CB304784

Overview
NameCB304784
Unique NameCB304784
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length610
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304784 vs. ExPASy Swiss-Prot
Match: TRXR1_MOUSE (Thioredoxin reductase 1, cytoplasmic OS=Mus musculus GN=Txnrd1 PE=1 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 8.709e-16
Identity = 46/124 (37.10%), Postives = 71/124 (57.26%), Query Frame = -3
Query:  246 KPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGD--IDVFTANFRPLKATLSGLPDRIFMKLVLC--AKTNKVLGLPMCGEDAPEIVQGFAVAVKAGLTKADFDAPVGVHPTAAEEFVPLRTPTR 605
            K DY  VP+ VF+    G  GLSEE+A++++G+  I+V+ + F PL+ T+    +      ++C      +V+G  + G +A E+ QGFA A+K GLTK   D+ +G+HP  AE F  L    R
Sbjct:  478 KCDYDNVPTTVFTPLEYGCCGLSEEKAVEKFGEENIEVYHSFFWPLEWTVPSRDNNKCYAKIICNLKDDERVVGFHVLGPNAGEVTQGFAAALKCGLTKQQLDSTIGIHPVCAEIFTTLSVTKR 601          
BLAST of CB304784 vs. ExPASy Swiss-Prot
Match: TRXR3_MOUSE (Thioredoxin reductase 3 (Fragment) OS=Mus musculus GN=Txnrd3 PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.486e-15
Identity = 47/119 (39.50%), Postives = 69/119 (57.98%), Query Frame = -3
Query:  261 KPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYG--DIDVFTANFRPLKATLSGLPDRIFMKLVLCAK--TNKVLGLPMCGEDAPEIVQGFAVAVKAGLTKADFDAPVGVHPTAAEEFVPL 605
            K DY  +P+ VF+    G  GLSEE+AI+ Y   +++V+   F PL+ T++G  +      ++C K    +V+G  + G +A EI QGFA A+K GLTK   D  +G+HPT  E F  L
Sbjct:  562 KCDYINIPTTVFTPLEYGCCGLSEEKAIEMYKKENLEVYHTLFWPLEWTVAGRDNNTCYAKIICNKFDNERVVGFHLLGPNAGEITQGFAAAMKCGLTKQLLDDTIGIHPTCGEVFTTL 680          
BLAST of CB304784 vs. ExPASy Swiss-Prot
Match: TRXR3_HUMAN (Thioredoxin reductase 3 OS=Homo sapiens GN=TXNRD3 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 2.534e-15
Identity = 46/119 (38.66%), Postives = 70/119 (58.82%), Query Frame = -3
Query:  261 KPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYG--DIDVFTANFRPLKATLSGLPDRIFMKLVLCAKTN--KVLGLPMCGEDAPEIVQGFAVAVKAGLTKADFDAPVGVHPTAAEEFVPL 605
            K DY  VP+ VF+    G  GLSEE+AI+ Y   +++++   F PL+ T++G  +      ++C K +  +V+G  + G +A E+ QGFA A+K GLTK   D  +G+HPT  E F  L
Sbjct:  619 KCDYINVPTTVFTPLEYGCCGLSEEKAIEVYKKENLEIYHTLFWPLEWTVAGRENNTCYAKIICNKFDHDRVIGFHILGPNAGEVTQGFAAAMKCGLTKQLLDDTIGIHPTCGEVFTTL 737          
BLAST of CB304784 vs. ExPASy Swiss-Prot
Match: GSHR_CAEEL (Probable glutathione reductase 2 OS=Caenorhabditis elegans GN=trxr-2 PE=2 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 3.309e-15
Identity = 45/135 (33.33%), Postives = 81/135 (60.00%), Query Frame = -3
Query:  207 YSAVPSAVFSQPPIGQVGLSEEQAIQEYGD--IDVFTANFRPLKATLSGLPDRIFMKL-VLCAK--TNKVLGLPMCGEDAPEIVQGFAVAVKAGLTKADFDAPVGVHPTAAEEFVPLRTPTRKIRKSPPSEGMTG 596
            +  V + VF+   +  VGL+EE+AIQ++G+  I+VF ++F P +  +    D  F  +  +C +  + K+LGL   G +A E++QG+AVA + G++ +D    + +HP ++EEFV L   T++  + P ++G  G
Sbjct:  370 FDGVATTVFTPLELSTVGLTEEEAIQKHGEDSIEVFHSHFTPFEYVVPQNKDSGFCYVKAVCTRDESQKILGLHFVGPNAAEVIQGYAVAFRVGISMSDLQNTIAIHPCSSEEFVKLHI-TKRSGQDPRTQGCCG 503          
BLAST of CB304784 vs. ExPASy Swiss-Prot
