CB304644

Overview
NameCB304644
Unique NameCB304644
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length477
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304644 vs. ExPASy Swiss-Prot
Match: THIK_ENCCU (3-ketoacyl-CoA thiolase, peroxisomal OS=Encephalitozoon cuniculi GN=FOX3 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 5.486e-15
Identity = 46/123 (37.40%), Postives = 70/123 (56.91%), Query Frame = -2
Query:   45 IKARDVCIVGVARTPMG-GFLGSLSSVSATKLGSIAIECALKRANAKPLLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSN 410
            I   DV +VG  RTP+G    G L S+   +L + AI   +++    P L++EV  G+ LS+  G   AR   L AG+P       IN++C SG+++V L A+ I+ G  +I +AGG ESM++
Sbjct:    2 ISHEDVVVVGALRTPIGRATRGKLRSLRNDELVTAAIRGIIEKTGIDPRLIEEVILGHCLSSMEGNVAARMGVLRAGVPVETPVMIINRLCGSGLESVGLIAEKIRSGRIEIGLAGGFESMTS 124          
BLAST of CB304644 vs. ExPASy Swiss-Prot
Match: PCAF_PSEAE (Beta-ketoadipyl-CoA thiolase OS=Pseudomonas aeruginosa GN=pcaF PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 9.358e-15
Identity = 49/124 (39.52%), Postives = 73/124 (58.87%), Query Frame = -2
Query:   39 ARDVCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKR-ANAKPLLVQEVFFGNVLSANL-GQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAP 404
            +R+V I    RTP+G F GSLS+V A  L ++ ++  ++R        + EVF G    A    +  AR A L AG+P SV   T+N++C+SGM A+  A ++I  G  ++ +AGG+ESMS AP
Sbjct:    2 SREVFICDAVRTPIGRFGGSLSAVRADDLAAVPLKALVERNPGVDWSALDEVFLGCANQAGEDNRNVARMALLLAGLPESVPGVTLNRLCASGMDAIGTAFRAIACGEMELAIAGGVESMSRAP 125          
BLAST of CB304644 vs. ExPASy Swiss-Prot
Match: PAAJ_ECOLI (Beta-ketoadipyl-CoA thiolase OS=Escherichia coli (strain K12) GN=paaJ PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 9.358e-15
Identity = 49/123 (39.84%), Postives = 72/123 (58.54%), Query Frame = -2
Query:   39 RDVCIVGVARTPMGGFLGSLSSVSATKLGSIAI-ECALKRANAKPLLVQEVFFGNVLSANL-GQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAP 401
            R+  I    RTP+G + G+LSSV A  L +I + E  ++        + +V  G    A    +  AR A L AG+P SV  TTIN++C SG+ A+  AA++I+ G  D+++AGG+ESMS AP
Sbjct:    2 REAFICDGIRTPIGRYGGALSSVRADDLAAIPLRELLVRNPRLDAECIDDVILGCANQAGEDNRNVARMATLLAGLPQSVSGTTINRLCGSGLDALGFAARAIKAGDGDLLIAGGVESMSRAP 124          
BLAST of CB304644 vs. ExPASy Swiss-Prot
Match: THIM_PONAB (3-ketoacyl-CoA thiolase, mitochondrial OS=Pongo abelii GN=ACAA2 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.222e-14
Identity = 45/122 (36.89%), Postives = 61/122 (50.00%), Query Frame = -2
Query:   39 RDVCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANAKPLLVQEVFFGNVLSANLGQAP-ARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAP 401
            R V +V   RTP G + G L   +AT L   A + AL      P  V  V  GNVL ++      AR   L  GIP      TIN++C SG ++++   Q I +   ++V+ GG ESMS AP
Sbjct:    5 RGVFVVAAKRTPFGAYGGLLKDFTATDLSEFAAKAALSAGKVSPETVDSVIMGNVLQSSSDAIYLARHVGLRVGIPKETPALTINRLCGSGFQSIVNGCQEICVKEAEVVLCGGTESMSQAP 126          
BLAST of CB304644 vs. ExPASy Swiss-Prot
