CB304781

Overview
NameCB304781
Unique NameCB304781
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length551
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304781_ssr157 microsatellite CB304781_ssr157:157..168. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13803 contig Csv1_Contig13803:83..633. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304781 vs. ExPASy Swiss-Prot
Match: NLTP_AMACA (Non-specific lipid-transfer protein OS=Amaranthus caudatus PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.974e-19
Identity = 45/94 (47.87%), Postives = 62/94 (65.96%), Query Frame = -2
Query:  221 AITCGQVTASLAPRIPFLRTGGRFPPPP-CCSGVRSLNGAARTTPDRQAACNCLKRAYGTNRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 499
            A+TC  VT +L P + +L+  G  PPP  CC+GVRSL  AA+T  DR+ ACNC+K A    + +   VAA L SQCGVR+ Y +SP+ +C+ V+
Sbjct:    1 AVTCTVVTKALGPCMTYLKGTGATPPPANCCAGVRSLKAAAQTVADRRMACNCMKSAAQKTKSLNYKVAARLASQCGVRMSYSVSPNVNCNSVQ 94          
BLAST of CB304781 vs. ExPASy Swiss-Prot
Match: NLTP1_AMAHP (Non-specific lipid-transfer protein 1 OS=Amaranthus hypochondriacus PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.974e-19
Identity = 45/94 (47.87%), Postives = 62/94 (65.96%), Query Frame = -2
Query:  221 AITCGQVTASLAPRIPFLRTGGRFPPPP-CCSGVRSLNGAARTTPDRQAACNCLKRAYGTNRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 499
            A+TC  VT +L P + +L+  G  PPP  CC+GVRSL  AA+T  DR+ ACNC+K A    + +   VAA L SQCGVR+ Y +SP+ +C+ V+
Sbjct:    1 AVTCTVVTKALGPCMTYLKGTGATPPPANCCAGVRSLKAAAQTVADRRMACNCMKSAAQKTKSLNYKVAARLASQCGVRMSYSVSPNVNCNSVQ 94          
BLAST of CB304781 vs. ExPASy Swiss-Prot
Match: NLTP3_VITSX (Non-specific lipid-transfer protein P3 OS=Vitis sp. PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 8.854e-19
Identity = 45/91 (49.45%), Postives = 60/91 (65.93%), Query Frame = -2
Query:  224 ITCGQVTASLAPRIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTNRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 496
            ++CG V   +A  I +LR  G  P   CC+GV++L  +A TT DR+ AC CL  A  T  G+   +AAGLP++CGV IPYKISPST+C +V
Sbjct:    1 LSCGDVATQMASCINYLRGAGPLPAA-CCNGVKNLKNSATTTQDRRTACKCLISASKTISGVNFGLAAGLPAKCGVSIPYKISPSTNCDQV 90          
BLAST of CB304781 vs. ExPASy Swiss-Prot
Match: NLTP3_ORYSJ (Non-specific lipid-transfer protein 3 OS=Oryza sativa subsp. japonica GN=LTP110-A PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.510e-18
Identity = 42/106 (39.62%), Postives = 66/106 (62.26%), Query Frame = -2
Query:  224 ALLLCILVTAPVTNAITCGQVTASLAPRIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTNRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 541
            A++   +V    + A++CG VT+S+AP + ++      P   CCSGVR+LNG A ++ DR+ AC+CLK    + R +    AA +PS+CGV + + IS S DCS++
Sbjct:   15 AVVAAAVVAERASAAVSCGDVTSSIAPCLSYVMGRESSPSSSCCSGVRTLNGKASSSADRRTACSCLKNMASSFRNLNMGNAASIPSKCGVSVAFPISTSVDCSKI 120          
BLAST of CB304781 vs. ExPASy Swiss-Prot
