CB304673
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CB304673 vs. ExPASy Swiss-Prot
Match: RS19_PYRAE (30S ribosomal protein S19P OS=Pyrobaculum aerophilum GN=rps19p PE=3 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 1.750e-25 Identity = 63/119 (52.94%), Postives = 81/119 (68.07%), Query Frame = -1 Query: 284 DMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 640 +MS DE +KL AR RR +RGLK + L++K+RKAKR A G+K +RTH R+MII+PEM+G I VYNG T+ V I P IGHYL EF+++ K V+HG PG+ AT SS I K Sbjct: 41 NMSMDEFIKLLPARQRRSLKRGLKPEHRKLLEKIRKAKRLAAQGKKVV-IRTHCRDMIILPEMVGLTIHVYNGITYIPVFISPWHIGHYLGEFALTTKIVQHGEPGLKATRSSLHIAAK 158
BLAST of CB304673 vs. ExPASy Swiss-Prot
Match: RS19_NATPD (30S ribosomal protein S19P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps19p PE=3 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 3.899e-25 Identity = 56/119 (47.06%), Postives = 79/119 (66.39%), Query Frame = -1 Query: 284 DMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 640 +M DE+ +L AR RR +RGL + L+ + R+A E P+RTHLR+M I+P +G VYNG++F +VE++PEMIGHYL EF ++ V+HG+ GIGAT SS+F+PLK Sbjct: 25 EMELDEVAELLPARQRRTIKRGLSVEQEKLLDEAREAGEEETANN---PIRTHLRDMPILPRFVGLTFAVYNGQSFERVEVEPEMIGHYLGEFQLTRTSVEHGQAGIGATRSSKFVPLK 140
BLAST of CB304673 vs. ExPASy Swiss-Prot
Match: RS19_METB6 (30S ribosomal protein S19P OS=Methanoregula boonei (strain 6A8) GN=rps19p PE=3 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 3.899e-25 Identity = 58/118 (49.15%), Postives = 76/118 (64.41%), Query Frame = -1 Query: 284 MSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 637 M EL+ L ARARR+F RGL R L++K+R E +RTHLR MI++PEMIG I +YNGK F +VE +PE + HYL EF+++ K V HG GIGAT S+++PLK Sbjct: 31 MGLSELIPLMPARARRKFNRGLNRGEETLLEKIRGGD---------EKIRTHLREMIVMPEMIGKSIEIYNGKEFLKVEFQPESVFHYLGEFALTRKRVTHGSAGIGATRGSKYVPLK 139
BLAST of CB304673 vs. ExPASy Swiss-Prot
Match: RS19_HALLT (30S ribosomal protein S19P OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rps19p PE=3 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 3.899e-25 Identity = 55/119 (46.22%), Postives = 79/119 (66.39%), Query Frame = -1 Query: 284 DMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 640 +M DE+ +L AR RR RGL + L++K+R +E P+RTHLR+M I+PE +G VYNG +F +V+++PEMIGH+L EF ++ V+HG+ GIGAT SS+F+PLK Sbjct: 26 EMDVDEVAELLPARQRRSIVRGLGTEQQKLLEKVRSRDKETTADN---PIRTHLRDMPILPEFVGVTFSVYNGHSFERVQVEPEMIGHFLGEFHLTRSTVEHGQAGIGATRSSKFVPLK 141
BLAST of CB304673 vs. ExPASy Swiss-Prot
Match: RS19_HALMA (30S ribosomal protein S19P OS=Haloarcula marismortui GN=rps19p PE=1 SV=4) HSP 1 Score: 114.39 bits (285), Expect = 5.092e-25 Identity = 54/119 (45.38%), Postives = 81/119 (68.07%), Query Frame = -1 Query: 284 DMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 640 +M +E+ +L AR RR RGL + L++K R+A E + P+RTHLR+M +VPEM+G V++G+ F +V+++PEM+GHYL EF ++ V+HG+ GIGAT SS+F+PLK Sbjct: 25 EMELEEVAELLPARQRRSIVRGLTEEKHKLLEKAREAGEEETAND---PIRTHLRDMPVVPEMVGLTFAVHDGQNFERVKVEPEMLGHYLGEFQLTRSSVEHGQAGIGATRSSKFVPLK 140
BLAST of CB304673 vs. ExPASy Swiss-Prot
