CB304739

Overview
NameCB304739
Unique NameCB304739
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length586
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB304739 vs. ExPASy Swiss-Prot
Match: H2B_DROSI (Histone H2B OS=Drosophila simulans GN=His2B PE=3 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 8.262e-37
Identity = 76/90 (84.44%), Postives = 84/90 (93.33%), Query Frame = -1 
Query:  179 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 448
            E+Y IYI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   33 ESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 122
[Close]
BLAST of CB304739 vs. ExPASy Swiss-Prot
Match: H2B_DROSE (Histone H2B OS=Drosophila sechellia GN=His2B PE=3 SV=3)

HSP 1 Score: 153.295 bits (386), Expect = 8.262e-37
Identity = 76/90 (84.44%), Postives = 84/90 (93.33%), Query Frame = -1 
Query:  179 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 448
            E+Y IYI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   33 ESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 122
[Close]
BLAST of CB304739 vs. ExPASy Swiss-Prot
Match: H2B_DROOR (Histone H2B OS=Drosophila orena GN=His2B PE=3 SV=3)

HSP 1 Score: 153.295 bits (386), Expect = 8.262e-37
Identity = 76/90 (84.44%), Postives = 84/90 (93.33%), Query Frame = -1 
Query:  179 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 448
            E+Y IYI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   33 ESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 122
[Close]
BLAST of CB304739 vs. ExPASy Swiss-Prot
Match: H2B_DROME (Histone H2B OS=Drosophila melanogaster GN=His2B PE=1 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 8.262e-37
Identity = 76/90 (84.44%), Postives = 84/90 (93.33%), Query Frame = -1 
Query:  179 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 448
            E+Y IYI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   33 ESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 122
[Close]
BLAST of CB304739 vs. ExPASy Swiss-Prot
Match: H2B_DROMA (Histone H2B OS=Drosophila mauritiana GN=His2B PE=3 SV=3)

HSP 1 Score: 153.295 bits (386), Expect = 8.262e-37
Identity = 76/90 (84.44%), Postives = 84/90 (93.33%), Query Frame = -1 
Query:  179 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 448
            E+Y IYI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   33 ESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 122
[Close]
BLAST of CB304739 vs. ExPASy Swiss-Prot
Match: H2B_DROHY (Histone H2B OS=Drosophila hydei GN=His2B PE=3 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 8.262e-37
Identity = 76/90 (84.44%), Postives = 84/90 (93.33%), Query Frame = -1 
Query:  179 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 448
            E+Y IYI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   33 ESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 122
[Close]
BLAST of CB304739 vs. ExPASy Swiss-Prot
Match: H2B_DROER (Histone H2B OS=Drosophila erecta GN=His2B PE=3 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 8.262e-37
Identity = 76/90 (84.44%), Postives = 84/90 (93.33%), Query Frame = -1 
Query:  179 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 448
            E+Y IYI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   33 ESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 122
[Close]
BLAST of CB304739 vs. ExPASy Swiss-Prot
Match: H2B_ANOGA (Histone H2B OS=Anopheles gambiae GN=AGAP012199 PE=2 SV=5)

HSP 1 Score: 153.295 bits (386), Expect = 8.262e-37
Identity = 76/90 (84.44%), Postives = 84/90 (93.33%), Query Frame = -1 
Query:  179 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 448
            E+Y IYI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   34 ESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 123
[Close]
BLAST of CB304739 vs. ExPASy Swiss-Prot
Match: H2B1C_HUMAN (Histone H2B type 1-C/E/F/G/I OS=Homo sapiens GN=HIST1H2BC PE=1 SV=3)

HSP 1 Score: 153.295 bits (386), Expect = 8.262e-37
Identity = 74/89 (83.15%), Postives = 84/89 (94.38%), Query Frame = -1 
Query:  182 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 448
            E+Y +Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TS
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTS 124
[Close]
BLAST of CB304739 vs. ExPASy Swiss-Prot
Match: H2B_CAIMO (Histone H2B OS=Cairina moschata PE=3 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 1.079e-36
Identity = 75/90 (83.33%), Postives = 84/90 (93.33%), Query Frame = -1 
Query:  179 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 448
            E+Y IY++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVR +LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRSLLPGELAKHAVSEGTKAVTKYTSS 125
The following BLAST results are available for this feature:
BLAST of CB304739 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2B_DROSI8.262e-3784.44Histone H2B OS=Drosophila simulans GN=His2B PE=3 S... [more]
H2B_DROSE8.262e-3784.44Histone H2B OS=Drosophila sechellia GN=His2B PE=3 ... [more]
H2B_DROOR8.262e-3784.44Histone H2B OS=Drosophila orena GN=His2B PE=3 SV=3[more]
H2B_DROME8.262e-3784.44Histone H2B OS=Drosophila melanogaster GN=His2B PE... [more]
H2B_DROMA8.262e-3784.44Histone H2B OS=Drosophila mauritiana GN=His2B PE=3... [more]
H2B_DROHY8.262e-3784.44Histone H2B OS=Drosophila hydei GN=His2B PE=3 SV=2[more]
H2B_DROER8.262e-3784.44Histone H2B OS=Drosophila erecta GN=His2B PE=3 SV=... [more]
H2B_ANOGA8.262e-3784.44Histone H2B OS=Anopheles gambiae GN=AGAP012199 PE=... [more]
H2B1C_HUMAN8.262e-3783.15Histone H2B type 1-C/E/F/G/I OS=Homo sapiens GN=HI... [more]
H2B_CAIMO1.079e-3683.33Histone H2B OS=Cairina moschata PE=3 SV=2[more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_B09 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_B09 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304739 ID=CB304739; Name=CB304739; organism=Citrus sinensis; type=EST; length=586bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATAGAAGACAATAAGTTTTC
ATTAATCTGTCCATAAGAAGCATTATCAGGAGCAAACCCTAGGCTAGGCG
GGGCGGCTAAAAAGTAACGAAAGGAACAATTTCAAAAGAACACGGAACAC
TAACAAGACAAAAAATTGCACAAAATCAAGAGCTCGTGAACTTGGTAACG
GCCTTGGTCCCCTCCGACACGGCGTGCTTGGCCAATTCACCGGGCAAGAC
CAATCTCACGGCGGTCTGGATCTCCCTCGACGTGATCGTCGGCTTCTTGT
TGTACCTAGCGAGACGAGACGCCTCTTGGGCTAATTTCTCGAAGATATCG
TTGATGAAACTGTTCATGATGCCCATGGCCTTGCTGGAGATACCGATATC
GGGATGAACCTGCTTCAGGACCTTGAAAATGTAGATCTTGTACGTCTCCA
CATTCTTCTTCAACTTCCTCTTCTTTTTCTCGACGCCGCCGCCATCTTTC
GAGATCTTCTTCTCGGCTTTCGGCCTCTTCTCGGCTGGGGCTTTCTCGGC
TACCGGCTTTTTCTCCGCTGGCTTCTTCTCGGCTTT
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