Match: TRXR2_BOVIN (Thioredoxin reductase 2, mitochondrial OS=Bos taurus GN=TXNRD2 PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 4.322e-15
Identity = 47/122 (38.52%), Postives = 73/122 (59.84%), Query Frame = -3
Query:  246 DYSAVPSAVFSQPPIGQVGLSEEQAIQEYGD--IDVFTANFRPLKATLSGLP-DRIFMKLVLCAKTNK-VLGLPMCGEDAPEIVQGFAVAVKAGLTKADFDAPVGVHPTAAEEFVPLRTPTR 599
            DYS+VP+ VF+    G VGLSEE A+  +G+  ++V+ A ++PL+ T+      + ++K+V   +  + VLGL   G +A E++QGFA+ +K G +       VG+HPT AEE   LR   R
Sbjct:  378 DYSSVPTTVFTPLEYGCVGLSEEAAVARHGEEHVEVYHAFYKPLEFTVPQRDASQCYIKMVCLREPPQLVLGLHFLGPNAGEVIQGFALGIKCGASYQQLMRTVGIHPTCAEEVAKLRISKR 499          
BLAST of CB304784 vs. ExPASy Swiss-Prot
Match: TRXR1_CAEEL (Thioredoxin reductase 1 OS=Caenorhabditis elegans GN=trxr-1 PE=2 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 7.373e-15
Identity = 47/136 (34.56%), Postives = 76/136 (55.88%), Query Frame = -3
Query:  207 DYSAVPSAVFSQPPIGQVGLSEEQAIQEYG--DIDVFTANFRPLKATLSGLPDR--IFMKLV-LCAKTNKVLGLPMCGEDAPEIVQGFAVAVKAGLTKADFDAPVGVHPTAAEEFVPLRTPTRKIRKSPPSEGMTG 599
            +Y  +P+ VF+    G  GLSEE A+ +YG  +I ++   F PL+ T+S   D+   ++K++ L  +  KV+G  +   +A E+ QGF +A+K    KADFD  +G+HPT AE F  L    ++  +   + G  G
Sbjct:  532 EYDQIPTTVFTPLEYGCCGLSEEDAMMKYGKDNIIIYHNVFNPLEYTISERMDKDHCYLKMICLRNEEEKVVGFHILTPNAGEVTQGFGIALKLAAKKADFDRLIGIHPTVAENFTTLTLEKKEGDEELQASGCUG 667          
BLAST of CB304784 vs. ExPASy Swiss-Prot
Match: TRXR2_MOUSE (Thioredoxin reductase 2, mitochondrial OS=Mus musculus GN=Txnrd2 PE=1 SV=4)

HSP 1 Score: 80.1073 bits (196), Expect = 9.629e-15
Identity = 48/125 (38.40%), Postives = 74/125 (59.20%), Query Frame = -3
Query:  246 TKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGD--IDVFTANFRPLKATLSGLP-DRIFMKLVLCAKTNK-VLGLPMCGEDAPEIVQGFAVAVKAGLTKADFDAPVGVHPTAAEEFVPLRTPTR 608
            T  DYS VP+ VF+    G VGLSEE+A+  +G   ++V+ A ++PL+ T++     + ++K+V   +  + VLGL   G +A E+ QGFA+ +K G + A     VG+HPT +EE V L    R
Sbjct:  388 TLMDYSNVPTTVFTPLEYGCVGLSEEEAVALHGQEHVEVYHAYYKPLEFTVADRDASQCYIKMVCMREPPQLVLGLHFLGPNAGEVTQGFALGIKCGASYAQVMQTVGIHPTCSEEVVKLHISKR 512          
BLAST of CB304784 vs. ExPASy Swiss-Prot
Match: TRXR1_RAT (Thioredoxin reductase 1, cytoplasmic OS=Rattus norvegicus GN=Txnrd1 PE=1 SV=4)

HSP 1 Score: 80.1073 bits (196), Expect = 9.629e-15
Identity = 49/124 (39.52%), Postives = 75/124 (60.48%), Query Frame = -3
Query:  246 KPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGD--IDVFTANFRPLKATL-SGLPDRIFMKLVLCAKTN-KVLGLPMCGEDAPEIVQGFAVAVKAGLTKADFDAPVGVHPTAAEEFVPLRTPTR 605
            K DY  VP+ VF+    G  GLSEE+A++++G+  I+V+ + F PL+ T+ S   ++ + K++   K N +V+G  + G +A E+ QGFA A K GLTK   D+ +G+HP  AE F  L    R
Sbjct:  364 KCDYDNVPTTVFTPLEYGCCGLSEEKAVEKFGEENIEVYHSFFWPLEWTVPSRDNNKCYAKVICNLKDNERVVGFHVLGPNAGEVTQGFA-AAKCGLTKQQLDSTIGIHPVCAEIFTTLSVTKR 486          
BLAST of CB304784 vs. ExPASy Swiss-Prot
Match: TRXR2_RAT (Thioredoxin reductase 2, mitochondrial OS=Rattus norvegicus GN=Txnrd2 PE=1 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 8.151e-14
Identity = 47/125 (37.60%), Postives = 74/125 (59.20%), Query Frame = -3