Match: RS19_METS5 (30S ribosomal protein S19P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps19p PE=3 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 6.651e-25 Identity = 53/119 (44.54%), Postives = 81/119 (68.07%), Query Frame = -1 Query: 284 DMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 640 +M D+ +KL AR RR ++G LI+K+RK +R++ + +P++TH+R+++I+PEM+G VYNGK F + ++ PEMIGHYL EFSI + V+HG PG+ AT SS F+ +K Sbjct: 24 NMPMDDFIKLLPARQRRSLRKGFTPSERTLIEKIRKIRRDS---KADKPIKTHVRSLVILPEMVGLKFAVYNGKQFVEFQVVPEMIGHYLGEFSIPIQKVEHGEPGLKATRSSLFMAMK 139
BLAST of CB304673 vs. ExPASy Swiss-Prot
Match: RS19_METMJ (30S ribosomal protein S19P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps19p PE=3 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 6.651e-25 Identity = 58/118 (49.15%), Postives = 79/118 (66.95%), Query Frame = -1 Query: 284 MSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 637 M+ EL+ L ARARR+F RGL R+ L+ LR E +RTHLR+MII+PEM+G I ++NGK F +VEI+PE + HYL EF+++ + V HG GIGAT SS+++PLK Sbjct: 29 MALSELLPLMPARARRKFDRGLSREHEKLLADLRSGD---------ENIRTHLRDMIIMPEMVGRSIEIHNGKEFQKVEIQPEAVFHYLGEFALTRRRVAHGSAGIGATRSSKYVPLK 137
BLAST of CB304673 vs. ExPASy Swiss-Prot
Match: RS19_SULSO (30S ribosomal protein S19P OS=Sulfolobus solfataricus GN=rps19p PE=3 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 1.134e-24 Identity = 55/119 (46.22%), Postives = 81/119 (68.07%), Query Frame = -1 Query: 284 DMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 640 +M DE +KL +R RR +RG L++K+RK +RE G+ + ++TH+RN++I+PE+IG + VYNGK F + + PEMIGHYL E+SI+ K V+HG PG+ AT SS F+ +K Sbjct: 24 NMPMDEFIKLLPSRQRRSLKRGFTDAQRHLLEKVRKYRRE---GKFNKTIKTHVRNLVILPELIGLKMAVYNGKEFVEFTVTPEMIGHYLGEYSITTKKVEHGEPGLKATRSSLFLAMK 139
BLAST of CB304673 vs. ExPASy Swiss-Prot
Match: RS19_PYRAR (30S ribosomal protein S19P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps19p PE=3 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 1.134e-24 Identity = 61/119 (51.26%), Postives = 80/119 (67.23%), Query Frame = -1 Query: 284 DMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 640 +M DE +KL AR RR +RGLK + L++K+RKAKR A G+K ++TH R+MII+PEM+G I VYNG T+ V I P IGHYL EF+++ K V+HG PG+ AT SS I K Sbjct: 42 NMPMDEFIKLLPARQRRSLKRGLKPEHRKLLEKIRKAKRLAAQGKKVV-IKTHCRDMIILPEMVGLTIQVYNGITYIPVYISPWHIGHYLGEFALTTKIVQHGEPGLKATRSSLHIAAK 159
BLAST of CB304673 vs. ExPASy Swiss-Prot
Match: RS19_HYPBU (30S ribosomal protein S19P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps19p PE=3 SV=2) HSP 1 Score: 113.235 bits (282), Expect = 1.134e-24 Identity = 60/118 (50.85%), Postives = 79/118 (66.95%), Query Frame = -1 Query: 284 MSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 637 M D+ +KL AR RR RGL L+ K+RKA+++ G+K V+TH+R+MII+PEM+G I VYNGK F V+I PEMIGHYL EFS + K V+HG PG+ AT S+ + LK Sbjct: 28 MPMDQFIKLLPARQRRSLLRGLTDAQRRLLWKIRKARQKMLQGKKVV-VKTHVRDMIILPEMVGLTIAVYNGKEFIPVKITPEMIGHYLGEFSPTCKQVQHGEPGLKATRSTLHVALK 144 The following BLAST results are available for this feature:
BLAST of CB304673 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 83
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Sequences
The
following sequences are available for this feature:
EST sequence >CB304673 ID=CB304673; Name=CB304673; organism=Citrus sinensis; type=EST; length=640bpback to top |