CB304673

Overview
NameCB304673
Unique NameCB304673
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length640
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2117 contig Csv1_Contig2117:213..852. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB304673 vs. ExPASy Swiss-Prot
Match: RS15_PIG (40S ribosomal protein S15 OS=Sus scrofa GN=RPS15 PE=2 SV=2)

HSP 1 Score: 198.364 bits (503), Expect = 2.681e-50
Identity = 93/119 (78.15%), Postives = 110/119 (92.44%), Query Frame = -1 
Query:  284 DMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 640
            DMS ++L++L+SAR RRR  RGL+RK  +L+K+LRKAK+EAPP EKPE V+THLR+MII+PEM+GS++GVYNGKTFNQVEIKPEMIGHYL EFSI+YKPVKHGRPGIGATHSSRFIPLK
Sbjct:   27 DMSYEQLMQLYSARQRRRLNRGLRRKQHSLLKRLRKAKKEAPPMEKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK 145
[Close]
BLAST of CB304673 vs. ExPASy Swiss-Prot
Match: RS15_MOUSE (40S ribosomal protein S15 OS=Mus musculus GN=Rps15 PE=2 SV=2)

HSP 1 Score: 198.364 bits (503), Expect = 2.681e-50
Identity = 93/119 (78.15%), Postives = 110/119 (92.44%), Query Frame = -1 
Query:  284 DMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 640
            DMS ++L++L+SAR RRR  RGL+RK  +L+K+LRKAK+EAPP EKPE V+THLR+MII+PEM+GS++GVYNGKTFNQVEIKPEMIGHYL EFSI+YKPVKHGRPGIGATHSSRFIPLK
Sbjct:   27 DMSYEQLMQLYSARQRRRLNRGLRRKQHSLLKRLRKAKKEAPPMEKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK 145
[Close]
BLAST of CB304673 vs. ExPASy Swiss-Prot
Match: RS15_MESAU (40S ribosomal protein S15 OS=Mesocricetus auratus GN=RPS15 PE=2 SV=2)

HSP 1 Score: 198.364 bits (503), Expect = 2.681e-50
Identity = 93/119 (78.15%), Postives = 110/119 (92.44%), Query Frame = -1 
Query:  284 DMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 640
            DMS ++L++L+SAR RRR  RGL+RK  +L+K+LRKAK+EAPP EKPE V+THLR+MII+PEM+GS++GVYNGKTFNQVEIKPEMIGHYL EFSI+YKPVKHGRPGIGATHSSRFIPLK
Sbjct:   27 DMSYEQLMQLYSARQRRRLNRGLRRKQHSLLKRLRKAKKEAPPMEKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK 145
[Close]
BLAST of CB304673 vs. ExPASy Swiss-Prot
Match: RS15_HUMAN (40S ribosomal protein S15 OS=Homo sapiens GN=RPS15 PE=1 SV=2)

HSP 1 Score: 198.364 bits (503), Expect = 2.681e-50
Identity = 93/119 (78.15%), Postives = 110/119 (92.44%), Query Frame = -1 
Query:  284 DMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 640
            DMS ++L++L+SAR RRR  RGL+RK  +L+K+LRKAK+EAPP EKPE V+THLR+MII+PEM+GS++GVYNGKTFNQVEIKPEMIGHYL EFSI+YKPVKHGRPGIGATHSSRFIPLK
Sbjct:   27 DMSYEQLMQLYSARQRRRLNRGLRRKQHSLLKRLRKAKKEAPPMEKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK 145
[Close]
BLAST of CB304673 vs. ExPASy Swiss-Prot
Match: RS15_CHICK (40S ribosomal protein S15 OS=Gallus gallus GN=RPS15 PE=2 SV=2)

HSP 1 Score: 198.364 bits (503), Expect = 2.681e-50
Identity = 93/119 (78.15%), Postives = 110/119 (92.44%), Query Frame = -1 
Query:  284 DMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 640
            DMS ++L++L+SAR RRR  RGL+RK  +L+K+LRKAK+EAPP EKPE V+THLR+MII+PEM+GS++GVYNGKTFNQVEIKPEMIGHYL EFSI+YKPVKHGRPGIGATHSSRFIPLK
Sbjct:   27 DMSYEQLMQLYSARQRRRLNRGLRRKQHSLLKRLRKAKKEAPPMEKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK 145
[Close]
BLAST of CB304673 vs. ExPASy Swiss-Prot
Match: RS15_BOVIN (40S ribosomal protein S15 OS=Bos taurus GN=RPS15 PE=2 SV=3)

HSP 1 Score: 197.208 bits (500), Expect = 5.974e-50
Identity = 92/119 (77.31%), Postives = 110/119 (92.44%), Query Frame = -1 
Query:  284 DMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 640
            DMS ++L++L+SAR RRR  RGL+RK  +L+K+LRKAK++APP EKPE V+THLR+MII+PEM+GS++GVYNGKTFNQVEIKPEMIGHYL EFSI+YKPVKHGRPGIGATHSSRFIPLK
Sbjct:   27 DMSYEQLMQLYSARQRRRLNRGLRRKQHSLLKRLRKAKKDAPPMEKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK 145
[Close]
BLAST of CB304673 vs. ExPASy Swiss-Prot
Match: RS15_PODAN (40S ribosomal protein S15 OS=Podospora anserina GN=RPS15 PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.270e-49
Identity = 91/119 (76.47%), Postives = 107/119 (89.92%), Query Frame = -1 
Query:  284 DMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 640
            D+++DEL  +  ARARR+  RGLKR+PM LIKKLRKAK+EA P EKP+ V+THLR+MI+VPEMIGS++G+Y+GK FNQVEIKPEM+GHYL EFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct:   34 DLTSDELRDVVHARARRKINRGLKRRPMGLIKKLRKAKQEAKPNEKPDLVKTHLRDMIVVPEMIGSVVGIYSGKEFNQVEIKPEMVGHYLGEFSISYKPVKHGRPGIGATHSSRFIPLK 152
[Close]
BLAST of CB304673 vs. ExPASy Swiss-Prot
Match: RS15_XENLA (40S ribosomal protein S15 OS=Xenopus laevis GN=rps15 PE=2 SV=3)

