CB304784

Overview
NameCB304784
Unique NameCB304784
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length610
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304784 vs. ExPASy Swiss-Prot
Match: GSHR_DEBHA (Glutathione reductase OS=Debaryomyces hansenii GN=GLR1 PE=3 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 1.436e-18
Identity = 48/119 (40.34%), Postives = 73/119 (61.34%), Query Frame = -3
Query:  258 DYSAVPSAVFSQPPIGQVGLSEEQAIQEYGD--IDVFTANFRPLKATL---SGLPDRIFMKLVLCAKTNKVLGLPMCGEDAPEIVQGFAVAVKAGLTKADFDAPVGVHPTAAEEFVPLR 599
            DYS VPS +FS P  G +GLS ++A ++YG+  I ++ + F  +   +     L      K+V   +  KV+GL + G+ + EI+QGF VA+K G TK DFD+ V +HPT+AEE V ++
Sbjct:  372 DYSNVPSVIFSHPEAGSIGLSCKEAKEKYGEDQIKIYKSKFNAMYYAMMEDDSLKSPTSYKVVCAGEDEKVVGLHIVGDSSAEILQGFGVAIKMGATKKDFDSCVAIHPTSAEELVTMK 490          
BLAST of CB304784 vs. ExPASy Swiss-Prot
Match: TYTR_TRYBB (Trypanothione reductase OS=Trypanosoma brucei brucei GN=TPR PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.875e-18
Identity = 50/120 (41.67%), Postives = 73/120 (60.83%), Query Frame = -3
Query:  249 KPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGLPDRIFM-KLVLCAKTNKVLGLPMCGEDAPEIVQGFAVAVKAGLTKADFDAPVGVHPTAAEEFVPLRTPT 605
            K D++ V SAVFS PPIG  GL EE A +E+  + V+ ++F PL   +SG   + F+ K+V       VLG+ + G+ APEI+Q   V ++     +DF   +GVHPT+AEE   +RTP+
Sbjct:  356 KTDHTRVASAVFSIPPIGTCGLIEEVAAKEFEKVAVYMSSFTPLMHNISGSKYKKFVAKIVTNHSDGTVLGVHLLGDGAPEIIQAVGVCLRLNAKISDFYNTIGVHPTSAEELCSMRTPS 475          
BLAST of CB304784 vs. ExPASy Swiss-Prot
Match: TYTR_CRIFA (Trypanothione reductase OS=Crithidia fasciculata GN=TPR PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.875e-18
Identity = 48/117 (41.03%), Postives = 72/117 (61.54%), Query Frame = -3
Query:  252 DYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGLPDRIFM-KLVLCAKTNKVLGLPMCGEDAPEIVQGFAVAVKAGLTKADFDAPVGVHPTAAEEFVPLRTP 599
            D++ V  AVFS PP+G  G  EE A ++Y  + V+ ++F PL   +SG   + FM ++V      +VLG+ M G+ +PEI+Q  A+ +K G   +DF   +GVHPT+AEE   +RTP
Sbjct:  358 DHTKVACAVFSIPPMGVCGYVEEDAAKKYDQVAVYESSFTPLMHNISGSTYKKFMVRIVTNHADGEVLGVHMLGDSSPEIIQSVAICLKMGAKISDFYNTIGVHPTSAEELCSMRTP 474          
BLAST of CB304784 vs. ExPASy Swiss-Prot
Match: GSHR_NEUCR (Glutathione reductase OS=Neurospora crassa GN=glr-1 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.124e-18
Identity = 49/120 (40.83%), Postives = 73/120 (60.83%), Query Frame = -3
Query:  258 KPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYG--DIDVFTANFRPLKATLSGLPDRI--FMKLVLCAKTNKVLGLPMCGEDAPEIVQGFAVAVKAGLTKADFDAPVGVHPTAAEEFVPLR 605
            K +Y  VPS VF+ P IG +GL+E +A+ +YG  ++ ++ ++F  +   +    D+     KL+      KV+GL + G  + EI+QGF VAV  G TKADFD  V +HPT+AEE V L+
Sbjct:  349 KLNYDNVPSVVFAHPEIGSIGLTEPEAVAKYGAENLKIYKSSFTAMYYAMMKPEDKAPTAYKLICAGPEEKVVGLHIIGLGSGEILQGFGVAVNMGATKADFDNCVAIHPTSAEELVTLK 468          
BLAST of CB304784 vs. ExPASy Swiss-Prot
Match: TYTR_TRYCO (Trypanothione reductase OS=Trypanosoma congolense GN=TPR PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.215e-17