Match: NLTP3_ORYSI (Non-specific lipid-transfer protein 3 OS=Oryza sativa subsp. indica GN=LTP110-A PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.510e-18
Identity = 42/106 (39.62%), Postives = 66/106 (62.26%), Query Frame = -2
Query:  224 ALLLCILVTAPVTNAITCGQVTASLAPRIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTNRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 541
            A++   +V    + A++CG VT+S+AP + ++      P   CCSGVR+LNG A ++ DR+ AC+CLK    + R +    AA +PS+CGV + + IS S DCS++
Sbjct:   15 AVVAAAVVAERASAAVSCGDVTSSIAPCLSYVMGRESSPSSSCCSGVRTLNGKASSSADRRTACSCLKNMASSFRNLNMGNAASIPSKCGVSVAFPISTSVDCSKI 120          
BLAST of CB304781 vs. ExPASy Swiss-Prot
Match: NLTP5_ARATH (Non-specific lipid-transfer protein 5 OS=Arabidopsis thaliana GN=LTP5 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.576e-18
Identity = 54/111 (48.65%), Postives = 69/111 (62.16%), Query Frame = -2
Query:  221 LLLCILVTAPVTN--AITCGQVTASLAPRIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLK---RAYGTNRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 538
            +++C+LVTAP+ +  AI+CG VT SL     +L  GG F P  CCSGV+ LN  ARTT DRQ AC C++   RA G+   +    AA LP  C VRI Y IS  T+C+ VR
Sbjct:   11 VIVCMLVTAPMASEAAISCGAVTGSLGQCYNYLTRGG-FIPRGCCSGVQRLNSLARTTRDRQQACRCIQGAARALGSR--LNAGRAARLPGACRVRISYPISARTNCNTVR 118          
BLAST of CB304781 vs. ExPASy Swiss-Prot
Match: NLTP1_HORVU (Non-specific lipid-transfer protein 1 OS=Hordeum vulgare GN=LTP1 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.576e-18
Identity = 46/110 (41.82%), Postives = 66/110 (60.00%), Query Frame = -2
Query:  224 LVCALLLCILVTAP-VTNAITCGQVTASLAPRIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTNRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 550
            L+ A L+ +L  AP    A+ CGQV + + P + +++ GG  P   CC+GVR L+  A+++ DRQ  CNCLK        +  N AA +PS+C V +PY ISP  DCSR+
Sbjct:    8 LMAAALVLMLTAAPRAAVALNCGQVDSKMKPCLTYVQ-GGPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHNLNLNNAASIPSKCNVNVPYTISPDIDCSRI 116          
BLAST of CB304781 vs. ExPASy Swiss-Prot
Match: NLTP1_HELAN (Non-specific lipid-transfer protein AP10 OS=Helianthus annuus PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 2.848e-17
Identity = 40/108 (37.04%), Postives = 66/108 (61.11%), Query Frame = -2
Query:  224 VCALLLCILVTAPVTNAITCGQVTASLAPRIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTNRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 547
            + A+++   +    + AITC  VT +L P +P+LR+GG+ P P CC+G + L GA RT  DR+ AC C K A      ++P++A+ LP +CG+     I+P+ +C+ +
Sbjct:   10 ILAMIVMAQLMVHPSVAITCNDVTGNLTPCLPYLRSGGK-PTPACCAGAKKLLGATRTQADRRTACKCAKTA-APQLKVRPDMASSLPGKCGISTSIPINPNVNCNTI 115          
BLAST of CB304781 vs. ExPASy Swiss-Prot
Match: NLTP7_ARATH (Non-specific lipid-transfer protein 7 OS=Arabidopsis thaliana GN=LTP7 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.082e-16
Identity = 45/113 (39.82%), Postives = 68/113 (60.18%), Query Frame = -2
