CB304781

Overview
NameCB304781
Unique NameCB304781
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length551
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304781_ssr157 microsatellite CB304781_ssr157:157..168. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13803 contig Csv1_Contig13803:83..633. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304781 vs. ExPASy Swiss-Prot
Match: NLTP_PYRCO (Non-specific lipid-transfer protein OS=Pyrus communis PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.103e-28
Identity = 56/107 (52.34%), Postives = 79/107 (73.83%), Query Frame = -2
Query:  221 ALLLCILVTAPVTNAITCGQVTASLAPRIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTNRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 541
            AL++ + +   V +AITC QV+A+LAP I ++R+GG  PP  CC+G++++NG A+TTPDRQAACNCLK   G+  G+ P  A  LP +CGV +PYKIS ST+C+ V+
Sbjct:   10 ALVVALCMAVSVAHAITCSQVSANLAPCINYVRSGGAVPPA-CCNGIKTINGLAKTTPDRQAACNCLKNLAGSVSGVNPGNAESLPGKCGVNVPYKISTSTNCATVK 115          
BLAST of CB304781 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUPE (Non-specific lipid-transfer protein 1 OS=Prunus persica PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.043e-27
Identity = 56/92 (60.87%), Postives = 72/92 (78.26%), Query Frame = -2
Query:  221 ITCGQVTASLAPRIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTNRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 496
            ITCGQV+++LAP IP++R GG  PP  CC+G+R++N  ARTTPDRQAACNCLK+   +  G+ PN AA LP +CGV IPYKIS ST+C+ V+
Sbjct:    1 ITCGQVSSALAPCIPYVRGGGAVPPA-CCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVHIPYKISASTNCATVK 91          
BLAST of CB304781 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLPN (Non-specific lipid-transfer protein 2 OS=Solanum pennellii GN=LTP2 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.780e-27
Identity = 60/110 (54.55%), Postives = 75/110 (68.18%), Query Frame = -2
Query:  221 LVCALLLCILVTAPVTNAITCGQVTASLAPRIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTNRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 550
            + C +LLC++V AP   A+TCGQVT++LAP +P+L   G  P   CC GV+ L G A+TT DRQ AC CLK A  +  G+    AA LPS C V IPYKISPSTDCS+V+
Sbjct:    7 IACFVLLCMVVVAPHAEALTCGQVTSTLAPCLPYLMNRG--PLGGCCGGVKGLLGQAQTTVDRQTACTCLKSAASSFTGLDLGKAASLPSTCSVNIPYKISPSTDCSKVQ 114          
BLAST of CB304781 vs. ExPASy Swiss-Prot
Match: NLTP2_TOBAC (Non-specific lipid-transfer protein 2 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.325e-27
Identity = 58/110 (52.73%), Postives = 76/110 (69.09%), Query Frame = -2
Query:  221 LVCALLLCILVTAPVTNAITCGQVTASLAPRIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTNRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 550
            + C ++LC++V AP   A++CGQV + LAP +P+L+  GR P   CC GV+ L GAA++  DR+ AC CLK A    +GI    AAGLP  CGV IPYKISPSTDCS+V+
Sbjct:    7 IACFVVLCMVVVAPHAEALSCGQVQSGLAPCLPYLQ--GRGPLGSCCGGVKGLLGAAKSLSDRKTACTCLKSAANAIKGIDMGKAAGLPGACGVNIPYKISPSTDCSKVQ 114          
BLAST of CB304781 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLLC (Non-specific lipid-transfer protein 2 OS=Solanum lycopersicum GN=LE16 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 6.764e-27
Identity = 57/110 (51.82%), Postives = 75/110 (68.18%), Query Frame = -2
Query:  221 LVCALLLCILVTAPVTNAITCGQVTASLAPRIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTNRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 550
            + C ++ C++V AP   +++CG+VT+ LAP +P+L   GR P   CC GV+ L GAA+T  DR+ AC CLK A  + +GI    AAGLP  CGV IPYKISPSTDCS V+
Sbjct:    7 IACFVVFCMVVVAPHAESLSCGEVTSGLAPCLPYLE--GRGPLGGCCGGVKGLLGAAKTPEDRKTACTCLKSAANSIKGIDTGKAAGLPGVCGVNIPYKISPSTDCSTVQ 114          
BLAST of CB304781 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLCI (Non-specific lipid-transfer protein 2 OS=Solanum chilense PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 6.764e-27
Identity = 60/110 (54.55%), Postives = 75/110 (68.18%), Query Frame = -2
Query:  221 LVCALLLCILVTAPVTNAITCGQVTASLAPRIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTNRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 550
            + C +LLC++V AP   A+TCGQVT++LAP +P+L   G  P   CC GV+ L G A+TT DRQAAC CLK A  +   +    AA LPS C V IPYKISPSTDCS+V+
Sbjct:    7 IACFVLLCMVVVAPHAEALTCGQVTSTLAPCLPYLMNRG--PLGGCCGGVKGLLGQAQTTVDRQAACACLKSAASSFTDLDLGKAASLPSTCNVNIPYKISPSTDCSKVQ 114          