Identity = 48/130 (36.92%), Postives = 75/130 (57.69%), Query Frame = -3
Query:  219 KPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGDIDVFTANFRPLKATLSGLPDRIFM-KLVLCAKTNKVLGLPMCGEDAPEIVQGFAVAVKAGLTKADFDAPVGVHPTAAEEFVPLRTPTRKIRKSPPSE 605
            K D++ V SAVFS PPIG  GL+EE+A + +  + V+ + F PL   +SG   + F+ K++       V+G+ + G+ +PEI+Q   + +K     +DF   +GVHPT+AEE   +RTP+    K    E
Sbjct:  356 KTDHTRVASAVFSIPPIGTCGLTEEEAAKSFEKVAVYLSCFTPLMHNISGSKYKKFVAKIITDHGDGTVVGVHLLGDSSPEIIQAVGICMKLNAKISDFYNTIGVHPTSAEELCSMRTPSHYYIKGEKME 485          
BLAST of CB304784 vs. ExPASy Swiss-Prot
Match: TRXR1_PONAB (Thioredoxin reductase 1, cytoplasmic OS=Pongo abelii GN=TXNRD1 PE=2 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 4.618e-17
Identity = 48/124 (38.71%), Postives = 75/124 (60.48%), Query Frame = -3
Query:  246 KPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGD--IDVFTANFRPLKATLSGLPD-RIFMKLVLCAKTN-KVLGLPMCGEDAPEIVQGFAVAVKAGLTKADFDAPVGVHPTAAEEFVPLRTPTR 605
            K DY  VP+ VF+    G  GLSEE+A++++G+  I+V+ + F PL+ T+    + + + K++   K N +V+G  + G +A E+ QGFA A+K GLTK   D+ +G+HP  AE F  L    R
Sbjct:  364 KCDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVYHSYFWPLEWTIPSRDNNKCYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAEVFTTLSVTKR 487          
BLAST of CB304784 vs. ExPASy Swiss-Prot
Match: TRXR1_PIG (Thioredoxin reductase 1, cytoplasmic OS=Sus scrofa GN=TXNRD1 PE=2 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 4.618e-17
Identity = 48/124 (38.71%), Postives = 75/124 (60.48%), Query Frame = -3
Query:  246 KPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGD--IDVFTANFRPLKATLSGLPD-RIFMKLVLCAKTN-KVLGLPMCGEDAPEIVQGFAVAVKAGLTKADFDAPVGVHPTAAEEFVPLRTPTR 605
            K DY  VP+ VF+    G  GLSEE+A++++G+  I+V+ + F PL+ T+    + + + K++   K N +V+G  + G +A E+ QGFA A+K GLTK   D+ +G+HP  AE F  L    R
Sbjct:  364 KCDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVYHSYFWPLEWTIPSRDNNKCYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAEVFTTLSVTKR 487          
BLAST of CB304784 vs. ExPASy Swiss-Prot
Match: TRXR1_HUMAN (Thioredoxin reductase 1, cytoplasmic OS=Homo sapiens GN=TXNRD1 PE=1 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 4.618e-17
Identity = 48/124 (38.71%), Postives = 75/124 (60.48%), Query Frame = -3
Query:  246 KPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGD--IDVFTANFRPLKATLSGLPD-RIFMKLVLCAKTN-KVLGLPMCGEDAPEIVQGFAVAVKAGLTKADFDAPVGVHPTAAEEFVPLRTPTR 605
            K DY  VP+ VF+    G  GLSEE+A++++G+  I+V+ + F PL+ T+    + + + K++   K N +V+G  + G +A E+ QGFA A+K GLTK   D+ +G+HP  AE F  L    R
Sbjct:  514 KCDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVYHSYFWPLEWTIPSRDNNKCYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAEVFTTLSVTKR 637          
BLAST of CB304784 vs. ExPASy Swiss-Prot
Match: TRXR1_BOVIN (Thioredoxin reductase 1, cytoplasmic OS=Bos taurus GN=TXNRD1 PE=2 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 7.877e-17
Identity = 48/124 (38.71%), Postives = 75/124 (60.48%), Query Frame = -3
