CB304781

Overview
NameCB304781
Unique NameCB304781
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length551
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304781_ssr157 microsatellite CB304781_ssr157:157..168. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13803 contig Csv1_Contig13803:83..633. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304781 vs. ExPASy Swiss-Prot
Match: NLTP_GERHY (Non-specific lipid-transfer protein OS=Gerbera hybrida PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.176e-25
Identity = 53/109 (48.62%), Postives = 71/109 (65.14%), Query Frame = -2
Query:  224 LVCALLLCILVTAPVTNAITCGQVTASLAPRIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTNRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 550
            ++C  + C++ +A   +AI+CGQVT+ L P   +L  GG  PP  CC+GVR LN AA+TTPDRQ AC CLK     N  I  N A  LP +CG+ I YKI+P+ DCS++
Sbjct:    8 VLCVAVACMVFSASYADAISCGQVTSGLVPCFGYLAAGGPVPPA-CCNGVRGLNNAAKTTPDRQTACGCLKGILAANTRINLNNANSLPGKCGISIGYKITPNIDCSKI 115          
BLAST of CB304781 vs. ExPASy Swiss-Prot
Match: NLTP1_ARATH (Non-specific lipid-transfer protein 1 OS=Arabidopsis thaliana GN=LTP1 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 2.842e-25
Identity = 59/115 (51.30%), Postives = 78/115 (67.83%), Query Frame = -2
Query:  221 LVCALLLCILVTAPVTN--AITCGQVTASLAPRIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLK---RAYGTNRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 550
            L C LL C++V  P+T+  A++CG V ++LA  I ++  GG  PP  CCSGV++LN  A+TTPDRQ ACNC++   RA G+  G+    AAG+P  CGV IPYKIS ST+C  VR
Sbjct:    7 LACLLLACMIVAGPITSNAALSCGSVNSNLAACIGYVLQGGVIPPA-CCSGVKNLNSIAKTTPDRQQACNCIQGAARALGS--GLNAGRAAGIPKACGVNIPYKISTSTNCKTVR 118          
BLAST of CB304781 vs. ExPASy Swiss-Prot
Match: NLTP_DAUCA (Non-specific lipid-transfer protein OS=Daucus carota GN=EP2 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.080e-24
Identity = 56/107 (52.34%), Postives = 73/107 (68.22%), Query Frame = -2
Query:  224 LLLCILVTAPVTNAI-TCGQVTASLAPRIPFLRTGGRFPPP-PCCSGVRSLNGAARTTPDRQAACNCLKRAYGTNRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 538
            ++  +L T P   A+ TCGQVT +LAP + +LR+    P P  CC+ VR LN AARTT D++ AC CLK+      G+  N AAGLP++CGV IPYKISP+TDC+RV
Sbjct:   13 VMYMVLATTPNAEAVLTCGQVTGALAPCLGYLRSQVNVPVPLTCCNVVRGLNNAARTTLDKRTACGCLKQTANAVTGLNLNAAAGLPARCGVNIPYKISPTTDCNRV 119          
BLAST of CB304781 vs. ExPASy Swiss-Prot
Match: NLTP_BETVU (Non-specific lipid-transfer protein OS=Beta vulgaris GN=IWF1' PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.080e-24
Identity = 53/107 (49.53%), Postives = 72/107 (67.29%), Query Frame = -2
Query:  224 CALLLCILVTAPVTNAITCGQVTASLAPRIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTNRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 544
            CAL++C++V AP+  AITCG V + LAP I +L+ G   P   CC G++SLN AA +  DR+ AC CLK A  + +GI    AA LP QCGV +PY ISP+T+C+ +
Sbjct:   11 CALVMCMMVAAPLAEAITCGLVASKLAPCIGYLQ-GAPGPSAACCGGIKSLNSAAASPADRKTACTCLKSAATSIKGINYGKAASLPRQCGVSVPYAISPNTNCNAI 116          