Match: THIM_HUMAN (3-ketoacyl-CoA thiolase, mitochondrial OS=Homo sapiens GN=ACAA2 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 1.222e-14
Identity = 45/122 (36.89%), Postives = 61/122 (50.00%), Query Frame = -2
Query:   39 RDVCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANAKPLLVQEVFFGNVLSANLGQAP-ARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAP 401
            R V +V   RTP G + G L   +AT L   A + AL      P  V  V  GNVL ++      AR   L  GIP      TIN++C SG ++++   Q I +   ++V+ GG ESMS AP
Sbjct:    5 RGVFVVAAKRTPFGAYGGLLKDFTATDLSEFAAKAALSAGKVSPETVDSVIMGNVLQSSSDAIYLARHVGLRVGIPKETPALTINRLCGSGFQSIVNGCQEICVKEAEVVLCGGTESMSQAP 126          
BLAST of CB304644 vs. ExPASy Swiss-Prot
Match: PCAF_PSESB (Beta-ketoadipyl-CoA thiolase OS=Pseudomonas sp. (strain B13) GN=pcaF PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.222e-14
Identity = 49/124 (39.52%), Postives = 75/124 (60.48%), Query Frame = -2
Query:   39 ARDVCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKR-ANAKPLLVQEVFFGNVLSANL-GQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAP 404
            +R+V I    RTP+G F GSL++V A  L ++ ++  ++R        + EV+ G    A    +  AR A L AG+P+SV   T+N++C+SGM AV  A ++I  G  ++V+AGG+ESMS AP
Sbjct:    2 SREVYICDAVRTPIGRFGGSLAAVRADDLAAVPVKALVERNPQVDWSQLDEVYLGCANQAGEDNRNVARMALLLAGLPDSVPGVTLNRLCASGMDAVGTAFRAIASGEAELVIAGGVESMSRAP 125          
BLAST of CB304644 vs. ExPASy Swiss-Prot
Match: PCAF_PSEPU (Beta-ketoadipyl-CoA thiolase OS=Pseudomonas putida GN=pcaF PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.596e-14
Identity = 49/123 (39.84%), Postives = 72/123 (58.54%), Query Frame = -2
Query:   39 RDVCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANAKPL-LVQEVFFGNVLSANL-GQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAP 401
            RDV I    RTP+G F G+L+ V A  L ++ ++  ++   A     V EVFFG    A    +  AR A L AG+P S+   T+N++C+SGM A+  A ++I  G  ++ +AGG+ESMS AP
Sbjct:    2 RDVFICDAIRTPIGRFGGALAGVRADDLAAVPLKALIEPNPAVQWDQVDEVFFGCANQAGEDNRNVARMALLLAGLPESIPGVTLNRLCASGMDAIGTAFRAIASGEMELAIAGGVESMSRAP 124          
BLAST of CB304644 vs. ExPASy Swiss-Prot
Match: PCAF_ACIAD (Beta-ketoadipyl-CoA thiolase OS=Acinetobacter sp. (strain ADP1) GN=pcaF PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.723e-14
Identity = 45/119 (37.82%), Postives = 70/119 (58.82%), Query Frame = -2
Query:   39 IVGVARTPMGGFLGSLSSVSATKLGSIAIECALKR-ANAKPLLVQEVFFGNVLSANL-GQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAP 389
            IV   RTP G + G L++V A  LG+I I   ++R  +     V +V +G    A    +   R +AL AG+P  V  TT+N++C S + A+ +AA++I+ G   +++AGG+ESMS AP
Sbjct:    6 IVDAIRTPFGRYAGGLAAVRADDLGAIPIAALIERNPSVNWAQVDDVIYGCANQAGEDNRNVGRMSALLAGLPVEVPATTVNRLCGSSLDAIAMAARAIKAGEAHLIIAGGVESMSRAP 124          
BLAST of CB304644 vs. ExPASy Swiss-Prot
Match: PAAJ_ECOLX (Beta-ketoadipyl-CoA thiolase OS=Escherichia coli GN=paaJ PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.723e-14
