CB304781

Overview
NameCB304781
Unique NameCB304781
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length551
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304781_ssr157 microsatellite CB304781_ssr157:157..168. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13803 contig Csv1_Contig13803:83..633. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304781 vs. ExPASy Swiss-Prot
Match: NLTP3_PRUDU (Non-specific lipid-transfer protein 3 OS=Prunus dulcis PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.841e-22
Identity = 56/115 (48.70%), Postives = 72/115 (62.61%), Query Frame = -2
Query:  221 LVC--ALLLCILVTAP-VTNAITCGQVTASLAPRIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYG--TNRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 550
            LVC  A++ C+ V  P    A++CGQV  +L P I ++  GG   P  CC+GVRSL   A+TT DRQ+ CNCLK+A            +AAGLP +CGV IPYKISPSTDC  ++
Sbjct:   10 LVCLVAVMCCMAVGGPKAMAAVSCGQVVNNLTPCINYVANGGALNPS-CCTGVRSLYSLAQTTADRQSICNCLKQAVNGIPYTNANAGLAAGLPGKCGVNIPYKISPSTDCKSIK 123          
BLAST of CB304781 vs. ExPASy Swiss-Prot
Match: NLTP3_HORVU (Non-specific lipid-transfer protein 3 OS=Hordeum vulgare GN=LTP3 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 5.016e-22
Identity = 48/109 (44.04%), Postives = 71/109 (65.14%), Query Frame = -2
Query:  224 LVCALLLCILVTAPVTNAITCGQVTASLAPRIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTNRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 550
            LV   ++  ++      AI+CGQV+++L+P I + R  G  PP  CCSGV+ L GAA++T D+QAAC CLK    + +GI     +G+P +CGV +P+ IS STDC++V
Sbjct:    9 LVLVAMVAAMLLVATDAAISCGQVSSALSPCISYARGNGAKPPVACCSGVKRLAGAAQSTADKQAACRCLKSLATSIKGINMGKVSGVPGKCGVSVPFPISMSTDCNKV 117          
BLAST of CB304781 vs. ExPASy Swiss-Prot
Match: NLTP3_BRANA (Non-specific lipid-transfer protein 3 OS=Brassica napus GN=LTP3 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.117e-21
Identity = 55/112 (49.11%), Postives = 68/112 (60.71%), Query Frame = -2
Query:  221 LVCALLLCILVTAPVTN--AITCGQVTASLAPRIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTNRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 550
            L C +L C++V  P+    A++CG V+ +LA  I +L   G  P   CCSGV SLN  ARTTPDRQ AC CL  A      I    AAGLP  CGV IPYKIS +T+C+ V+
Sbjct:    7 LSCLVLACMIVAGPIATNAALSCGTVSGNLAACIGYLTQNGPVPTA-CCSGVTSLNNMARTTPDRQQACRCLVGAANALPTINVARAAGLPKACGVNIPYKISKTTNCNSVK 117          
BLAST of CB304781 vs. ExPASy Swiss-Prot
Match: NLTPB_BRAOT (Non-specific lipid-transfer protein B OS=Brassica oleracea var. italica GN=WAX9B PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.459e-21
Identity = 54/112 (48.21%), Postives = 69/112 (61.61%), Query Frame = -2
Query:  221 LVCALLLCILVTAPVTN--AITCGQVTASLAPRIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTNRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 550
            L C +L C++V  P+    A++CG V+ +LA  I +L   G  P   CC+GV +LN  ARTTPDRQ AC CL  A  +   +    AAGLP  CGV IPYKIS ST+C+ VR
Sbjct:    7 LSCLVLACMIVAGPIATNAALSCGTVSGNLAACIGYLTQNGPLPRG-CCTGVTNLNNMARTTPDRQQACRCLVGAANSFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          
BLAST of CB304781 vs. ExPASy Swiss-Prot
Match: NLTP1_BRANA (Non-specific lipid-transfer protein 1 OS=Brassica napus GN=LTP1 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.906e-21
Identity = 54/112 (48.21%), Postives = 68/112 (60.71%), Query Frame = -2
Query:  221 LVCALLLCILVTAPVTN--AITCGQVTASLAPRIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTNRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 550
            L C +L C++V  P+    A++CG V+ +LA  I +L   G  P   CC+GV +LN  ARTTPDRQ AC CL  A      +    AAGLP  CGV IPYKIS ST+C+ VR
Sbjct:    7 LSCLVLACMIVAGPIATNAALSCGTVSGNLAACIGYLTQNGPLPRG-CCTGVTNLNNMARTTPDRQQACRCLVGAANAFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          
BLAST of CB304781 vs. ExPASy Swiss-Prot
Match: NLTP_ELECO (Non-specific lipid-transfer protein OS=Eleusine coracana PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.246e-21
Identity = 50/93 (53.76%), Postives = 63/93 (67.74%), Query Frame = -2
Query:  224 AITCGQVTASLAPRIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNC-LKRAYGTNRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 499
            AI+CGQV++++ P + + R  G  P   C SGVRSLN AARTT DR+AACNC LK A     G+    A+ +P +CGVR+PY IS S DCSRV
Sbjct:    1 AISCGQVSSAIGPCLAYARGAGAAPSASCQSGVRSLNAAARTTADRRAACNCSLKSAASRVSGLNAGKASSIPGRCGVRLPYAISASIDCSRV 93          
BLAST of CB304781 vs. ExPASy Swiss-Prot
