CB304673

Overview
NameCB304673
Unique NameCB304673
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length640
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2117 contig Csv1_Contig2117:213..852. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304673 vs. ExPASy Swiss-Prot
Match: RS19_PYRAE (30S ribosomal protein S19P OS=Pyrobaculum aerophilum GN=rps19p PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.750e-25
Identity = 63/119 (52.94%), Postives = 81/119 (68.07%), Query Frame = -1
Query:  284 DMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 640
            +MS DE +KL  AR RR  +RGLK +   L++K+RKAKR A  G+K   +RTH R+MII+PEM+G  I VYNG T+  V I P  IGHYL EF+++ K V+HG PG+ AT SS  I  K
Sbjct:   41 NMSMDEFIKLLPARQRRSLKRGLKPEHRKLLEKIRKAKRLAAQGKKVV-IRTHCRDMIILPEMVGLTIHVYNGITYIPVFISPWHIGHYLGEFALTTKIVQHGEPGLKATRSSLHIAAK 158          
BLAST of CB304673 vs. ExPASy Swiss-Prot
Match: RS19_NATPD (30S ribosomal protein S19P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps19p PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.899e-25
Identity = 56/119 (47.06%), Postives = 79/119 (66.39%), Query Frame = -1
Query:  284 DMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 640
            +M  DE+ +L  AR RR  +RGL  +   L+ + R+A  E        P+RTHLR+M I+P  +G    VYNG++F +VE++PEMIGHYL EF ++   V+HG+ GIGAT SS+F+PLK
Sbjct:   25 EMELDEVAELLPARQRRTIKRGLSVEQEKLLDEAREAGEEETANN---PIRTHLRDMPILPRFVGLTFAVYNGQSFERVEVEPEMIGHYLGEFQLTRTSVEHGQAGIGATRSSKFVPLK 140          
BLAST of CB304673 vs. ExPASy Swiss-Prot
Match: RS19_METB6 (30S ribosomal protein S19P OS=Methanoregula boonei (strain 6A8) GN=rps19p PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.899e-25
Identity = 58/118 (49.15%), Postives = 76/118 (64.41%), Query Frame = -1
Query:  284 MSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 637
            M   EL+ L  ARARR+F RGL R    L++K+R            E +RTHLR MI++PEMIG  I +YNGK F +VE +PE + HYL EF+++ K V HG  GIGAT  S+++PLK
Sbjct:   31 MGLSELIPLMPARARRKFNRGLNRGEETLLEKIRGGD---------EKIRTHLREMIVMPEMIGKSIEIYNGKEFLKVEFQPESVFHYLGEFALTRKRVTHGSAGIGATRGSKYVPLK 139          
BLAST of CB304673 vs. ExPASy Swiss-Prot
Match: RS19_HALLT (30S ribosomal protein S19P OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rps19p PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.899e-25
Identity = 55/119 (46.22%), Postives = 79/119 (66.39%), Query Frame = -1
Query:  284 DMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 640
            +M  DE+ +L  AR RR   RGL  +   L++K+R   +E        P+RTHLR+M I+PE +G    VYNG +F +V+++PEMIGH+L EF ++   V+HG+ GIGAT SS+F+PLK
Sbjct:   26 EMDVDEVAELLPARQRRSIVRGLGTEQQKLLEKVRSRDKETTADN---PIRTHLRDMPILPEFVGVTFSVYNGHSFERVQVEPEMIGHFLGEFHLTRSTVEHGQAGIGATRSSKFVPLK 141          
BLAST of CB304673 vs. ExPASy Swiss-Prot
Match: RS19_HALMA (30S ribosomal protein S19P OS=Haloarcula marismortui GN=rps19p PE=1 SV=4)

HSP 1 Score: 114.39 bits (285), Expect = 5.092e-25
Identity = 54/119 (45.38%), Postives = 81/119 (68.07%), Query Frame = -1
Query:  284 DMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 640
            +M  +E+ +L  AR RR   RGL  +   L++K R+A  E    +   P+RTHLR+M +VPEM+G    V++G+ F +V+++PEM+GHYL EF ++   V+HG+ GIGAT SS+F+PLK
Sbjct:   25 EMELEEVAELLPARQRRSIVRGLTEEKHKLLEKAREAGEEETAND---PIRTHLRDMPVVPEMVGLTFAVHDGQNFERVKVEPEMLGHYLGEFQLTRSSVEHGQAGIGATRSSKFVPLK 140          
BLAST of CB304673 vs. ExPASy Swiss-Prot
Match: RS19_METS5 (30S ribosomal protein S19P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps19p PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.651e-25
Identity = 53/119 (44.54%), Postives = 81/119 (68.07%), Query Frame = -1
Query:  284 DMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 640
            +M  D+ +KL  AR RR  ++G       LI+K+RK +R++   +  +P++TH+R+++I+PEM+G    VYNGK F + ++ PEMIGHYL EFSI  + V+HG PG+ AT SS F+ +K
Sbjct:   24 NMPMDDFIKLLPARQRRSLRKGFTPSERTLIEKIRKIRRDS---KADKPIKTHVRSLVILPEMVGLKFAVYNGKQFVEFQVVPEMIGHYLGEFSIPIQKVEHGEPGLKATRSSLFMAMK 139          
BLAST of CB304673 vs. ExPASy Swiss-Prot
Match: RS19_METMJ (30S ribosomal protein S19P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps19p PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.651e-25
