CB304793

Overview
NameCB304793
Unique NameCB304793
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length585
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11598 contig Csv1_Contig11598:259..843. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: GRP78_PONAB (78 kDa glucose-regulated protein OS=Pongo abelii GN=HSPA5 PE=2 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.185e-59
Identity = 115/186 (61.83%), Postives = 139/186 (74.73%), Query Frame = -1
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TRIPK+QQL+++FFNGKE  +  NPDE           +LSG+  +   DL LLDV P +LG+ET GGVMT LIPRNT +P KK Q+FST  DNQP V I+VYEGER  T+DN+LLG F+L+GIPPAPRGVPQI V F+ID NGIL V+AEDK  G KNKITI ND+ RL+ +EIE+MV +AE
Sbjct:  363 GGSTRIPKIQQLVKEFFNGKEPSRGINPDEAVAYGAAVQAGVLSGD--QDTGDLALLDVCPLTLGIETVGGVMTKLIPRNTVVPTKKSQIFSTASDNQPTVTIKVYEGERPLTKDNHLLGTFDLTGIPPAPRGVPQIEVTFEIDVNGILRVTAEDKGTGNKNKITITNDQNRLTPEEIERMVNDAE 546          
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: GRP78_DEBHA (78 kDa glucose-regulated protein homolog OS=Debaryomyces hansenii GN=KAR2 PE=3 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 1.547e-59
Identity = 117/186 (62.90%), Postives = 137/186 (73.66%), Query Frame = -1
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TRIPKVQ+LL+ FF+GK+  K  NPDE           +LSGE  E V D++LLDV P +LG+ET GGVMT LI RNT IP KK Q+FST  DNQP VLIQV+EGER   +DNN LGKFEL+ IPPAPRGVPQI V F +DANGIL V A DK  G+   ITI NDKGRLSK++I++MV+EAE
Sbjct:  382 GGSTRIPKVQELLEKFFDGKKASKGINPDEAVAYGAAVQAGVLSGE--EGVHDIVLLDVNPLTLGIETTGGVMTTLINRNTAIPTKKSQIFSTAADNQPTVLIQVFEGERALAKDNNKLGKFELTSIPPAPRGVPQIEVTFSLDANGILKVEAMDKGTGKSESITITNDKGRLSKEDIDRMVEEAE 565          
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: BIP2_TOBAC (Luminal-binding protein 2 (Fragment) OS=Nicotiana tabacum GN=BIP2 PE=2 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 2.021e-59
Identity = 115/179 (64.25%), Postives = 137/179 (76.54%), Query Frame = -1
Query:   28 KVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 564
            KVQQLL+D+F+GKE  K  NPDE           ILSGEG ++ +D+LLLDV P +LG+ET GGVMT LIPRNT IP KK QVF+TY D Q  V IQV+EGER+ T+D  LLGKF+L+GI PAPRG PQI V F++DANGILNV AEDK  G+  KITI NDKGRLS++EIE+MV+EAE
Sbjct:    1 KVQQLLKDYFDGKEPNKGVNPDEAVAFGAAVQGGILSGEGGDETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLTGIAPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQEEIERMVREAE 179          
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: BIP1_TOBAC (Luminal-binding protein 1 (Fragment) OS=Nicotiana tabacum GN=BIP1 PE=2 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 2.021e-59
Identity = 115/179 (64.25%), Postives = 137/179 (76.54%), Query Frame = -1
Query:   28 KVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 564
            KVQQLL+D+F+GKE  K  NPDE           ILSGEG ++ +D+LLLDV P +LG+ET GGVMT LIPRNT IP KK QVF+TY D Q  V IQV+EGER+ T+D  LLGKF+L+GI PAPRG PQI V F++DANGILNV AEDK  G+  KITI NDKGRLS++EIE+MV+EAE
Sbjct:    1 KVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLTGIAPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQEEIERMVREAE 179          