BLAST of CB304781 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUAR (Non-specific lipid-transfer protein 1 OS=Prunus armeniaca PE=1 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 6.764e-27
Identity = 55/92 (59.78%), Postives = 71/92 (77.17%), Query Frame = -2
Query:  221 ITCGQVTASLAPRIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTNRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 496
            ITCGQV++SLAP I ++R GG  PP  CC+G+R++N  ARTTPDR+ ACNCLK+  G+  G+ PN AA LP +CGV IPYKIS ST+C+ V+
Sbjct:    1 ITCGQVSSSLAPCIGYVRGGGAVPPA-CCNGIRNVNNLARTTPDRRTACNCLKQLSGSISGVNPNNAAALPGKCGVNIPYKISASTNCATVK 91          
BLAST of CB304781 vs. ExPASy Swiss-Prot
Match: NLTP_SPIOL (Non-specific lipid-transfer protein OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 1.507e-26
Identity = 61/110 (55.45%), Postives = 74/110 (67.27%), Query Frame = -2
Query:  224 LVCALLLCILVTAPVTNA-ITCGQVTASLAPRIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTNRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 550
            L CA+LLCI+V AP   A ITCG V++ LAP I +L+ G       CC G+++LN AA TTPDR+ ACNCLK A    +GI    AAGLP  CGV IPY ISPST+C+ V
Sbjct:    9 LACAVLLCIVVAAPYAEAGITCGMVSSKLAPCIGYLKGGPL--GGGCCGGIKALNAAAATTPDRKTACNCLKSAANAIKGINYGKAAGLPGMCGVHIPYAISPSTNCNAV 116          
BLAST of CB304781 vs. ExPASy Swiss-Prot
Match: NLTP_CICAR (Non-specific lipid-transfer protein OS=Cicer arietinum PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.968e-26
Identity = 60/111 (54.05%), Postives = 78/111 (70.27%), Query Frame = -2
Query:  221 LVC-ALLLCILVTAPVTNAITCGQVTASLAPRIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTNRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 550
            +VC AL++CI++     +AITCG+V  +LAP + +L+ GG  P   CC GVR+LN AA TTPDRQAACNCLK A G+   +  N AA LP +C V IPYKIS ST+C+ +R
Sbjct:    6 VVCVALIMCIVIAPMAESAITCGRVDTALAPCLGYLQ-GGPGPSAQCCGGVRNLNSAAVTTPDRQAACNCLKSAAGSISRLNANNAAALPGKCVVNIPYKISTSTNCATIR 115          
BLAST of CB304781 vs. ExPASy Swiss-Prot
Match: NLTP4_LENCU (Non-specific lipid-transfer protein 4 (Fragment) OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.968e-26
Identity = 59/107 (55.14%), Postives = 76/107 (71.03%), Query Frame = -2
Query:  221 LLLCILVTAPVTN-AITCGQVTASLAPRIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTNRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 538
            L++C++V AP+   AI+CG VT+ L+P + +L TGG  P P CC GV+ L  AA TTPDRQAACNCLK A G+   +  N AA LP +CGV IPYKIS ST+C+ V+
Sbjct:    4 LVMCMVVIAPMAEGAISCGAVTSDLSPCLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIPYKISTSTNCNTVK 109          
The following BLAST results are available for this feature:
BLAST of CB304781 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
NLTP_PYRCO2.103e-2852.34Non-specific lipid-transfer protein OS=Pyrus commu... [more]
NLTP1_PRUPE1.043e-2760.87Non-specific lipid-transfer protein 1 OS=Prunus pe... [more]
NLTP2_SOLPN1.780e-2754.55Non-specific lipid-transfer protein 2 OS=Solanum p... [more]
NLTP2_TOBAC2.325e-2752.73Non-specific lipid-transfer protein 2 OS=Nicotiana... [more]
NLTP2_SOLLC6.764e-2751.82Non-specific lipid-transfer protein 2 OS=Solanum l... [more]
NLTP2_SOLCI6.764e-2754.55Non-specific lipid-transfer protein 2 OS=Solanum c... [more]
NLTP1_PRUAR6.764e-2759.78Non-specific lipid-transfer protein 1 OS=Prunus ar... [more]
NLTP_SPIOL1.507e-2655.45Non-specific lipid-transfer protein OS=Spinacia ol... [more]
NLTP_CICAR1.968e-2654.05Non-specific lipid-transfer protein OS=Cicer ariet... [more]
NLTP4_LENCU1.968e-2655.14Non-specific lipid-transfer protein 4 (Fragment) O... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_G10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_G10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304781 ID=CB304781; Name=CB304781; organism=Citrus sinensis; type=EST; length=551bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGACTCAAAACACAGATCGCG
TTTACATATTTAATATGACATAAAAAGCAAATATACAAACATGACATGAG
AGTGAAACTCATACAAGTGGAGACTCGTTCGGACAAAGAAATTAACATAG
ATATTCTTTATTTATTTATTCTTCTCAGTCAATCATACTTGGAAAGTCAC
AGAGCTCAAACTCAACTTCACCTGACCCTAGAGCAGTCGGTGCTGGGGCT
GATCTTGTAAGGAATTCTGACTCCACATTGACTAGGAAGGCCAGCGGCAA
CATTAGGTTTGATGCCGCGGTTTGTTCCGTAAGCTCGTTTCAAGCAGTTG
CATGCAGCTTGGCGGTCAGGGGTGGTTCTGGCGGCGCCGTTGAGAGACCT
GACGCCGCTACAGCATGGCGGTGGAGGAAAACGCCCTCCAGTTCTCAAGA
AAGGGATGCGTGGAGCCAAGGAGGCTGTCACCTGCCCGCATGTTATGGCA
TTAGTCACCGGGGCAGTCACCAGAATGCACAAAAGCAAAGCACAAACAAG
C
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