HSP 1 Score: 192.971 bits (489), Expect = 1.127e-48
Identity = 89/119 (74.79%), Postives = 108/119 (90.76%), Query Frame = -1 
Query:  284 DMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 640
            DMS +++++L+ AR RRR  RGL+RK  +L+K+LRKAK+EAPP EKPE ++THLR+MII+PEM+GS++GVYNGK FNQVEIKPEMIGHYL EFSI+YKPVKHGRPGIGATHSSRFIPLK
Sbjct:   27 DMSYEQVMQLYCARQRRRLNRGLRRKQNSLLKRLRKAKKEAPPMEKPEVIKTHLRDMIILPEMVGSMVGVYNGKAFNQVEIKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK 145
[Close]
BLAST of CB304673 vs. ExPASy Swiss-Prot
Match: RS15_XIPMA (40S ribosomal protein S15 OS=Xiphophorus maculatus GN=rps15 PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 2.510e-48
Identity = 89/119 (74.79%), Postives = 107/119 (89.92%), Query Frame = -1 
Query:  284 DMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 640
            DMS ++L++L+ AR RRR  RGL+RK  +L+K+L KAK+EAPP EKPE V+THLR+M+I+PEM+GS++GVYNGKTFNQVEIKPEM GHYL EFSI+YKPVKHGRPGIGATHSSRFIPLK
Sbjct:   27 DMSYEQLMQLYCARQRRRLNRGLRRKHQSLLKRLPKAKKEAPPMEKPEVVKTHLRDMVILPEMVGSMVGVYNGKTFNQVEIKPEMCGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK 145
[Close]
BLAST of CB304673 vs. ExPASy Swiss-Prot
Match: RS15B_SCHPO (40S ribosomal protein S15-B OS=Schizosaccharomyces pombe GN=rps15b PE=1 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 1.989e-45
Identity = 87/119 (73.11%), Postives = 99/119 (83.19%), Query Frame = -1 
Query:  284 DMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 640
            D+S ++LV LF ARARRR  RGL       I+KLRKAK EAP  EKP  V+THLRNMII+PEM+GS++G+YNGK FNQVEI+PEMIGHYL EFSI+YKP KHGRPGIGATHSSRFIPLK
Sbjct:   36 DLSAEQLVDLFHARARRRMLRGLGPNASRFIRKLRKAKSEAPLNEKPATVKTHLRNMIILPEMVGSVVGIYNGKLFNQVEIRPEMIGHYLGEFSITYKPTKHGRPGIGATHSSRFIPLK 154
The following BLAST results are available for this feature:
BLAST of CB304673 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RS15_PIG2.681e-5078.1540S ribosomal protein S15 OS=Sus scrofa GN=RPS15 P... [more]
RS15_MOUSE2.681e-5078.1540S ribosomal protein S15 OS=Mus musculus GN=Rps15... [more]
RS15_MESAU2.681e-5078.1540S ribosomal protein S15 OS=Mesocricetus auratus ... [more]
RS15_HUMAN2.681e-5078.1540S ribosomal protein S15 OS=Homo sapiens GN=RPS15... [more]
RS15_CHICK2.681e-5078.1540S ribosomal protein S15 OS=Gallus gallus GN=RPS1... [more]
RS15_BOVIN5.974e-5077.3140S ribosomal protein S15 OS=Bos taurus GN=RPS15 P... [more]
RS15_PODAN2.270e-4976.4740S ribosomal protein S15 OS=Podospora anserina GN... [more]
RS15_XENLA1.127e-4874.7940S ribosomal protein S15 OS=Xenopus laevis GN=rps... [more]
RS15_XIPMA2.510e-4874.7940S ribosomal protein S15 OS=Xiphophorus maculatus... [more]
RS15B_SCHPO1.989e-4573.1140S ribosomal protein S15-B OS=Schizosaccharomyces... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIIaR_C04 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIIaR_C04 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304673 ID=CB304673; Name=CB304673; organism=Citrus sinensis; type=EST; length=640bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCCAAAATATGAAATAATTG
GCAGTGCCGTATGAAAACAAACACAACTTTTGGCTGACATAAGAATACAC
TCATATCCAAGCCACATAACACCTCTTTAAACTACACATTAGTTCCATTA
TCTAGATTAACAACTCAAACGCTAGTATTTAGTCCAACAACCAAAAAAAT
GTAACCACAAAAAATTTGATCAACTTCAATGTTTTCTGAAAATAACAATA
AGCTAAAATTCCAGATATCCAGCATACATCTCACTTAAGAGGAATGAACC
TTGAGGAATGGGTAGCACCAATACCAGGTCTACCGTGCTTCACAGGCTTG
TATGAGATAGAGAACTCAGCCAGGTAATGCCCAATCATTTCCGGCTTGAT
TTCAACCTGATTAAAGGTCTTGCCATTGTACACTCCAATAATGCTTCCAA
TCATTTCAGGAACAATGATCATGTTTCGCAAATGGGTGCGAACTGGTTCA
GGCTTCTCACCAGGCGGAGCCTCCCTTTTCGCCTTGCGAAGCTTCTTGAT
CAAAGCCATGGGCTTCCTCTTTAAACCCCTCTGAAACCTTCTGCGCGCAC
GTGCACTGAAGAGCTTGACGAGCTCATCATTGGACATATC
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