CB304784

Overview
NameCB304784
Unique NameCB304784
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length610
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304784 vs. ExPASy Swiss-Prot
Match: TRXR1_DROME (Thioredoxin reductase 1, mitochondrial OS=Drosophila melanogaster GN=Trxr-1 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.700e-11
Identity = 44/122 (36.07%), Postives = 64/122 (52.46%), Query Frame = -3
Query:  246 DYSAVPSAVFSQPPIGQVGLSEEQAIQEYG--DIDVFTANFRPLKATLSGLPDRIFMKLVLCAK--TNKVLGLPMCGEDAPEIVQGFAVAVKAGLTKADFDAPVGVHPTAAEEFVPLRTPTR 599
            DY  V + VF+      VGLSEE A++++G  +I+VF   ++P +  +     R      +  +    +V GL   G  A E++QGFA A+K+GLT       VG+HPT AEEF  L    R
Sbjct:  463 DYKDVATTVFTPLEYACVGLSEEDAVKQFGADEIEVFHGYYKPTEFFIPQKSVRYCYLKAVAERHGDQRVYGLHYIGPVAGEVIQGFAAALKSGLTINTLINTVGIHPTTAEEFTRLAITKR 584          
BLAST of CB304784 vs. ExPASy Swiss-Prot
Match: TRXR_PLAF5 (Thioredoxin reductase OS=Plasmodium falciparum (isolate FCH-5) GN=TR PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.459e-11
Identity = 44/132 (33.33%), Postives = 68/132 (51.52%), Query Frame = -3
Query:  261 DYSAVPSAVFSQPPIGQVGLSEEQAIQEYG--DIDVFTANFRPLKATLSGLPDRI---------------FMKLVLCAKT--NKVLGLPMCGEDAPEIVQGFAVAVKAGLTKADFDAPVGVHPTAAEEFVPL 599
            DYS +P+++++    G  G SEE+A + YG  +++VF   F  L+ +       I                 KLV C K   N+V+G    G +A E+ QG A+A++  + K DFD  +G+HPT AE F+ L
Sbjct:  389 DYSYIPTSIYTPIEYGACGYSEEKAYELYGKSNVEVFLQEFNNLEISAVHRQKHIRAQKDEYDLDVSSTCLAKLV-CLKNEDNRVIGFHYVGPNAGEVTQGMALALRLKVKKKDFDNCIGIHPTDAESFMNL 519          
BLAST of CB304784 vs. ExPASy Swiss-Prot
Match: TRXR2_PLAF7 (Thioredoxin reductase 2 OS=Plasmodium falciparum (isolate 3D7) GN=trxr2 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 6.459e-11
Identity = 44/132 (33.33%), Postives = 68/132 (51.52%), Query Frame = -3
Query:  261 DYSAVPSAVFSQPPIGQVGLSEEQAIQEYG--DIDVFTANFRPLKATLSGLPDRI---------------FMKLVLCAKT--NKVLGLPMCGEDAPEIVQGFAVAVKAGLTKADFDAPVGVHPTAAEEFVPL 599
            DYS +P+++++    G  G SEE+A + YG  +++VF   F  L+ +       I                 KLV C K   N+V+G    G +A E+ QG A+A++  + K DFD  +G+HPT AE F+ L
Sbjct:  465 DYSYIPTSIYTPIEYGACGYSEEKAYELYGKSNVEVFLQEFNNLEISAVHRQKHIRAQKDEYDLDVSSTCLAKLV-CLKNEDNRVIGFHYVGPNAGEVTQGMALALRLKVKKKDFDNCIGIHPTDAESFMNL 595          
The following BLAST results are available for this feature:
BLAST of CB304784 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
TRXR1_DROME1.700e-1136.07Thioredoxin reductase 1, mitochondrial OS=Drosophi... [more]
TRXR_PLAF56.459e-1133.33Thioredoxin reductase OS=Plasmodium falciparum (is... [more]
TRXR2_PLAF76.459e-1133.33Thioredoxin reductase 2 OS=Plasmodium falciparum (... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_H01 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_H01 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304784 ID=CB304784; Name=CB304784; organism=Citrus sinensis; type=EST; length=610bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGTCCACCTTGAAGGGTAT
ATAACAGAGAAATAACAGTAAATCTAAATGAACATATCCTTAATCCTACT
CAGCAAGAAATACTGACACCTACTCGCCTTGAAATTGCCTTCTAAAACAT
GCAGCAAATTGATTGCTTCTACTCTACTAAACTCCTGCTGCAGCCTTAAC
CTCAGGACCAGTCATTCCCTCAGACGGAGGGCTCTTTCTGATCTTCCGAG
TAGGCGTCCTCAATGGGACAAACTCCTCTGCTGCCGTTGGATGAACACCC
ACTGGGGCATCAAAGTCTGCCTTAGTCAGACCAGCTTTGACAGCAACAGC
AAATCCCTGCACAATTTCAGGGGCATCTTCTCCACACATGGGCAAACCCA
GAACTTTGTTCGTCTTTGCACATAATACAAGTTTCATGAAGATCCTGTCT
GGAAGCCCAGAGAGAGTAGCTTTTAGTGGTCTGAAATTTGCTGTGAAGAC
ATCAATGTCACCATATTCTTGTATAGCCTGTTCTTCAGAAAGACCAACTT
GTCCAATTGGTGGCTGAGAAAAGACTGCAGATGGAACAGCGCTGTAATCA
GGTTTTGTTG
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