CB304558

Overview
NameCB304558
Unique NameCB304558
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length434
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11729 contig Csv1_Contig11729:581..1014. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304558 vs. ExPASy Swiss-Prot
Match: RS3_HUMAN (40S ribosomal protein S3 OS=Homo sapiens GN=RPS3 PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 1.189e-17
Identity = 42/54 (77.78%), Postives = 45/54 (83.33%), Query Frame = -3
Query:  268 PVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDE 429
            PVN Y+D+AVRHVLLRQGVLGIKVKIML WDP GK GP  PLPD V+I  PKDE
Sbjct:  163 PVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDE 216          
BLAST of CB304558 vs. ExPASy Swiss-Prot
Match: RS3_BOVIN (40S ribosomal protein S3 OS=Bos taurus GN=RPS3 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.189e-17
Identity = 42/54 (77.78%), Postives = 45/54 (83.33%), Query Frame = -3
Query:  268 PVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDE 429
            PVN Y+D+AVRHVLLRQGVLGIKVKIML WDP GK GP  PLPD V+I  PKDE
Sbjct:  163 PVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDE 216          
BLAST of CB304558 vs. ExPASy Swiss-Prot
Match: RS3_ICTPU (40S ribosomal protein S3 OS=Ictalurus punctatus GN=rps3 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.649e-17
Identity = 41/54 (75.93%), Postives = 46/54 (85.19%), Query Frame = -3
Query:  268 PVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDE 429
            PVN Y+D+AVRHVLLRQGVLGIKVKIML WDP+GK GP  PLPD V+I  PK+E
Sbjct:  163 PVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKEE 216          
BLAST of CB304558 vs. ExPASy Swiss-Prot
Match: RS3_MANSE (40S ribosomal protein S3 OS=Manduca sexta GN=RpS3 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 6.525e-16
Identity = 37/61 (60.66%), Postives = 45/61 (73.77%), Query Frame = -3
Query:  247 PVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDEEEYVKPT 429
            P N+Y+++A RHVLLRQGVLGIKVKIML WD  GK GP  P PD + +  PKDE   ++PT
Sbjct:  164 PCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPAPLEPT 224          
BLAST of CB304558 vs. ExPASy Swiss-Prot
Match: RS3_DROME (40S ribosomal protein S3 OS=Drosophila melanogaster GN=RpS3 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.899e-15
Identity = 38/70 (54.29%), Postives = 51/70 (72.86%), Query Frame = -3
Query:  220 PVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDEEEYVKPTLVATDIEVP 429
            P N+Y+++A RHVLLRQGVLGIKVK+ML +DP  K GP  PLPD V++  PK+E+ Y  P    T+ ++P
Sbjct:  165 PCNDYVETATRHVLLRQGVLGIKVKVMLPYDPKNKIGPKKPLPDNVSVVEPKEEKIYETP---ETEYKIP 231          
BLAST of CB304558 vs. ExPASy Swiss-Prot
Match: RS3_CAEEL (40S ribosomal protein S3 OS=Caenorhabditis elegans GN=rps-3 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.361e-13
Identity = 39/74 (52.70%), Postives = 49/74 (66.22%), Query Frame = -3
Query:  220 PVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDE----EEYVKPTLVATDIEVP 429
            PVN+YI  AVRHV LRQGV+GIKVKIML +DP G+ GP   LPD V I  P++E    E + +      D++VP
Sbjct:  165 PVNDYIQQAVRHVQLRQGVIGIKVKIMLPYDPRGQNGPRNALPDHVQIVEPQEEVLPKEPHSQHKEEKKDVQVP 238          
BLAST of CB304558 vs. ExPASy Swiss-Prot
Match: RS3_SCHPO (40S ribosomal protein S3 OS=Schizosaccharomyces pombe GN=rps3 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 7.466e-12
Identity = 39/75 (52.00%), Postives = 47/75 (62.67%), Query Frame = -3
Query:  208 QPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDEEEYVKPTLVATDIEVPIQVA 432
            QP  ++IDSA RHVLLRQGVLG+KVKIML   P  K      LPD+V +  PK+EE   KP  V   I  P++ A
Sbjct:  164 QPAVDFIDSATRHVLLRQGVLGVKVKIML---PEPKTRQKKSLPDIVVVLDPKEEEPITKPYTV---INQPVEAA 232          
BLAST of CB304558 vs. ExPASy Swiss-Prot
Match: RS3_YEAST (40S ribosomal protein S3 OS=Saccharomyces cerevisiae GN=RPS3 PE=1 SV=5)

HSP 1 Score: 68.9366 bits (167), Expect = 9.751e-12
Identity = 36/63 (57.14%), Postives = 45/63 (71.43%), Query Frame = -3
Query:  244 QPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDEEEYVKPTL 432
            QPVN++ID+A RHVL+RQGVLGIKVKIM   DP   +     LPD VTI  PK+EE  + P++
Sbjct:  162 QPVNDFIDTATRHVLMRQGVLGIKVKIMR--DPAKSRTGPKALPDAVTIIEPKEEEPILAPSV 222          
The following BLAST results are available for this feature:
BLAST of CB304558 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
RS3_HUMAN1.189e-1777.7840S ribosomal protein S3 OS=Homo sapiens GN=RPS3 P... [more]
RS3_BOVIN1.189e-1777.7840S ribosomal protein S3 OS=Bos taurus GN=RPS3 PE=... [more]
RS3_ICTPU2.649e-1775.9340S ribosomal protein S3 OS=Ictalurus punctatus GN... [more]
RS3_MANSE6.525e-1660.6640S ribosomal protein S3 OS=Manduca sexta GN=RpS3 ... [more]
RS3_DROME1.899e-1554.2940S ribosomal protein S3 OS=Drosophila melanogaste... [more]
RS3_CAEEL1.361e-1352.7040S ribosomal protein S3 OS=Caenorhabditis elegans... [more]
RS3_SCHPO7.466e-1252.0040S ribosomal protein S3 OS=Schizosaccharomyces po... [more]
RS3_YEAST9.751e-1257.1440S ribosomal protein S3 OS=Saccharomyces cerevisi... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IVaR_E09 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IVaR_E09 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304558 ID=CB304558; Name=CB304558; organism=Citrus sinensis; type=EST; length=434bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTGCAAGAAAATTGGTCGATAATT
ATGAAATCTTTAACAATACTGATGACTACAGTATATCAAAATTAACACCA
TGGAGTCTGAGGTATCCTTCATTAGCAACAAAAATGAAAACTAGAGCACT
TCAAATACCATTGATAAAATATCAAAGAAGATGAGACTATACCCCACTTC
GGCCTTAAGCCACTTGGATTGGGACCTCAATATCAGTAGCAACCAATGTT
GGCTTGACATACTCCTCTTCATCCTTGGGTGAGTGGATTGTTACGAGATC
AGGTAGAGGGGTAGTAGGACCTTGCTTTCCATTAGGATCCCAACTAAGCA
TGATCTTGACCTTAATACCAAGTACACCCTGTCTCAAAAGAACATGTCTC
ACAGCAGAGTCAATATATTCATTCACTGGCTGAC
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