Query:  246 TKPDYSAVPSAVFSQPPIGQVGLSEEQAIQEYGD--IDVFTANFRPLKATLSGLP-DRIFMKLVLCAKTNK-VLGLPMCGEDAPEIVQGFAVAVKAGLTKADFDAPVGVHPTAAEEFVPLRTPTR 608
            T  +YS VP+ VF+    G VGLSEE+A+  +G   I+V+ A ++PL+ T++     + ++K+V   +  + VLGL   G +A E+ QGFA+ ++ G + A     VG+HPT +EE V L    R
Sbjct:  390 TLMNYSNVPTTVFTPLEYGCVGLSEEEAVALHGQEHIEVYHAYYKPLEFTVADRDASQCYIKMVCMREPPQLVLGLHFLGPNAGEVTQGFALGIQCGASYAQVMQTVGIHPTCSEEVVKLHISKR 514          
BLAST of CB304784 vs. ExPASy Swiss-Prot
Match: TRXR2_DROME (Thioredoxin reductase 2, mitochondrial OS=Drosophila melanogaster GN=Trxr-2 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.425e-12
Identity = 49/130 (37.69%), Postives = 69/130 (53.08%), Query Frame = -3
Query:  222 DYSAVPSAVFSQPPIGQVGLSEEQAIQEYG--DIDVFTANFRPLKATLSGLPDR-IFMKLVL-CAKTNKVLGLPMCGEDAPEIVQGFAVAVKAGLTKADFDAPVGVHPTAAEEFVPLRTPTRKIRKSPPS 599
            DY+ V + VF+      VG+SEE AI+  G  +I+VF   ++P +  +     R  ++K V   +   K+LGL   G  A E++QGFA A+K GLT       VG+HPT AEEF  L    R  R   P+
Sbjct:  383 DYADVATTVFTPLEYSCVGMSEETAIELRGADNIEVFHGYYKPTEFFIPQKSVRHCYLKAVAEVSGDQKILGLHYIGPVAGEVIQGFAAALKTGLTVKTLLNTVGIHPTTAEEFTRLSITKRSGRDPTPA 512          
The following BLAST results are available for this feature:
BLAST of CB304784 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
TRXR1_MOUSE8.709e-1637.10Thioredoxin reductase 1, cytoplasmic OS=Mus muscul... [more]
TRXR3_MOUSE1.486e-1539.50Thioredoxin reductase 3 (Fragment) OS=Mus musculus... [more]
TRXR3_HUMAN2.534e-1538.66Thioredoxin reductase 3 OS=Homo sapiens GN=TXNRD3 ... [more]
GSHR_CAEEL3.309e-1533.33Probable glutathione reductase 2 OS=Caenorhabditis... [more]
TRXR2_BOVIN4.322e-1538.52Thioredoxin reductase 2, mitochondrial OS=Bos taur... [more]
TRXR1_CAEEL7.373e-1534.56Thioredoxin reductase 1 OS=Caenorhabditis elegans ... [more]
TRXR2_MOUSE9.629e-1538.40Thioredoxin reductase 2, mitochondrial OS=Mus musc... [more]
TRXR1_RAT9.629e-1539.52Thioredoxin reductase 1, cytoplasmic OS=Rattus nor... [more]
TRXR2_RAT8.151e-1437.60Thioredoxin reductase 2, mitochondrial OS=Rattus n... [more]
TRXR2_DROME3.425e-1237.69Thioredoxin reductase 2, mitochondrial OS=Drosophi... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_H01 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_H01 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304784 ID=CB304784; Name=CB304784; organism=Citrus sinensis; type=EST; length=610bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGTCCACCTTGAAGGGTAT
ATAACAGAGAAATAACAGTAAATCTAAATGAACATATCCTTAATCCTACT
CAGCAAGAAATACTGACACCTACTCGCCTTGAAATTGCCTTCTAAAACAT
GCAGCAAATTGATTGCTTCTACTCTACTAAACTCCTGCTGCAGCCTTAAC
CTCAGGACCAGTCATTCCCTCAGACGGAGGGCTCTTTCTGATCTTCCGAG
TAGGCGTCCTCAATGGGACAAACTCCTCTGCTGCCGTTGGATGAACACCC
ACTGGGGCATCAAAGTCTGCCTTAGTCAGACCAGCTTTGACAGCAACAGC
AAATCCCTGCACAATTTCAGGGGCATCTTCTCCACACATGGGCAAACCCA
GAACTTTGTTCGTCTTTGCACATAATACAAGTTTCATGAAGATCCTGTCT
GGAAGCCCAGAGAGAGTAGCTTTTAGTGGTCTGAAATTTGCTGTGAAGAC
ATCAATGTCACCATATTCTTGTATAGCCTGTTCTTCAGAAAGACCAACTT
GTCCAATTGGTGGCTGAGAAAAGACTGCAGATGGAACAGCGCTGTAATCA
GGTTTTGTTG
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