CB304573

Overview
NameCB304573
Unique NameCB304573
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length637
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13761 contig Csv1_Contig13761:79..715. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304573 vs. ExPASy Swiss-Prot
Match: RS26_BRUPA (40S ribosomal protein S26 (Fragment) OS=Brugia pahangi PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.126e-27
Identity = 54/75 (72.00%), Postives = 62/75 (82.67%), Query Frame = -3
Query:  411 NGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHS 635
            N GRNK GRGHV+ IRC+NCG+C PKDKAIK+F+VRNIV  AAVRD+ +A  YD Y LPKLY K+ YCVSCAIHS
Sbjct:    7 NHGRNKKGRGHVRPIRCTNCGRCAPKDKAIKKFVVRNIVVAAAVRDISDASAYDSYALPKLYHKLHYCVSCAIHS 81          
BLAST of CB304573 vs. ExPASy Swiss-Prot
Match: RS26_RAT (40S ribosomal protein S26 OS=Rattus norvegicus GN=Rps26 PE=3 SV=3)

HSP 1 Score: 120.553 bits (301), Expect = 6.965e-27
Identity = 53/75 (70.67%), Postives = 62/75 (82.67%), Query Frame = -3
Query:  411 NGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHS 635
            N GR K GRGHV+ IRC+NC +C PKDKAIK+F++RNIVE AAVRD+ EA V+D Y LPKLY K+ YCVSCAIHS
Sbjct:    7 NNGRAKKGRGHVQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVKLHYCVSCAIHS 81          
BLAST of CB304573 vs. ExPASy Swiss-Prot
Match: RS26_PIG (40S ribosomal protein S26 OS=Sus scrofa GN=RPS26 PE=3 SV=4)

HSP 1 Score: 120.553 bits (301), Expect = 6.965e-27
Identity = 53/75 (70.67%), Postives = 62/75 (82.67%), Query Frame = -3
Query:  411 NGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHS 635
            N GR K GRGHV+ IRC+NC +C PKDKAIK+F++RNIVE AAVRD+ EA V+D Y LPKLY K+ YCVSCAIHS
Sbjct:    7 NNGRAKKGRGHVQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVKLHYCVSCAIHS 81          
BLAST of CB304573 vs. ExPASy Swiss-Prot
Match: RS26_NEUCR (40S ribosomal protein S26E OS=Neurospora crassa GN=rps-26 PE=3 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 6.965e-27
Identity = 52/74 (70.27%), Postives = 62/74 (83.78%), Query Frame = -3
Query:  414 NGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIH 635
            N GRNK GRGHVK IRCSNC +C PKDKAIKRF +RN+VE AA+RD+ +A V+  YT+PK+Y K+QYCVSCAIH
Sbjct:    7 NNGRNKKGRGHVKPIRCSNCSRCTPKDKAIKRFTIRNMVESAAIRDISDASVFAEYTVPKMYLKLQYCVSCAIH 80          
BLAST of CB304573 vs. ExPASy Swiss-Prot
Match: RS26_MOUSE (40S ribosomal protein S26 OS=Mus musculus GN=Rps26 PE=2 SV=3)

HSP 1 Score: 120.553 bits (301), Expect = 6.965e-27
Identity = 53/75 (70.67%), Postives = 62/75 (82.67%), Query Frame = -3
Query:  411 NGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHS 635
            N GR K GRGHV+ IRC+NC +C PKDKAIK+F++RNIVE AAVRD+ EA V+D Y LPKLY K+ YCVSCAIHS
Sbjct:    7 NNGRAKKGRGHVQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVKLHYCVSCAIHS 81          
BLAST of CB304573 vs. ExPASy Swiss-Prot
Match: RS26_MACFA (40S ribosomal protein S26 OS=Macaca fascicularis GN=RPS26 PE=3 SV=3)

HSP 1 Score: 120.553 bits (301), Expect = 6.965e-27
Identity = 53/75 (70.67%), Postives = 62/75 (82.67%), Query Frame = -3
Query:  411 NGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHS 635
            N GR K GRGHV+ IRC+NC +C PKDKAIK+F++RNIVE AAVRD+ EA V+D Y LPKLY K+ YCVSCAIHS
Sbjct:    7 NNGRAKKGRGHVQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVKLHYCVSCAIHS 81          
BLAST of CB304573 vs. ExPASy Swiss-Prot
Match: RS26_HUMAN (40S ribosomal protein S26 OS=Homo sapiens GN=RPS26 PE=1 SV=3)

HSP 1 Score: 120.553 bits (301), Expect = 6.965e-27
Identity = 53/75 (70.67%), Postives = 62/75 (82.67%), Query Frame = -3
Query:  411 NGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHS 635
            N GR K GRGHV+ IRC+NC +C PKDKAIK+F++RNIVE AAVRD+ EA V+D Y LPKLY K+ YCVSCAIHS
Sbjct:    7 NNGRAKKGRGHVQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVKLHYCVSCAIHS 81          
BLAST of CB304573 vs. ExPASy Swiss-Prot
Match: RS26_BOVIN (40S ribosomal protein S26 OS=Bos taurus GN=RPS26 PE=3 SV=3)