Query:  230 LVCALLLCILVTAPVTN--AITCGQVTASLAPRIPFLRTGG-RFPPPPCCSGVRSLNGAARTTPDRQAACNCLKR-AYGTNRGIKPNVAAGLPSQCGVRIPY--KISPSTDCS 550
            L C + + ++   P+T   A++CG+V ++L P   +L  GG   P P CC+GVR LNG   TT DR+ AC C+K  A     G+  + AAG+P +CG++IPY  +I  +T C+
Sbjct:    7 LGCLVFVFVIAAGPITAKAALSCGEVNSNLKPCTGYLTNGGITSPGPQCCNGVRKLNGMVLTTLDRRQACRCIKNAARNVGPGLNADRAAGIPRRCGIKIPYSTQIRFNTKCN 119          
BLAST of CB304781 vs. ExPASy Swiss-Prot
Match: NLTPB_ARATH (Non-specific lipid-transfer protein 11 OS=Arabidopsis thaliana GN=LTP11 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.113e-16
Identity = 46/108 (42.59%), Postives = 59/108 (54.63%), Query Frame = -2
Query:  224 LLLCILVTAPVT---NAITCGQVTASLAPRIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTNRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 538
            LLL I +   +     AI C QV   LA  +P+L+ GG  P P CC+G+ SL  AA    DRQ ACNCLK    T  GI  + A  LP++CGV I    S + DC+ +
Sbjct:   12 LLLVITILLGIAYHGEAIACPQVNMYLAQCLPYLKAGGN-PSPMCCNGLNSLKAAAPEKADRQVACNCLKSVANTIPGINDDFAKQLPAKCGVNIGVPFSKTVDCNSI 118          
The following BLAST results are available for this feature:
BLAST of CB304781 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
NLTP_AMACA3.974e-1947.87Non-specific lipid-transfer protein OS=Amaranthus ... [more]
NLTP1_AMAHP3.974e-1947.87Non-specific lipid-transfer protein 1 OS=Amaranthu... [more]
NLTP3_VITSX8.854e-1949.45Non-specific lipid-transfer protein P3 OS=Vitis sp... [more]
NLTP3_ORYSJ1.510e-1839.62Non-specific lipid-transfer protein 3 OS=Oryza sat... [more]
NLTP3_ORYSI1.510e-1839.62Non-specific lipid-transfer protein 3 OS=Oryza sat... [more]
NLTP5_ARATH2.576e-1848.65Non-specific lipid-transfer protein 5 OS=Arabidops... [more]
NLTP1_HORVU2.576e-1841.82Non-specific lipid-transfer protein 1 OS=Hordeum v... [more]
NLTP1_HELAN2.848e-1737.04Non-specific lipid-transfer protein AP10 OS=Helian... [more]
NLTP7_ARATH1.082e-1639.82Non-specific lipid-transfer protein 7 OS=Arabidops... [more]
NLTPB_ARATH4.113e-1642.59Non-specific lipid-transfer protein 11 OS=Arabidop... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_G10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_G10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304781 ID=CB304781; Name=CB304781; organism=Citrus sinensis; type=EST; length=551bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGACTCAAAACACAGATCGCG
TTTACATATTTAATATGACATAAAAAGCAAATATACAAACATGACATGAG
AGTGAAACTCATACAAGTGGAGACTCGTTCGGACAAAGAAATTAACATAG
ATATTCTTTATTTATTTATTCTTCTCAGTCAATCATACTTGGAAAGTCAC
AGAGCTCAAACTCAACTTCACCTGACCCTAGAGCAGTCGGTGCTGGGGCT
GATCTTGTAAGGAATTCTGACTCCACATTGACTAGGAAGGCCAGCGGCAA
CATTAGGTTTGATGCCGCGGTTTGTTCCGTAAGCTCGTTTCAAGCAGTTG
CATGCAGCTTGGCGGTCAGGGGTGGTTCTGGCGGCGCCGTTGAGAGACCT
GACGCCGCTACAGCATGGCGGTGGAGGAAAACGCCCTCCAGTTCTCAAGA
AAGGGATGCGTGGAGCCAAGGAGGCTGTCACCTGCCCGCATGTTATGGCA
TTAGTCACCGGGGCAGTCACCAGAATGCACAAAAGCAAAGCACAAACAAG
C
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