CB304644

Overview
NameCB304644
Unique NameCB304644
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length477
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304644 vs. ExPASy Swiss-Prot
Match: YQEF_ECOLI (Probable acetyl-CoA acetyltransferase OS=Escherichia coli (strain K12) GN=yqeF PE=3 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 3.913e-29
Identity = 65/125 (52.00%), Postives = 84/125 (67.20%), Query Frame = -2
Query:   27 RDVCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANAKPLLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLT 401
            +DV IVG  RTP+G F G+L+  SA +LGS+ ++  ++R       V EV  G VL+A  GQ PARQ+A+  G+PNSV   TIN VC SG+KA+ LA Q+IQ G  DIV+AGG E+MS AP  LT
Sbjct:    2 KDVVIVGALRTPIGCFRGALAGHSAVELGSLVVKALIERTGVPAYAVDEVILGQVLTAGAGQNPARQSAIKGGLPNSVSAITINDVCGSGLKALHLATQAIQCGEADIVIAGGQENMSRAPHVLT 126          
BLAST of CB304644 vs. ExPASy Swiss-Prot
Match: THIL_MYCLE (Probable acetyl-CoA acetyltransferase OS=Mycobacterium leprae GN=fadA4 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 8.160e-27
Identity = 66/120 (55.00%), Postives = 80/120 (66.67%), Query Frame = -2
Query:   30 IVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANAKPLLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYL 389
            IV  ARTP+G  +GSL   SA+ LG+I I  ALK+AN  P +VQ V  G VL+A  GQ PARQAA+ AGI   V   TINK+C SG+ A+ LA Q I+ G  D+VVAGG ESM+ AP  L
Sbjct:    6 IVTGARTPIGKLMGSLKDFSASDLGAITIAAALKKANVAPSIVQYVIIGQVLTAGAGQMPARQAAVAAGIGWDVPALTINKMCLSGLDAIALADQLIRAGEFDVVVAGGQESMTKAPHLL 125          
BLAST of CB304644 vs. ExPASy Swiss-Prot
Match: THIC_RAT (Acetyl-CoA acetyltransferase, cytosolic OS=Rattus norvegicus GN=Acat2 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.066e-26
Identity = 64/119 (53.78%), Postives = 81/119 (68.07%), Query Frame = -2
Query:   39 VCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANAKPLLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAP 395
            V I+  ART +G F G+LS+V    LG+  I+  L+RA   P  V EV FG+VL+A  GQ P RQA++GAGIP SV   +   +C SG+KAV LAAQSI +G + IVVAGGME+MS AP
Sbjct:    8 VVIISAARTAIGSFNGALSTVPVHNLGTTVIKEVLQRAKVAPEEVSEVIFGHVLTAGCGQNPTRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQSIAMGDSTIVVAGGMENMSKAP 126          
BLAST of CB304644 vs. ExPASy Swiss-Prot
Match: THIC_MOUSE (Acetyl-CoA acetyltransferase, cytosolic OS=Mus musculus GN=Acat2 PE=1 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 1.066e-26
Identity = 64/119 (53.78%), Postives = 82/119 (68.91%), Query Frame = -2
Query:   39 VCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANAKPLLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAP 395
            V IV  ART +G F G+LS+V   ++G+  I+  L+RA   P  V EV FG+VL+A  GQ P RQA++GAGIP SV   +   +C SG+KAV LAAQSI +G + IVVAGGME+MS AP
Sbjct:    8 VVIVSAARTAIGSFNGALSTVPVHEMGTTVIKEVLQRAKVAPEEVSEVIFGHVLTAGCGQNPTRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQSIAMGDSTIVVAGGMENMSKAP 126          
