CB304793

Overview
NameCB304793
Unique NameCB304793
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length585
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11598 contig Csv1_Contig11598:259..843. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: HSP71_DROSI (Major heat shock 70 kDa protein Ab OS=Drosophila simulans GN=Hsp70Ab PE=2 SV=2)

HSP 1 Score: 238.424 bits (607), Expect = 1.953e-62
Identity = 123/186 (66.13%), Postives = 142/186 (76.34%), Query Frame = -1
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TRIPKVQ LLQ+FF+GK L  S NPDE          AILSG+   K+QD+LL+DV P SLG+ETAGGVMT LI RN  IP K+ + FSTY DNQPGV IQVYEGER  T+DNN LG F+LSGIPPAPRGVPQI V FD+DANGILNVSA++ + G+   ITI NDKGRLS+ EI++MV EAE
Sbjct:  336 GGSTRIPKVQSLLQEFFHGKNLNLSINPDEAVAYGAAVQAAILSGDQTGKIQDVLLVDVAPLSLGIETAGGVMTKLIERNCRIPCKQTKTFSTYSDNQPGVSIQVYEGERAMTKDNNALGTFDLSGIPPAPRGVPQIEVTFDLDANGILNVSAKEMSTGKAKNITIKNDKGRLSQAEIDRMVNEAE 521          
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: GRP78_NEUCR (78 kDa glucose-regulated protein homolog OS=Neurospora crassa GN=grp78 PE=3 SV=3)

HSP 1 Score: 238.039 bits (606), Expect = 2.550e-62
Identity = 119/186 (63.98%), Postives = 143/186 (76.88%), Query Frame = -1
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TRIPKVQ L+++FFNGK+  K  NPDE           +LSGE  E  +D++L+DV P +LG+ET GGVMT LIPRNT IP +K Q+FST  DNQP VLIQVYEGER+ T+DNNLLGKFEL+GIPPAPRGVPQI V F++DANGIL VSA DK  G+   ITI NDKGRL+++EI++MV EAE
Sbjct:  372 GGSTRIPKVQALIEEFFNGKKASKGINPDEAVAFGAAVQAGVLSGE--EGTEDIVLMDVNPLTLGIETTGGVMTKLIPRNTPIPTRKSQIFSTAADNQPVVLIQVYEGERSMTKDNNLLGKFELTGIPPAPRGVPQIEVSFELDANGILKVSAHDKGTGKAESITITNDKGRLTQEEIDRMVAEAE 555          
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: BIP2_MAIZE (Luminal-binding protein 2 OS=Zea mays GN=BIPE2 PE=1 SV=3)

HSP 1 Score: 238.039 bits (606), Expect = 2.550e-62
Identity = 119/186 (63.98%), Postives = 144/186 (77.42%), Query Frame = -1
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TRIPKVQQLL+D+F+GKE  K  NPDE          +ILSGEG ++ +D+LLLDV P +LG+ET GGVMT LIPRNT IP KK QVF+TY D Q  V IQV+EGER+ T+D  LLGKF+L+GI PAPRG PQI V F++DANGILNV AEDK  G+  KITI N+KGRLS++EI++MV+EAE
Sbjct:  367 GGSTRIPKVQQLLRDYFDGKEPNKGVNPDEAVAFGAAVQGSILSGEGGDETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSMTKDCRLLGKFDLNGIAPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNEKGRLSQEEIDRMVREAE 552          
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: HSP70_AJECA (Heat shock 70 kDa protein OS=Ajellomyces capsulata GN=HSP70 PE=3 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 4.350e-62
Identity = 125/187 (66.84%), Postives = 146/187 (78.07%), Query Frame = -1
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEK-VQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TRIP++Q+L+ DFFNGKE  KS NPDE          AILSG+ + K   ++LLLDV P SLG+ETAGGVMT LI RNTTIP KK + FST+ DNQPGVLIQV+EGER RT+DNNLLGKFEL+GIP A RGVPQI V FD+DANGI+NVSA +K   + NKI I NDKGRLSK+EIE+M+ EAE
Sbjct:  337 GGSTRIPRIQKLVSDFFNGKEPNKSINPDEAVAYGAAVQAAILSGDTSSKSTNEILLLDVAPLSLGIETAGGVMTPLIKRNTTIPTKKSETFSTFSDNQPGVLIQVFEGERARTKDNNLLGKFELTGIPRA-RGVPQIEVTFDVDANGIMNVSALEKGTRKTNKIVITNDKGRLSKEEIERMLAEAE 522          
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: GRP78_YARLI (78 kDa glucose-regulated protein homolog OS=Yarrowia lipolytica GN=KAR2 PE=3 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 4.350e-62
Identity = 121/186 (65.05%), Postives = 142/186 (76.34%), Query Frame = -1
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TRIPKVQ+LL+ FF+GK+  K  NPDE           +LSGE  + V+D++LLDV P +LG+ET GGVMT LI RNT IP KK Q+FST  DNQ  VLIQV+EGERT ++DNNLLGKFEL GIPPAPRGVPQI V F++DANGIL V+A DK  G+   ITI NDKGRLSKDEIE+MV+EAE
Sbjct:  370 GGSTRIPKVQELLEKFFDGKKASKGINPDEAVAYGAAVQAGVLSGE--DGVEDIVLLDVNPLTLGIETTGGVMTKLINRNTNIPTKKSQIFSTAVDNQSTVLIQVFEGERTMSKDNNLLGKFELKGIPPAPRGVPQIEVTFELDANGILRVTAHDKGTGKSETITITNDKGRLSKDEIERMVEEAE 553          
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: HSP7B_DROME (Heat shock 70 kDa protein cognate 2 OS=Drosophila melanogaster GN=Hsc70-2 PE=1 SV=2)

