CB304793

Overview
NameCB304793
Unique NameCB304793
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length585
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: DNAK_MYCSJ (Chaperone protein dnaK OS=Mycobacterium sp. (strain JLS) GN=dnaK PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 6.516e-50
Identity = 104/186 (55.91%), Postives = 131/186 (70.43%), Query Frame = -1
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TR+P V +L+++   GKE  K  NPDE           +L GE    V+D+LLLDVTP SLG+ET GGVMT LI RNTTIP K+ + F+T  DNQP V IQV++GER     N LLG FEL+GIPPAPRGVPQI V FDIDANGI++V+A+DK  G++N I I    G LSK+EI++M+++AE
Sbjct:  314 GGSTRMPAVSELVKEMTGGKEPNKGVNPDEVVAVGAALQAGVLKGE----VKDVLLLDVTPLSLGIETKGGVMTKLIERNTTIPTKRSETFTTADDNQPSVQIQVFQGEREIASHNKLLGSFELTGIPPAPRGVPQIEVTFDIDANGIVHVTAKDKGTGKENTIRIQEGSG-LSKEEIDRMIKDAE 494          
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: DNAK_MYCGI (Chaperone protein dnaK OS=Mycobacterium gilvum (strain PYR-GCK) GN=dnaK PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 6.516e-50
Identity = 104/186 (55.91%), Postives = 131/186 (70.43%), Query Frame = -1
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TR+P V +L+++   GKE  K  NPDE           +L GE    V+D+LLLDVTP SLG+ET GGVMT LI RNTTIP K+ + F+T  DNQP V IQV++GER     N LLG FEL+GIPPAPRGVPQI V FDIDANGI++V+A+DK  G++N I I    G LSK+EI++M+++AE
Sbjct:  314 GGSTRMPAVSELVKEMTGGKEPNKGVNPDEVVAVGAALQAGVLKGE----VKDVLLLDVTPLSLGIETKGGVMTKLIERNTTIPTKRSETFTTADDNQPSVQIQVFQGEREIASHNKLLGSFELTGIPPAPRGVPQIEVTFDIDANGIVHVTAKDKGTGKENTIKIQEGSG-LSKEEIDRMIKDAE 494          
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: DNAK_MAGSA (Chaperone protein dnaK OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=dnaK PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 6.516e-50
Identity = 105/186 (56.45%), Postives = 133/186 (71.51%), Query Frame = -1
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TR+PK+Q+++++FF G+E  K  NPDE           +L GE    V+D+LLLDVTP SLG+ET GGV T LI RNTTIP +K QVFST  DNQ  V I+V++GER    DN +LG+F+L GIPPAPRGVPQ+ V FDIDANG++NVSA+DK  G++ +I I    G LS  +IEKMV+EAE
Sbjct:  336 GGMTRMPKIQEVVKEFF-GREPHKGVNPDEVVAIGAAIQGGVLKGE----VKDVLLLDVTPLSLGIETLGGVFTRLIDRNTTIPTRKSQVFSTAEDNQTAVTIRVFQGEREMAADNKVLGQFDLVGIPPAPRGVPQVEVTFDIDANGLVNVSAKDKATGKEQQIRI-QASGGLSDADIEKMVKEAE 515          
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: DNAK_FRATM (Chaperone protein dnaK OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=dnaK PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 6.516e-50
Identity = 108/186 (58.06%), Postives = 132/186 (70.97%), Query Frame = -1
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TR+P VQ+ +++FF GKE  K  NPDE           +L+G+    V+D+LLLDVTP SLG+ET GGVMT LI RNTTIP KK QVFST  DNQP V I V +GER     N  LG+F+L+ IPPAPRG+PQI V FDIDANGILNVSA+DK  G++  I I +  G LS+++IEKMVQ+AE
Sbjct:  343 GGQTRMPLVQEKVKEFF-GKEPRKDMNPDEAVAVGAAIQGGVLAGD----VKDVLLLDVTPLSLGIETMGGVMTKLIERNTTIPTKKSQVFSTAEDNQPAVTIHVLQGEREMASANKSLGRFDLADIPPAPRGMPQIEVTFDIDANGILNVSAKDKATGKEQNIVIKSSSG-LSEEDIEKMVQDAE 522          
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: HSP7M_PHAVU (Heat shock 70 kDa protein, mitochondrial OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 8.510e-50
Identity = 108/186 (58.06%), Postives = 132/186 (70.97%), Query Frame = -1
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TR+PKVQ+++ + F GK   K  NPDE           IL G+    V++LLLLDVTP SLG+ET GG+ T LI RNTTIP KK QVFST  DNQ  V I+V +GER    DN +LG+F+L GIPPAPRG+PQI V FDIDANGI+ VSA+DK+ G++ +ITI    G LS+DEIEKMV+EAE
Sbjct:  384 GGMTRVPKVQEVVLNIF-GKSPSKGVNPDEAVAMGAAIQGGILRGD----VKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMASDNKMLGEFDLVGIPPAPRGLPQIEVTFDIDANGIVTVSAKDKSTGKEQQITI-RSSGGLSEDEIEKMVKEAE 563          
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: DNAK_RALPJ (Chaperone protein dnaK OS=Ralstonia pickettii (strain 12J) GN=dnaK PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 8.510e-50