BLAST of CB304644 vs. ExPASy Swiss-Prot
Match: THLA_CLOAB (Acetyl-CoA acetyltransferase OS=Clostridium acetobutylicum GN=thlA PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.818e-26
Identity = 62/121 (51.24%), Postives = 80/121 (66.12%), Query Frame = -2
Query:   39 RDVCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANAKPLLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAP 401
            ++V I    RT +G +  SL  V A  LG+ AI+ A+K+A  KP  V EV  GNVL A LGQ PARQA+  AG+P  +   TINKVC SG++ V LAAQ I+ G  D+++AGGME+MS AP
Sbjct:    2 KEVVIASAVRTAIGSYGKSLKDVPAVDLGATAIKEAVKKAGIKPEDVNEVILGNVLQAGLGQNPARQASFKAGLPVEIPAMTINKVCGSGLRTVSLAAQIIKAGDADVIIAGGMENMSRAP 122          
BLAST of CB304644 vs. ExPASy Swiss-Prot
Match: THIC_HUMAN (Acetyl-CoA acetyltransferase, cytosolic OS=Homo sapiens GN=ACAT2 PE=1 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 1.818e-26
Identity = 65/119 (54.62%), Postives = 80/119 (67.23%), Query Frame = -2
Query:   39 VCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANAKPLLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAP 395
            V IV  ART +G F G+L++V    LGS  I+  LKRA   P  V EV FG+VL+A  GQ P RQA++GAGIP SV   +   +C SG+KAV LA QSI +G + IVVAGGME+MS AP
Sbjct:    8 VVIVSAARTIIGSFNGALAAVPVQDLGSTVIKEVLKRATVAPEDVSEVIFGHVLAAGCGQNPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAVQSIGIGDSSIVVAGGMENMSKAP 126          
BLAST of CB304644 vs. ExPASy Swiss-Prot
Match: THIL_CHRVI (Acetyl-CoA acetyltransferase OS=Chromatium vinosum GN=phbA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 9.022e-26
Identity = 62/125 (49.60%), Postives = 82/125 (65.60%), Query Frame = -2
Query:   30 ARDVCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANAKPLLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYL 404
            + ++ IV   R+ +G F GSLSS+SAT++G+  ++  L R    P  + EV  G VL+A +GQ PARQ  L AG+P+SV   TINKVC SG+KAV LA Q+I  G  DIV+AGG ESMS +   L
Sbjct:    2 SENIVIVDAGRSAIGTFGGSLSSLSATEIGTAVLKGLLARTGLAPEQIDEVILGQVLTAGVGQNPARQTTLHAGLPHSVPAMTINKVCGSGLKAVHLAMQAIACGDADIVIAGGQESMSQSSHVL 126          
BLAST of CB304644 vs. ExPASy Swiss-Prot
Match: ATOB_ECOLI (Acetyl-CoA acetyltransferase OS=Escherichia coli (strain K12) GN=atoB PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 9.022e-26
Identity = 64/124 (51.61%), Postives = 81/124 (65.32%), Query Frame = -2
Query:   30 RDVCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANAKPLLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYL 401
            ++  IV   RT +G F GSL+S SA  LG+  I+ A++RA      V EV  GNVL A LGQ PARQA L +G+  +V   T+NKVC SG+K+V LAAQ+IQ G    +VAGGME+MS AP  L
Sbjct:    2 KNCVIVSAVRTAIGSFNGSLASTSAIDLGATVIKAAIERAKIDSQHVDEVIMGNVLQAGLGQNPARQALLKSGLAETVCGFTVNKVCGSGLKSVALAAQAIQAGQAQSIVAGGMENMSLAPYLL 125          
BLAST of CB304644 vs. ExPASy Swiss-Prot
Match: THIL_MYCTU (Probable acetyl-CoA acetyltransferase OS=Mycobacterium tuberculosis GN=fadA4 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 4.478e-25