HSP 1 Score: 236.884 bits (603), Expect = 5.682e-62
Identity = 118/186 (63.44%), Postives = 145/186 (77.96%), Query Frame = -1
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TRIPK+Q+LLQD F GK+L  S NPDE          AIL+G G+ ++QDLLL+DV P SLG+ETAGGVMT L+ RN  IP K++Q+F+TY DNQ  V IQVYEGER  T+DNNLLG F L+GIPPAPRGVPQI V FD++A+GILNV+A+D + G+  KITI+NDKGRLSK EI++M+ EAE
Sbjct:  339 GGSTRIPKIQKLLQDLFGGKQLNLSINPDEAVAYGAAVQAAILTGVGSSQIQDLLLVDVAPLSLGIETAGGVMTNLVERNARIPCKQQQIFTTYSDNQNAVTIQVYEGERAMTKDNNLLGTFNLTGIPPAPRGVPQIEVAFDLNADGILNVNAKDNSTGKSEKITISNDKGRLSKAEIDRMLSEAE 524          
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: GRP78_ASPNG (78 kDa glucose-regulated protein homolog OS=Aspergillus niger GN=bipA PE=2 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.266e-61
Identity = 120/186 (64.52%), Postives = 140/186 (75.27%), Query Frame = -1
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TRIPKVQ LL++FF GK+  K  NPDE           +LSGE  E   D++L+DV P +LG+ET GGVMT LIPRNT IP +K Q+FST  DNQP VLIQVYEGER+ T+DNNLLGKFEL+GIPPAPRGVPQI V FD+DANGIL V A DK  G+   ITI NDKGRLS++EI++MV EAE
Sbjct:  382 GGSTRIPKVQALLEEFFGGKKASKGINPDEAVAFGAAVQGGVLSGE--EGTGDVVLMDVNPLTLGIETTGGVMTKLIPRNTVIPTRKSQIFSTAADNQPTVLIQVYEGERSLTKDNNLLGKFELTGIPPAPRGVPQIEVSFDLDANGILKVHASDKGTGKAESITITNDKGRLSQEEIDRMVAEAE 565          
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: GRP78_ASPKA (78 kDa glucose-regulated protein homolog OS=Aspergillus kawachi GN=bipA PE=3 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.266e-61
Identity = 120/186 (64.52%), Postives = 140/186 (75.27%), Query Frame = -1
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TRIPKVQ LL++FF GK+  K  NPDE           +LSGE  E   D++L+DV P +LG+ET GGVMT LIPRNT IP +K Q+FST  DNQP VLIQVYEGER+ T+DNNLLGKFEL+GIPPAPRGVPQI V FD+DANGIL V A DK  G+   ITI NDKGRLS++EI++MV EAE
Sbjct:  382 GGSTRIPKVQALLEEFFGGKKASKGINPDEAVAFGAAVQGGVLSGE--EGTGDVVLMDVNPLTLGIETTGGVMTKLIPRNTVIPTRKSQIFSTAADNQPTVLIQVYEGERSLTKDNNLLGKFELTGIPPAPRGVPQIEVSFDLDANGILKVHASDKGTGKAESITITNDKGRLSQEEIDRMVAEAE 565          
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: GRP78_ASPAW (78 kDa glucose-regulated protein homolog OS=Aspergillus awamori GN=bipA PE=2 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.266e-61
Identity = 120/186 (64.52%), Postives = 140/186 (75.27%), Query Frame = -1
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TRIPKVQ LL++FF GK+  K  NPDE           +LSGE  E   D++L+DV P +LG+ET GGVMT LIPRNT IP +K Q+FST  DNQP VLIQVYEGER+ T+DNNLLGKFEL+GIPPAPRGVPQI V FD+DANGIL V A DK  G+   ITI NDKGRLS++EI++MV EAE
Sbjct:  382 GGSTRIPKVQALLEEFFGGKKASKGINPDEAVAFGAAVQGGVLSGE--EGTGDVVLMDVNPLTLGIETTGGVMTKLIPRNTVIPTRKSQIFSTAADNQPTVLIQVYEGERSLTKDNNLLGKFELTGIPPAPRGVPQIEVSFDLDANGILKVHASDKGTGKAESITITNDKGRLSQEEIDRMVAEAE 565          