Identity = 58/118 (49.15%), Postives = 79/118 (66.95%), Query Frame = -1
Query:  284 MSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 637
            M+  EL+ L  ARARR+F RGL R+   L+  LR            E +RTHLR+MII+PEM+G  I ++NGK F +VEI+PE + HYL EF+++ + V HG  GIGAT SS+++PLK
Sbjct:   29 MALSELLPLMPARARRKFDRGLSREHEKLLADLRSGD---------ENIRTHLRDMIIMPEMVGRSIEIHNGKEFQKVEIQPEAVFHYLGEFALTRRRVAHGSAGIGATRSSKYVPLK 137          
BLAST of CB304673 vs. ExPASy Swiss-Prot
Match: RS19_SULSO (30S ribosomal protein S19P OS=Sulfolobus solfataricus GN=rps19p PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.134e-24
Identity = 55/119 (46.22%), Postives = 81/119 (68.07%), Query Frame = -1
Query:  284 DMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 640
            +M  DE +KL  +R RR  +RG       L++K+RK +RE   G+  + ++TH+RN++I+PE+IG  + VYNGK F +  + PEMIGHYL E+SI+ K V+HG PG+ AT SS F+ +K
Sbjct:   24 NMPMDEFIKLLPSRQRRSLKRGFTDAQRHLLEKVRKYRRE---GKFNKTIKTHVRNLVILPELIGLKMAVYNGKEFVEFTVTPEMIGHYLGEYSITTKKVEHGEPGLKATRSSLFLAMK 139          
BLAST of CB304673 vs. ExPASy Swiss-Prot
Match: RS19_PYRAR (30S ribosomal protein S19P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps19p PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.134e-24
Identity = 61/119 (51.26%), Postives = 80/119 (67.23%), Query Frame = -1
Query:  284 DMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 640
            +M  DE +KL  AR RR  +RGLK +   L++K+RKAKR A  G+K   ++TH R+MII+PEM+G  I VYNG T+  V I P  IGHYL EF+++ K V+HG PG+ AT SS  I  K
Sbjct:   42 NMPMDEFIKLLPARQRRSLKRGLKPEHRKLLEKIRKAKRLAAQGKKVV-IKTHCRDMIILPEMVGLTIQVYNGITYIPVYISPWHIGHYLGEFALTTKIVQHGEPGLKATRSSLHIAAK 159          
BLAST of CB304673 vs. ExPASy Swiss-Prot
Match: RS19_HYPBU (30S ribosomal protein S19P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps19p PE=3 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.134e-24
Identity = 60/118 (50.85%), Postives = 79/118 (66.95%), Query Frame = -1
Query:  284 MSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 637
            M  D+ +KL  AR RR   RGL      L+ K+RKA+++   G+K   V+TH+R+MII+PEM+G  I VYNGK F  V+I PEMIGHYL EFS + K V+HG PG+ AT S+  + LK
Sbjct:   28 MPMDQFIKLLPARQRRSLLRGLTDAQRRLLWKIRKARQKMLQGKKVV-VKTHVRDMIILPEMVGLTIAVYNGKEFIPVKITPEMIGHYLGEFSPTCKQVQHGEPGLKATRSTLHVALK 144          
The following BLAST results are available for this feature:
BLAST of CB304673 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RS19_PYRAE1.750e-2552.9430S ribosomal protein S19P OS=Pyrobaculum aerophil... [more]
RS19_NATPD3.899e-2547.0630S ribosomal protein S19P OS=Natronomonas pharaon... [more]
RS19_METB63.899e-2549.1530S ribosomal protein S19P OS=Methanoregula boonei... [more]
RS19_HALLT3.899e-2546.2230S ribosomal protein S19P OS=Halorubrum lacusprof... [more]
RS19_HALMA5.092e-2545.3830S ribosomal protein S19P OS=Haloarcula marismort... [more]
RS19_METS56.651e-2544.5430S ribosomal protein S19P OS=Metallosphaera sedul... [more]
RS19_METMJ6.651e-2549.1530S ribosomal protein S19P OS=Methanoculleus maris... [more]
RS19_SULSO1.134e-2446.2230S ribosomal protein S19P OS=Sulfolobus solfatari... [more]
RS19_PYRAR1.134e-2451.2630S ribosomal protein S19P OS=Pyrobaculum arsenati... [more]
RS19_HYPBU1.134e-2450.8530S ribosomal protein S19P OS=Hyperthermus butylic... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIIaR_C04 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIIaR_C04 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304673 ID=CB304673; Name=CB304673; organism=Citrus sinensis; type=EST; length=640bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCCAAAATATGAAATAATTG
GCAGTGCCGTATGAAAACAAACACAACTTTTGGCTGACATAAGAATACAC
TCATATCCAAGCCACATAACACCTCTTTAAACTACACATTAGTTCCATTA
TCTAGATTAACAACTCAAACGCTAGTATTTAGTCCAACAACCAAAAAAAT
GTAACCACAAAAAATTTGATCAACTTCAATGTTTTCTGAAAATAACAATA
AGCTAAAATTCCAGATATCCAGCATACATCTCACTTAAGAGGAATGAACC
TTGAGGAATGGGTAGCACCAATACCAGGTCTACCGTGCTTCACAGGCTTG
TATGAGATAGAGAACTCAGCCAGGTAATGCCCAATCATTTCCGGCTTGAT
TTCAACCTGATTAAAGGTCTTGCCATTGTACACTCCAATAATGCTTCCAA
TCATTTCAGGAACAATGATCATGTTTCGCAAATGGGTGCGAACTGGTTCA
GGCTTCTCACCAGGCGGAGCCTCCCTTTTCGCCTTGCGAAGCTTCTTGAT
CAAAGCCATGGGCTTCCTCTTTAAACCCCTCTGAAACCTTCTGCGCGCAC
GTGCACTGAAGAGCTTGACGAGCTCATCATTGGACATATC
back to top