BLAST of CB304781 vs. ExPASy Swiss-Prot
Match: NLT2B_ORYSJ (Non-specific lipid-transfer protein 2B OS=Oryza sativa subsp. japonica GN=LTP2-B PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.842e-24
Identity = 57/111 (51.35%), Postives = 74/111 (66.67%), Query Frame = -2
Query:  224 LVCALLLCILVTAPVTN--AITCGQVTASLAPRIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTNRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 550
            ++ AL+  +L+  P T   AI+CGQV ++++P + + R GG  P   CCSGVRSLN AA TT DR+ ACNCLK   G+  G+    AA +PS+CGV IPY ISPS DCS V
Sbjct:    7 VLVALVAALLLAGPHTTMAAISCGQVNSAVSPCLSYAR-GGSGPSAACCSGVRSLNSAATTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 116          
BLAST of CB304781 vs. ExPASy Swiss-Prot
Match: NLTP3_ARATH (Non-specific lipid-transfer protein 3 OS=Arabidopsis thaliana GN=LTP3 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 4.103e-24
Identity = 51/106 (48.11%), Postives = 72/106 (67.92%), Query Frame = -2
Query:  221 LLLCILVTAPVTNAITCGQVTASLAPRIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTNRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 538
            L+L + + A V  AI+CG V  SLAP   +L  GG   PP CC+GV++LN  A+TTPDRQ AC C++    +  G+ P++A+GLP +CGV IPY IS ST+C+ ++
Sbjct:   11 LVLTVCIVASVDAAISCGTVAGSLAPCATYLSKGG-LVPPSCCAGVKTLNSMAKTTPDRQQACRCIQSTAKSISGLNPSLASGLPGKCGVSIPYPISMSTNCNNIK 115          
BLAST of CB304781 vs. ExPASy Swiss-Prot
Match: NLTP2_ORYSI (Non-specific lipid-transfer protein 2 OS=Oryza sativa subsp. indica GN=LTP2-A PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 4.103e-24
Identity = 57/111 (51.35%), Postives = 72/111 (64.86%), Query Frame = -2
Query:  224 LVCALLLCILVTAPVTN--AITCGQVTASLAPRIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTNRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 550
            LV  +   +L+  P T   AI+CGQV ++++P + + R GG  P   CCSGVRSLN AA TT DR+ ACNCLK   G+  G+    AA +PS+CGV IPY ISPS DCS V
Sbjct:    8 LVALVAAALLLAGPHTTMAAISCGQVNSAVSPCLSYAR-GGSGPSAACCSGVRSLNSAASTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 117          
BLAST of CB304781 vs. ExPASy Swiss-Prot
Match: NLTP1_SORBI (Non-specific lipid-transfer protein 1 OS=Sorghum bicolor GN=LTP1 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 4.103e-24
Identity = 56/108 (51.85%), Postives = 71/108 (65.74%), Query Frame = -2
Query:  224 VCALLLCILVTAPVTNAITCGQVTASLAPRIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTNRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 547
            V A ++ +L       AI+CGQV++++A  + + R  G  P   CCSGVRSLN AARTT DR+AACNCLK A     G+    AA +PS+CGV +PY IS STDCSRV
Sbjct:   10 VVAAVVVVLAATTSEAAISCGQVSSAIALCLSYARGQGFAPSAGCCSGVRSLNSAARTTADRRAACNCLKNAARGISGLNAGNAASIPSKCGVSVPYTISTSTDCSRV 117          
BLAST of CB304781 vs. ExPASy Swiss-Prot
Match: NLT2A_ORYSJ (Non-specific lipid-transfer protein 2A OS=Oryza sativa subsp. japonica GN=LTP2-A PE=3 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 4.103e-24