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: HSP7C_CAEBR (Heat shock 70 kDa protein C OS=Caenorhabditis briggsae GN=hsp-3 PE=3 SV=2)

HSP 1 Score: 227.639 bits (579), Expect = 3.447e-59
Identity = 114/186 (61.29%), Postives = 140/186 (75.27%), Query Frame = -1
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TRIPKVQQL+++FFNGKE  +  NPDE           ++SGE  E   +++LLDV P ++G+ET GGVMT LI RNT IP KK QVFST  DNQP V IQV+EGER  T+DN+ LGKF+L+GIPPAPRGVPQI V F+ID NGIL+V+AEDK  G KNKITI ND+ RLS ++IE+M+ +AE
Sbjct:  368 GGSTRIPKVQQLIKEFFNGKEPSRGINPDEAVAYGAAVQGGVISGE--EDTGEIVLLDVNPLTMGIETVGGVMTKLISRNTVIPTKKSQVFSTAADNQPTVTIQVFEGERPMTKDNHQLGKFDLTGIPPAPRGVPQIEVTFEIDVNGILHVTAEDKGTGNKNKITITNDQNRLSPEDIERMINDAE 551          
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: GRP78_XENLA (78 kDa glucose-regulated protein OS=Xenopus laevis GN=hspa5 PE=2 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 4.502e-59
Identity = 114/186 (61.29%), Postives = 139/186 (74.73%), Query Frame = -1
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TRIPK+QQL+++ FNGKE  +  NPDE           +LSG+  +   DL+LLDV P +LG+ET GGVMT LIPRNT +P KK Q+FST  DNQP V I+VYEGER  T+DN+LLG F+L+GIPPAPRGVPQI V F+ID NGIL V+AEDK  G KNKITI ND+ RL+ +EIE+MV +AE
Sbjct:  364 GGSTRIPKIQQLVKELFNGKEPSRGINPDEAVAYGAAVQAGVLSGD--QDTGDLVLLDVCPLTLGIETVGGVMTKLIPRNTVVPTKKSQIFSTASDNQPTVTIKVYEGERPLTKDNHLLGTFDLTGIPPAPRGVPQIEVTFEIDVNGILRVTAEDKGTGNKNKITITNDQNRLTPEEIERMVTDAE 547          
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: GRP78_SPETR (78 kDa glucose-regulated protein OS=Spermophilus tridecemlineatus GN=HSPA5 PE=2 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 5.880e-59
Identity = 114/186 (61.29%), Postives = 139/186 (74.73%), Query Frame = -1
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TRIPK+QQL+++FFNGKE  +  NPDE           +LSG+  +   DL+LLDV P +LG+ET GGVMT LIPRNT +P KK Q+ ST  DNQP V I+VYEGER  T+DN+LLG F+L+GIPPAPRGVPQI V F+ID NGIL V+AEDK  G KNKITI ND+ RL+ +EIE+MV +AE
Sbjct:  363 GGSTRIPKIQQLVKEFFNGKEPSRGINPDEAVAYGAAVQAGVLSGD--QDTGDLVLLDVCPLTLGIETVGGVMTKLIPRNTVVPTKKSQISSTASDNQPTVTIKVYEGERPLTKDNHLLGTFDLTGIPPAPRGVPQIEVTFEIDVNGILRVTAEDKGTGNKNKITITNDQNRLTPEEIERMVNDAE 546          
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: HSP7C_CAEEL (Heat shock 70 kDa protein C OS=Caenorhabditis elegans GN=hsp-3 PE=2 SV=2)

HSP 1 Score: 226.483 bits (576), Expect = 7.679e-59
Identity = 113/186 (60.75%), Postives = 140/186 (75.27%), Query Frame = -1
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TRIPKVQQL+++FFNGKE  +  NPDE           ++SGE  E   +++LLDV P ++G+ET GGVMT LI RNT IP KK QVFST  DNQP V IQV+EGER  T+DN+ LGKF+L+G+PPAPRGVPQI V F+ID NGIL+V+AEDK  G KNKITI ND+ RLS ++IE+M+ +AE
Sbjct:  368 GGSTRIPKVQQLIKEFFNGKEPSRGINPDEAVAYGAAVQGGVISGE--EDTGEIVLLDVNPLTMGIETVGGVMTKLIGRNTVIPTKKSQVFSTAADNQPTVTIQVFEGERPMTKDNHQLGKFDLTGLPPAPRGVPQIEVTFEIDVNGILHVTAEDKGTGNKNKITITNDQNRLSPEDIERMINDAE 551          
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: GRP78_PLAFO (78 kDa glucose-regulated protein homolog OS=Plasmodium falciparum (isolate NF54) PE=3 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 7.679e-59
Identity = 116/188 (61.70%), Postives = 141/188 (75.00%), Query Frame = -1