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: BIP8_TOBAC (Luminal-binding protein 8 (Fragment) OS=Nicotiana tabacum GN=BIP8 PE=2 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.266e-61
Identity = 118/182 (64.84%), Postives = 140/182 (76.92%), Query Frame = -1
Query:   28 RIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 573
            RIPKVQQLL+D+F+GKE  K  NPDE           ILSGEG ++ +D+LLLDV P +LG+ET GGVMT LIPRNT IP KK QVF+TY D Q  V IQV+EGER+ T+D  LLGKF+L+GI PAPRG PQI V F++DANGILNV AEDK  G+  KITI NDKGRLS++EIE+MV+EAE
Sbjct:    1 RIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPSKKSQVFTTYQDQQTTVTIQVFEGERSLTKDCRLLGKFDLTGIAPAPRGTPQIEVTFEVDANGILNVKAEDKASGKSEKITITNDKGRLSQEEIERMVKEAE 182          
The following BLAST results are available for this feature:
BLAST of CB304793 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HSP71_DROSI1.953e-6266.13Major heat shock 70 kDa protein Ab OS=Drosophila s... [more]
GRP78_NEUCR2.550e-6263.9878 kDa glucose-regulated protein homolog OS=Neuros... [more]
BIP2_MAIZE2.550e-6263.98Luminal-binding protein 2 OS=Zea mays GN=BIPE2 PE=... [more]
HSP70_AJECA4.350e-6266.84Heat shock 70 kDa protein OS=Ajellomyces capsulata... [more]
GRP78_YARLI4.350e-6265.0578 kDa glucose-regulated protein homolog OS=Yarrow... [more]
HSP7B_DROME5.682e-6263.44Heat shock 70 kDa protein cognate 2 OS=Drosophila ... [more]
GRP78_ASPNG1.266e-6164.5278 kDa glucose-regulated protein homolog OS=Asperg... [more]
GRP78_ASPKA1.266e-6164.5278 kDa glucose-regulated protein homolog OS=Asperg... [more]
GRP78_ASPAW1.266e-6164.5278 kDa glucose-regulated protein homolog OS=Asperg... [more]
BIP8_TOBAC1.266e-6164.84Luminal-binding protein 8 (Fragment) OS=Nicotiana ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IVaR_A03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_A03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304793 ID=CB304793; Name=CB304793; organism=Citrus sinensis; type=EST; length=585bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCGCCTCTTGAACCATCTTCT
CAATTTCATCCTTTGAAAGTCTTCCTTTGTCATTAGCGATGGTGATCTTG
TTCTTTTGACCAGGGGTCTTGTCCTCGGCAGACACATTCAGGATACCATT
GGCATCGATGTCGAAGCACACAGTGATTTGAGGAACACCCCTAGGAGCTG
GGGGAATACCAGAGAGCTCGAATTTACCCAACAAGTTATTGTCCCTGGTT
CTTGTCCTTTCACCTTCATAAACTTGGATCAACACACCAGGTTGGTTGTC
AAAGTAAGTTGAAAAAACCTGCTCCTTCTTGGGGGGAATGGTCGTGTTCC
TTGGAATCAACACAGTCATGACACCACCAGCAGTCTCCAAACCAAGGGAG
AAAGGCGTGACATCCAATAGCAAAAGATCCTGCACCTTCTCATTACCCTC
ACCACTCAAGATAGCAGCTTGCACAGCAGCACCATAGGCAACAGCCTCAT
CGGGGTTGGTGCTCTTGCAAAGCTCCTTCCCATTAAAGAAATCTTGCAAA
AGCTGCTGGACTTTGGGAATCCTAGTAAATCCTCC
back to top