTGGGG
CTGATCTTGTAAGGAATTCTGACTCCACATTGACTAGGAAGGCCAGCGGC
AACATTAGGTTTGATGCCGCGGATTGTTCCGTAAGCTCGTTTCAAGCAGT
TGCATGCAGCTTGGCGGTCAGGGGTGGTTCTGGCGGCGCCGTTGAGAGAC
CTGACGCCGCTACAGCATGGCGGTGGAGGAAAACGCCCTCCAGTTCTCAA
GAAAGGGATGCATGGAGCCAAGGAGGCTGTCACCTGCCCGCATGTTATGG
CATTAGTCACCGGGGCAGTCACCAGAATGCACAAAAGCAAAGCACAAACA
AGCTTAAGAGCAGCCATGAGGATTCTTCAGGGAGGCTTTTGCTTGGTTAT
AGCTAGTTATCAGGTTCTGTT
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