Query:   28 GGFTRIPKVQQLLQDF--FNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TRIPK+QQ++++F  FNGKE  +  NPDE           I+ GE   ++QD++LLDVTP +LG+ET GG+MT LI RNT IP KK Q FSTY DNQP VLIQV+EGER  T+DN+LLGKFELSGIPPA RGVP+I V F +D NGIL+V AEDK  G+   ITI NDKGRLSK++IEKM+ +AE
Sbjct:  361 GGSTRIPKIQQIIKEFEFFNGKEPNRGINPDEAVAYGAAIQAGIILGE---ELQDVVLLDVTPLTLGIETVGGIMTQLIKRNTVIPTKKSQTFSTYQDNQPAVLIQVFEGERALTKDNHLLGKFELSGIPPAQRGVPKIEVTFTVDKNGILHVEAEDKGTGKSRGITITNDKGRLSKEQIEKMINDAE 545          
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: HSP70_MIMIV (Heat shock 70 kDa protein homolog OS=Acanthamoeba polyphaga mimivirus GN=HSP70 PE=3 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 2.234e-58
Identity = 112/186 (60.22%), Postives = 144/186 (77.42%), Query Frame = -1
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG +RIPKV+QLL +FFNGK+L ++ NPDE          AIL G+ +EK+Q+++L+DVTP SLGLETAGG+MT +I RNTTIP KK +VF+TY DNQ  V IQ++EGER  T+DNN LG F L GIPPA RGVPQI V FD+DANGILNV+A DK+  +   ITI N++GR S+D+IE+M++EA+
Sbjct:  338 GGSSRIPKVRQLLSNFFNGKKLNETVNPDEAVAYGAAIQAAILVGQTDEKLQNIVLVDVTPLSLGLETAGGIMTNIIDRNTTIPCKKSRVFTTYSDNQTVVTIQIFEGERKFTKDNNNLGTFNLEGIPPAQRGVPQIEVTFDLDANGILNVTAADKSTNKSKNITITNNRGRFSEDQIERMIREAK 523          
The following BLAST results are available for this feature:
BLAST of CB304793 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GRP78_PONAB1.185e-5961.8378 kDa glucose-regulated protein OS=Pongo abelii G... [more]
GRP78_DEBHA1.547e-5962.9078 kDa glucose-regulated protein homolog OS=Debary... [more]
BIP2_TOBAC2.021e-5964.25Luminal-binding protein 2 (Fragment) OS=Nicotiana ... [more]
BIP1_TOBAC2.021e-5964.25Luminal-binding protein 1 (Fragment) OS=Nicotiana ... [more]
HSP7C_CAEBR3.447e-5961.29Heat shock 70 kDa protein C OS=Caenorhabditis brig... [more]
GRP78_XENLA4.502e-5961.2978 kDa glucose-regulated protein OS=Xenopus laevis... [more]
GRP78_SPETR5.880e-5961.2978 kDa glucose-regulated protein OS=Spermophilus t... [more]
HSP7C_CAEEL7.679e-5960.75Heat shock 70 kDa protein C OS=Caenorhabditis eleg... [more]
GRP78_PLAFO7.679e-5961.7078 kDa glucose-regulated protein homolog OS=Plasmo... [more]
HSP70_MIMIV2.234e-5860.22Heat shock 70 kDa protein homolog OS=Acanthamoeba ... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IVaR_A03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_A03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304793 ID=CB304793; Name=CB304793; organism=Citrus sinensis; type=EST; length=585bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCGCCTCTTGAACCATCTTCT
CAATTTCATCCTTTGAAAGTCTTCCTTTGTCATTAGCGATGGTGATCTTG
TTCTTTTGACCAGGGGTCTTGTCCTCGGCAGACACATTCAGGATACCATT
GGCATCGATGTCGAAGCACACAGTGATTTGAGGAACACCCCTAGGAGCTG
GGGGAATACCAGAGAGCTCGAATTTACCCAACAAGTTATTGTCCCTGGTT
CTTGTCCTTTCACCTTCATAAACTTGGATCAACACACCAGGTTGGTTGTC
AAAGTAAGTTGAAAAAACCTGCTCCTTCTTGGGGGGAATGGTCGTGTTCC
TTGGAATCAACACAGTCATGACACCACCAGCAGTCTCCAAACCAAGGGAG
AAAGGCGTGACATCCAATAGCAAAAGATCCTGCACCTTCTCATTACCCTC
ACCACTCAAGATAGCAGCTTGCACAGCAGCACCATAGGCAACAGCCTCAT
CGGGGTTGGTGCTCTTGCAAAGCTCCTTCCCATTAAAGAAATCTTGCAAA
AGCTGCTGGACTTTGGGAATCCTAGTAAATCCTCC
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