Query:  246 KPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGD--IDVFTANFRPLKATLSGLPD-RIFMKLVLCAKTN-KVLGLPMCGEDAPEIVQGFAVAVKAGLTKADFDAPVGVHPTAAEEFVPLRTPTR 605
            K DY  VP+ VF+    G  GLSEE+A++++G+  ++V+ + F PL+ T+    + + + K+V   K N +V+G  + G +A E+ QGFA A+K GLTK   D+ +G+HP  AE F  L    R
Sbjct:  364 KCDYENVPTTVFTPLEYGSCGLSEEKAVEKFGEENVEVYHSYFWPLEWTIPSRDNNKCYAKVVCNIKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKDQLDSTIGIHPVCAEVFTTLSVTKR 487          
BLAST of CB304784 vs. ExPASy Swiss-Prot
Match: TRXR2_HUMAN (Thioredoxin reductase 2, mitochondrial OS=Homo sapiens GN=TXNRD2 PE=1 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 2.993e-16
Identity = 48/122 (39.34%), Postives = 75/122 (61.48%), Query Frame = -3
Query:  246 DYSAVPSAVFSQPPIGQVGLSEEQAIQEYGD--IDVFTANFRPLKATLSGLP-DRIFMKLVLCAKTNK-VLGLPMCGEDAPEIVQGFAVAVKAGLTKADFDAPVGVHPTAAEEFVPLRTPTR 599
            DY  VP+ VF+    G VGLSEE+A+  +G   ++V+ A+++PL+ T++G    + ++K+V   +  + VLGL   G +A E+ QGFA+ +K G + A     VG+HPT +EE V LR   R
Sbjct:  391 DYDNVPTTVFTPLEYGCVGLSEEEAVARHGQEHVEVYHAHYKPLEFTVAGRDASQCYVKMVCLREPPQLVLGLHFLGPNAGEVTQGFALGIKCGASYAQVMRTVGIHPTCSEEVVKLRISKR 512          
The following BLAST results are available for this feature:
BLAST of CB304784 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
GSHR_DEBHA1.436e-1840.34Glutathione reductase OS=Debaryomyces hansenii GN=... [more]
TYTR_TRYBB1.875e-1841.67Trypanothione reductase OS=Trypanosoma brucei bruc... [more]
TYTR_CRIFA1.875e-1841.03Trypanothione reductase OS=Crithidia fasciculata G... [more]
GSHR_NEUCR7.124e-1840.83Glutathione reductase OS=Neurospora crassa GN=glr-... [more]
TYTR_TRYCO1.215e-1736.92Trypanothione reductase OS=Trypanosoma congolense ... [more]
TRXR1_PONAB4.618e-1738.71Thioredoxin reductase 1, cytoplasmic OS=Pongo abel... [more]
TRXR1_PIG4.618e-1738.71Thioredoxin reductase 1, cytoplasmic OS=Sus scrofa... [more]
TRXR1_HUMAN4.618e-1738.71Thioredoxin reductase 1, cytoplasmic OS=Homo sapie... [more]
TRXR1_BOVIN7.877e-1738.71Thioredoxin reductase 1, cytoplasmic OS=Bos taurus... [more]
TRXR2_HUMAN2.993e-1639.34Thioredoxin reductase 2, mitochondrial OS=Homo sap... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_H01 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_H01 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304784 ID=CB304784; Name=CB304784; organism=Citrus sinensis; type=EST; length=610bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGTCCACCTTGAAGGGTAT
ATAACAGAGAAATAACAGTAAATCTAAATGAACATATCCTTAATCCTACT
CAGCAAGAAATACTGACACCTACTCGCCTTGAAATTGCCTTCTAAAACAT
GCAGCAAATTGATTGCTTCTACTCTACTAAACTCCTGCTGCAGCCTTAAC
CTCAGGACCAGTCATTCCCTCAGACGGAGGGCTCTTTCTGATCTTCCGAG
TAGGCGTCCTCAATGGGACAAACTCCTCTGCTGCCGTTGGATGAACACCC
ACTGGGGCATCAAAGTCTGCCTTAGTCAGACCAGCTTTGACAGCAACAGC
AAATCCCTGCACAATTTCAGGGGCATCTTCTCCACACATGGGCAAACCCA
GAACTTTGTTCGTCTTTGCACATAATACAAGTTTCATGAAGATCCTGTCT
GGAAGCCCAGAGAGAGTAGCTTTTAGTGGTCTGAAATTTGCTGTGAAGAC
ATCAATGTCACCATATTCTTGTATAGCCTGTTCTTCAGAAAGACCAACTT
GTCCAATTGGTGGCTGAGAAAAGACTGCAGATGGAACAGCGCTGTAATCA
GGTTTTGTTG
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