Identity = 48/123 (39.02%), Postives = 71/123 (57.72%), Query Frame = -2
Query:   39 RDVCIVGVARTPMGGFLGSLSSVSATKLGSIAI-ECALKRANAKPLLVQEVFFGNVLSANL-GQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAP 401
            R+  I    RTP+G + G+LS V A  L +I + E  ++        + +V  G    A    +  AR A L AG+P SV  TTIN++C SG+ A+  AA++I+ G  D+++AGG+ESMS AP
Sbjct:    2 REAFICDGIRTPIGRYGGALSGVRADDLAAIPLRELLVRNPRLDAECIDDVILGCANQAGEDNRNVARMATLLAGLPQSVSGTTINRLCGSGLDALGFAARAIKAGDGDLLIAGGVESMSRAP 124          
BLAST of CB304644 vs. ExPASy Swiss-Prot
Match: FADA_BACSU (3-ketoacyl-CoA thiolase OS=Bacillus subtilis GN=fadA PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.723e-14
Identity = 47/123 (38.21%), Postives = 68/123 (55.28%), Query Frame = -2
Query:   39 RDVCIVGVARTPMG-GFLGSLSSVSATKLGSIAIECALKRANAKPLLVQEVFFGNVL-SANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAP 401
            ++  IV  ARTP+G    GSL++V    LG+I ++  LKRA      + ++  G     A  G   AR     AG+P +V   T+N+ CSSG++++  AA+ I LG  D  +AGG ESMS  P
Sbjct:    2 KEAVIVSGARTPVGKAKKGSLATVRPDDLGAICVKETLKRAGGYEGNIDDLIIGCATPEAEQGLNMARNIGALAGLPYTVPAITVNRYCSSGLQSIAYAAEKIMLGAYDTAIAGGAESMSQVP 124          
The following BLAST results are available for this feature:
BLAST of CB304644 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
THIK_ENCCU5.486e-1537.403-ketoacyl-CoA thiolase, peroxisomal OS=Encephalit... [more]
PCAF_PSEAE9.358e-1539.52Beta-ketoadipyl-CoA thiolase OS=Pseudomonas aerugi... [more]
PAAJ_ECOLI9.358e-1539.84Beta-ketoadipyl-CoA thiolase OS=Escherichia coli (... [more]
THIM_PONAB1.222e-1436.893-ketoacyl-CoA thiolase, mitochondrial OS=Pongo ab... [more]
THIM_HUMAN1.222e-1436.893-ketoacyl-CoA thiolase, mitochondrial OS=Homo sap... [more]
PCAF_PSESB1.222e-1439.52Beta-ketoadipyl-CoA thiolase OS=Pseudomonas sp. (s... [more]
PCAF_PSEPU1.596e-1439.84Beta-ketoadipyl-CoA thiolase OS=Pseudomonas putida... [more]
PCAF_ACIAD2.723e-1437.82Beta-ketoadipyl-CoA thiolase OS=Acinetobacter sp. ... [more]
PAAJ_ECOLX2.723e-1439.02Beta-ketoadipyl-CoA thiolase OS=Escherichia coli G... [more]
FADA_BACSU2.723e-1438.213-ketoacyl-CoA thiolase OS=Bacillus subtilis GN=fa... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IaR_H05 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IaR_H05 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304644 ID=CB304644; Name=CB304644; organism=Citrus sinensis; type=EST; length=477bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTGTTAGATACTTGGGCGCATTGGA
CATGCTTTCCATGCCACCCGCAACAACAATATCATTGATACCCAATTGAA
TACTCTGTGCAGCAAGCATTACAGCTTTCATCCCAGATGAACAGACTTTG
TTAATAGTGGTGCATACGACAGAATTAGGAATCCCAGCACCTAAGGCGGC
CTGTCTAGCGGGAGCCTGTCCTAAATTGGCGCTAAGAACGTTCCCAAAGA
AAACTTCTTGCACAAGGAGTGGTTTCGCGTTGGCCCTCTTAAGAGCACAT
TCGATAGCAATGGAACCCAGCTTTGTAGCTGAAACAGACGAGAGCGAGCC
AAGAAAGCCTCCCATTGGTGTACGTGCAACACCCACAATACAAACATCTC
GTGCTTTGATAGATTCTGAAGGTTCTAAAGGCACCATGCTAAATAGTATC
TTCAAAGAATCTTTAACTTTAAACCCC
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