Identity = 64/120 (53.33%), Postives = 81/120 (67.50%), Query Frame = -2
Query:   30 IVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANAKPLLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYL 389
            IV  ARTP+G  +GSL   SA++LG+IAI+ AL++AN    LV+ V  G VL+A  GQ PARQAA+ AGI   V   TINK+C SG+ A+ LA Q I+    D+VVAGG ESM+ AP  L
Sbjct:    2 IVAGARTPIGKLMGSLKDFSASELGAIAIKGALEKANVPASLVEYVIMGQVLTAGAGQMPARQAAVAAGIGWDVPALTINKMCLSGIDAIALADQLIRAREFDVVVAGGQESMTKAPHLL 121          
BLAST of CB304644 vs. ExPASy Swiss-Prot
Match: THIL_MYCBO (Probable acetyl-CoA acetyltransferase OS=Mycobacterium bovis GN=fadA4 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 4.478e-25
Identity = 64/120 (53.33%), Postives = 81/120 (67.50%), Query Frame = -2
Query:   30 IVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANAKPLLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYL 389
            IV  ARTP+G  +GSL   SA++LG+IAI+ AL++AN    LV+ V  G VL+A  GQ PARQAA+ AGI   V   TINK+C SG+ A+ LA Q I+    D+VVAGG ESM+ AP  L
Sbjct:    2 IVAGARTPIGKLMGSLKDFSASELGAIAIKGALEKANVPASLVEYVIMGQVLTAGAGQMPARQAAVAAGIGWDVPALTINKMCLSGIDAIALADQLIRAREFDVVVAGGQESMTKAPHLL 121          
The following BLAST results are available for this feature:
BLAST of CB304644 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
YQEF_ECOLI3.913e-2952.00Probable acetyl-CoA acetyltransferase OS=Escherich... [more]
THIL_MYCLE8.160e-2755.00Probable acetyl-CoA acetyltransferase OS=Mycobacte... [more]
THIC_RAT1.066e-2653.78Acetyl-CoA acetyltransferase, cytosolic OS=Rattus ... [more]
THIC_MOUSE1.066e-2653.78Acetyl-CoA acetyltransferase, cytosolic OS=Mus mus... [more]
THLA_CLOAB1.818e-2651.24Acetyl-CoA acetyltransferase OS=Clostridium acetob... [more]
THIC_HUMAN1.818e-2654.62Acetyl-CoA acetyltransferase, cytosolic OS=Homo sa... [more]
THIL_CHRVI9.022e-2649.60Acetyl-CoA acetyltransferase OS=Chromatium vinosum... [more]
ATOB_ECOLI9.022e-2651.61Acetyl-CoA acetyltransferase OS=Escherichia coli (... [more]
THIL_MYCTU4.478e-2553.33Probable acetyl-CoA acetyltransferase OS=Mycobacte... [more]
THIL_MYCBO4.478e-2553.33Probable acetyl-CoA acetyltransferase OS=Mycobacte... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IaR_H05 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IaR_H05 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304644 ID=CB304644; Name=CB304644; organism=Citrus sinensis; type=EST; length=477bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTGTTAGATACTTGGGCGCATTGGA
CATGCTTTCCATGCCACCCGCAACAACAATATCATTGATACCCAATTGAA
TACTCTGTGCAGCAAGCATTACAGCTTTCATCCCAGATGAACAGACTTTG
TTAATAGTGGTGCATACGACAGAATTAGGAATCCCAGCACCTAAGGCGGC
CTGTCTAGCGGGAGCCTGTCCTAAATTGGCGCTAAGAACGTTCCCAAAGA
AAACTTCTTGCACAAGGAGTGGTTTCGCGTTGGCCCTCTTAAGAGCACAT
TCGATAGCAATGGAACCCAGCTTTGTAGCTGAAACAGACGAGAGCGAGCC
AAGAAAGCCTCCCATTGGTGTACGTGCAACACCCACAATACAAACATCTC
GTGCTTTGATAGATTCTGAAGGTTCTAAAGGCACCATGCTAAATAGTATC
TTCAAAGAATCTTTAACTTTAAACCCC
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