Match: NLTP8_HORVU (Non-specific lipid-transfer protein Cw18 OS=Hordeum vulgare GN=CW18 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 8.008e-20
Identity = 50/109 (45.87%), Postives = 66/109 (60.55%), Query Frame = -2
Query:  224 LVCALLLCILVTAPVTNAITCGQVTASLAPRIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTNRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 550
            LV  +   +LV A    AITCGQV+++L P   + +  G  P   CCSGV+ L G AR+T D+QA C CLK   G     +   AAG+PS+CGV +PY IS S DCS++
Sbjct:   11 LVALVAAMLLVAADA--AITCGQVSSALGPCAAYAKGSGTSPSAGCCSGVKRLAGLARSTADKQATCRCLKSVAGAYNAGR---AAGIPSRCGVSVPYTISASVDCSKI 114          
BLAST of CB304781 vs. ExPASy Swiss-Prot
Match: NLTP5_VITSX (Non-specific lipid-transfer protein P5 OS=Vitis sp. PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 8.008e-20
Identity = 46/91 (50.55%), Postives = 61/91 (67.03%), Query Frame = -2
Query:  224 ITCGQVTASLAPRIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTNRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 496
            ++CG V   LAP I +LR+ G  P   CC+GV++L  +A TT DR+ AC CL  A  +  G+   +AAGLP +CGV IPYKISPST+C +V
Sbjct:    1 LSCGDVATQLAPCINYLRSAGPLPVA-CCNGVKNLKNSAATTQDRRTACKCLINASKSISGVNFGLAAGLPGKCGVNIPYKISPSTNCDQV 90          
BLAST of CB304781 vs. ExPASy Swiss-Prot
Match: NLTPC_ARATH (Non-specific lipid-transfer protein 12 OS=Arabidopsis thaliana GN=LTP12 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.043e-19
Identity = 46/109 (42.20%), Postives = 66/109 (60.55%), Query Frame = -2
Query:  224 LVCALLLCILVTAPVTNAITCGQVTASLAPRIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTNRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 550
            + C ++L I + +P  + I CG VT++LA  + +L   G  P   CC GV+SL   A+TTPDR+  C CLK A    +G+  ++ A LP+ CGV IPY IS ST+C  +
Sbjct:    8 ITCLIVLTIYMASPTESTIQCGTVTSTLAQCLTYLTNSGPLPSQ-CCVGVKSLYQLAQTTPDRKQVCECLKLAGKEIKGLNTDLVAALPTTCGVSIPYPISFSTNCDSI 115          
BLAST of CB304781 vs. ExPASy Swiss-Prot
Match: NLTP2_ARATH (Non-specific lipid-transfer protein 2 OS=Arabidopsis thaliana GN=LTP2 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.043e-19
Identity = 54/113 (47.79%), Postives = 68/113 (60.18%), Query Frame = -2
Query:  221 LVCALLLCILVTAPVT-NAI-TCGQVTASLAPRIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAY-GTNRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 550
            L C +L C++V  P+T NA+ +CG V  +LA  I +L  G       CC+GV +L   A TTPDRQ AC CL+ A      G+    AAGLPS C V IPYKIS ST+C+ VR
Sbjct:    7 LACMVLACMIVAGPITANALMSCGTVNGNLAGCIAYLTRGAPLTQG-CCNGVTNLKNMASTTPDRQQACRCLQSAAKAVGPGLNTARAAGLPSACKVNIPYKISASTNCNTVR 118          
The following BLAST results are available for this feature:
BLAST of CB304781 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
NLTP3_PRUDU3.841e-2248.70Non-specific lipid-transfer protein 3 OS=Prunus du... [more]
NLTP3_HORVU5.016e-2244.04Non-specific lipid-transfer protein 3 OS=Hordeum v... [more]
NLTP3_BRANA1.117e-2149.11Non-specific lipid-transfer protein 3 OS=Brassica ... [more]
NLTPB_BRAOT1.459e-2148.21Non-specific lipid-transfer protein B OS=Brassica ... [more]
NLTP1_BRANA1.906e-2148.21Non-specific lipid-transfer protein 1 OS=Brassica ... [more]
NLTP_ELECO4.246e-2153.76Non-specific lipid-transfer protein OS=Eleusine co... [more]
NLTP8_HORVU8.008e-2045.87Non-specific lipid-transfer protein Cw18 OS=Hordeu... [more]
NLTP5_VITSX8.008e-2050.55Non-specific lipid-transfer protein P5 OS=Vitis sp... [more]
NLTPC_ARATH3.043e-1942.20Non-specific lipid-transfer protein 12 OS=Arabidop... [more]
NLTP2_ARATH3.043e-1947.79Non-specific lipid-transfer protein 2 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_G10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_G10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304781 ID=CB304781; Name=CB304781; organism=Citrus sinensis; type=EST; length=551bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGACTCAAAACACAGATCGCG
TTTACATATTTAATATGACATAAAAAGCAAATATACAAACATGACATGAG
AGTGAAACTCATACAAGTGGAGACTCGTTCGGACAAAGAAATTAACATAG
ATATTCTTTATTTATTTATTCTTCTCAGTCAATCATACTTGGAAAGTCAC
AGAGCTCAAACTCAACTTCACCTGACCCTAGAGCAGTCGGTGCTGGGGCT
GATCTTGTAAGGAATTCTGACTCCACATTGACTAGGAAGGCCAGCGGCAA
CATTAGGTTTGATGCCGCGGTTTGTTCCGTAAGCTCGTTTCAAGCAGTTG
CATGCAGCTTGGCGGTCAGGGGTGGTTCTGGCGGCGCCGTTGAGAGACCT
GACGCCGCTACAGCATGGCGGTGGAGGAAAACGCCCTCCAGTTCTCAAGA
AAGGGATGCGTGGAGCCAAGGAGGCTGTCACCTGCCCGCATGTTATGGCA
TTAGTCACCGGGGCAGTCACCAGAATGCACAAAAGCAAAGCACAAACAAG
C
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