Identity = 57/111 (51.35%), Postives = 72/111 (64.86%), Query Frame = -2
Query:  224 LVCALLLCILVTAPVTN--AITCGQVTASLAPRIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTNRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 550
            LV  +   +L+  P T   AI+CGQV ++++P + + R GG  P   CCSGVRSLN AA TT DR+ ACNCLK   G+  G+    AA +PS+CGV IPY ISPS DCS V
Sbjct:    8 LVALVAAALLLAGPHTTMAAISCGQVNSAVSPCLSYAR-GGSGPSAACCSGVRSLNSAASTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 117          
BLAST of CB304781 vs. ExPASy Swiss-Prot
Match: NLT41_HORVU (Non-specific lipid-transfer protein 4.1 OS=Hordeum vulgare GN=LTP4.1 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 5.359e-24
Identity = 53/110 (48.18%), Postives = 72/110 (65.45%), Query Frame = -2
Query:  221 LVCALLLCILVTAPVTNAITCGQVTASLAPRIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTNRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 550
            LV   L+  ++      AI+CGQV+++L+P I + R  G  PP  CCSGV+ L GAA++T D+QAAC C+K A G   G+    AAG+PS CGV +PY IS S DCS++R
Sbjct:    9 LVLVALVAAMLLVAADAAISCGQVSSALSPCISYARGNGAKPPAACCSGVKRLAGAAQSTADKQAACKCIKSAAG---GLNAGKAAGIPSMCGVSVPYAISASVDCSKIR 115          
The following BLAST results are available for this feature:
BLAST of CB304781 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
NLTP_GERHY2.176e-2548.62Non-specific lipid-transfer protein OS=Gerbera hyb... [more]
NLTP1_ARATH2.842e-2551.30Non-specific lipid-transfer protein 1 OS=Arabidops... [more]
NLTP_DAUCA1.080e-2452.34Non-specific lipid-transfer protein OS=Daucus caro... [more]
NLTP_BETVU1.080e-2449.53Non-specific lipid-transfer protein OS=Beta vulgar... [more]
NLT2B_ORYSJ1.842e-2451.35Non-specific lipid-transfer protein 2B OS=Oryza sa... [more]
NLTP3_ARATH4.103e-2448.11Non-specific lipid-transfer protein 3 OS=Arabidops... [more]
NLTP2_ORYSI4.103e-2451.35Non-specific lipid-transfer protein 2 OS=Oryza sat... [more]
NLTP1_SORBI4.103e-2451.85Non-specific lipid-transfer protein 1 OS=Sorghum b... [more]
NLT2A_ORYSJ4.103e-2451.35Non-specific lipid-transfer protein 2A OS=Oryza sa... [more]
NLT41_HORVU5.359e-2448.18Non-specific lipid-transfer protein 4.1 OS=Hordeum... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_G10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_G10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304781 ID=CB304781; Name=CB304781; organism=Citrus sinensis; type=EST; length=551bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGACTCAAAACACAGATCGCG
TTTACATATTTAATATGACATAAAAAGCAAATATACAAACATGACATGAG
AGTGAAACTCATACAAGTGGAGACTCGTTCGGACAAAGAAATTAACATAG
ATATTCTTTATTTATTTATTCTTCTCAGTCAATCATACTTGGAAAGTCAC
AGAGCTCAAACTCAACTTCACCTGACCCTAGAGCAGTCGGTGCTGGGGCT
GATCTTGTAAGGAATTCTGACTCCACATTGACTAGGAAGGCCAGCGGCAA
CATTAGGTTTGATGCCGCGGTTTGTTCCGTAAGCTCGTTTCAAGCAGTTG
CATGCAGCTTGGCGGTCAGGGGTGGTTCTGGCGGCGCCGTTGAGAGACCT
GACGCCGCTACAGCATGGCGGTGGAGGAAAACGCCCTCCAGTTCTCAAGA
AAGGGATGCGTGGAGCCAAGGAGGCTGTCACCTGCCCGCATGTTATGGCA
TTAGTCACCGGGGCAGTCACCAGAATGCACAAAAGCAAAGCACAAACAAG
C
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