HSP 1 Score: 120.553 bits (301), Expect = 6.965e-27
Identity = 53/75 (70.67%), Postives = 62/75 (82.67%), Query Frame = -3
Query:  411 NGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHS 635
            N GR K GRGHV+ IRC+NC +C PKDKAIK+F++RNIVE AAVRD+ EA V+D Y LPKLY K+ YCVSCAIHS
Sbjct:    7 NNGRAKKGRGHVQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVKLHYCVSCAIHS 81          
BLAST of CB304573 vs. ExPASy Swiss-Prot
Match: RS26_SHEEP (40S ribosomal protein S26 OS=Ovis aries GN=RPS26 PE=3 SV=3)

HSP 1 Score: 119.783 bits (299), Expect = 1.188e-26
Identity = 53/75 (70.67%), Postives = 62/75 (82.67%), Query Frame = -3
Query:  411 NGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHS 635
            N GR K GRGHV+ IRC+NC +C PKDKAIK+F++RNIVE AAVRD+ EA V+D Y LPKLY K+ YCVSCAIHS
Sbjct:    7 NNGRAKKGRGHVQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEAGVFDAYVLPKLYVKLHYCVSCAIHS 81          
BLAST of CB304573 vs. ExPASy Swiss-Prot
Match: RS26_CRICR (40S ribosomal protein S26 OS=Cricetus cricetus GN=RPS26 PE=3 SV=3)

HSP 1 Score: 119.013 bits (297), Expect = 2.027e-26
Identity = 52/75 (69.33%), Postives = 62/75 (82.67%), Query Frame = -3
Query:  411 NGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHS 635
            N GR K GRGHV+ IRC+NC +C PKDKAIK+F++RNIVE AAVRD+ EA V+D Y LPKLY ++ YCVSCAIHS
Sbjct:    7 NNGRAKKGRGHVQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVELHYCVSCAIHS 81          
The following BLAST results are available for this feature:
BLAST of CB304573 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
RS26_BRUPA3.126e-2772.0040S ribosomal protein S26 (Fragment) OS=Brugia pah... [more]
RS26_RAT6.965e-2770.6740S ribosomal protein S26 OS=Rattus norvegicus GN=... [more]
RS26_PIG6.965e-2770.6740S ribosomal protein S26 OS=Sus scrofa GN=RPS26 P... [more]
RS26_NEUCR6.965e-2770.2740S ribosomal protein S26E OS=Neurospora crassa GN... [more]
RS26_MOUSE6.965e-2770.6740S ribosomal protein S26 OS=Mus musculus GN=Rps26... [more]
RS26_MACFA6.965e-2770.6740S ribosomal protein S26 OS=Macaca fascicularis G... [more]
RS26_HUMAN6.965e-2770.6740S ribosomal protein S26 OS=Homo sapiens GN=RPS26... [more]
RS26_BOVIN6.965e-2770.6740S ribosomal protein S26 OS=Bos taurus GN=RPS26 P... [more]
RS26_SHEEP1.188e-2670.6740S ribosomal protein S26 OS=Ovis aries GN=RPS26 P... [more]
RS26_CRICR2.027e-2669.3340S ribosomal protein S26 OS=Cricetus cricetus GN=... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IVaR_G08 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IVaR_G08 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304573 ID=CB304573; Name=CB304573; organism=Citrus sinensis; type=EST; length=637bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGCAAAACAGAACAACAACAA
TTTTACTTCAATCACTCCATCAAAATTCTCTAGGGTTTTGATTCAAACTT
GCGACAGTAAACAGTTCTCCGATGCACGACAACAAAACACAAAACTAACA
TAAAAGTTTGCAGGGCTCTAATTAAACAGACCCACATATCTGATACCACC
ACATAAAAATCCCAAAAGCCTCAAAGGACCAAAAGCACCGACAGCAAAAA
GCTTTCAAGCACGAGCAGCAGCTGGAGCTCCAGCTGGACCACCAGCACGT
GGGCCTTGACCAAGAGCACCACCAGCCTTTGGCACATCATCCCTGCGCCT
GAAGCGTTGTGGGGGCTCACGGATCCTCCTGTTAGTACGGGAACGAACTC
TCACCACATGAGAGTGGATCGCACACGAGACGCAGTACTGCATCTTAGCA
TATAACTTAGGAAGAGTGTAACCGTCATAAACACACGCCTCCTGAACATC
CCTAACAGCAGCTTGCTCAACAATGTTCCTCACCAAAAACCTCTTAATCG
CCTTGTCCTTAGGGCAGCATTTGCCGCAGTTAGAGCAGCGGATGAACTTG
ACATGGCCACGGCCGTGCTTGTTCCTTCCTCCGTTCC
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