Identity = 106/186 (56.99%), Postives = 129/186 (69.35%), Query Frame = -1
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TR+PKVQ+ +++FF GKE  K  NPDE           +L G+      D+LLLDVTP SLG+ET GGVMT +I +NTTIP K  Q FST  DNQP V I+VY+GER     N +LG+F L GIPPAPRG PQI V FDIDANGIL+V A+DK  G++NKITI    G LS+ EIE+MV++AE
Sbjct:  342 GGMTRMPKVQEKVKEFF-GKEARKDVNPDEAVAVGAAIQGQVLGGDRT----DVLLLDVTPLSLGIETLGGVMTKMIGKNTTIPTKFSQTFSTADDNQPAVTIKVYQGEREMASGNKMLGEFNLEGIPPAPRGTPQIEVSFDIDANGILHVGAKDKATGKENKITIKASSG-LSEAEIERMVKDAE 521          
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: DNAK_NOCFA (Chaperone protein dnaK OS=Nocardia farcinica GN=dnaK PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 8.510e-50
Identity = 104/186 (55.91%), Postives = 131/186 (70.43%), Query Frame = -1
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TR+P V  L+++   GKE  K  NPDE           +L GE    V+D+LLLDVTP SLG+ET GGVMT LI RNTTIP K+ + F+T  DNQP V IQV++GER     N LLG FEL+GIPPAPRGVPQI V FDIDANGI++V+A+DK  G++N I I +  G LSK+EI++M+++AE
Sbjct:  314 GGSTRMPAVSDLVRELTGGKEPNKGVNPDEVVAVGAALQAGVLKGE----VKDVLLLDVTPLSLGIETKGGVMTKLIERNTTIPTKRSETFTTADDNQPSVQIQVFQGEREIAAHNKLLGSFELTGIPPAPRGVPQIEVTFDIDANGIVHVTAKDKGTGKENTIKIQDGSG-LSKEEIDRMIKDAE 494          
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: DNAK_MYCUA (Chaperone protein dnaK OS=Mycobacterium ulcerans (strain Agy99) GN=dnaK PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 8.510e-50
Identity = 105/186 (56.45%), Postives = 130/186 (69.89%), Query Frame = -1
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TR+P V +L+++   GKE  K  NPDE           +L GE    V+D+LLLDVTP SLG+ET GGVMT LI RNTTIP K+ + F+T  DNQP V IQVY+GER     N LLG FEL+GIPPAPRGV QI V FDIDANGI++V+A+DK  G++N I I    G LSKDEI++M+++AE
Sbjct:  314 GGSTRMPAVTELVKELTGGKEPNKGVNPDEVVAVGAALQAGVLKGE----VKDVLLLDVTPLSLGIETKGGVMTKLIERNTTIPTKRSETFTTADDNQPSVQIQVYQGEREIAAHNKLLGSFELTGIPPAPRGVSQIEVTFDIDANGIVHVTAKDKGTGKENTIRIQEGSG-LSKDEIDRMIKDAE 494          
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: DNAK_METI4 (Chaperone protein dnaK OS=Methylacidiphilum infernorum (isolate V4) GN=dnaK PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 8.510e-50
Identity = 105/186 (56.45%), Postives = 131/186 (70.43%), Query Frame = -1
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TR+PK+ ++ +    G+E  K  NPDE          A+L G+    V+D+LLLDVTP +L +ETAGG+ T +IPRNTTIP +K Q+FST+ DNQP V I+V +GER   RDN LLG F L GIPPAPRGVPQI V FDIDANGIL+VSA+D   G++ KITI    G LSK+EIE+M +EAE
Sbjct:  338 GGMTRMPKIIEIARKLI-GREPHKGVNPDEVVAVGAAIQGAVLKGQ----VKDVLLLDVTPLTLSIETAGGIATPMIPRNTTIPTRKSQIFSTFSDNQPSVEIKVLQGERPMARDNKLLGVFHLDGIPPAPRGVPQIEVTFDIDANGILHVSAKDLGTGREQKITITGSSG-LSKEEIERMTKEAE 517          
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: DNAK_JANMA (Chaperone protein dnaK OS=Janthinobacterium sp. (strain Marseille) GN=dnaK PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.111e-49
Identity = 106/186 (56.99%), Postives = 133/186 (71.51%), Query Frame = -1
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TR+PKVQ+ ++DFF GK+  K  NPDE          ++LSG+     +DLLLLDVTP SLG+ET GGVMT +I +NTTIP K  QVFST  DNQP V I+V++GER     N  LG+F L GIPP+ RG PQI V FDIDANGIL+V A+DK  G++NKITI  + G L+++EI+KMVQ+AE
Sbjct:  342 GGMTRMPKVQETVKDFF-GKDPRKDVNPDEAVAVGAAIQGSVLSGDR----KDLLLLDVTPLSLGIETLGGVMTKMIQKNTTIPTKFSQVFSTADDNQPAVTIKVFQGEREMAVGNKALGEFNLEGIPPSARGTPQIEVTFDIDANGILHVGAKDKATGKENKITIKANSG-LTEEEIQKMVQDAE 521          
The following BLAST results are available for this feature:
BLAST of CB304793 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_MYCSJ6.516e-5055.91Chaperone protein dnaK OS=Mycobacterium sp. (strai... [more]
DNAK_MYCGI6.516e-5055.91Chaperone protein dnaK OS=Mycobacterium gilvum (st... [more]
DNAK_MAGSA6.516e-5056.45Chaperone protein dnaK OS=Magnetospirillum magneti... [more]
DNAK_FRATM6.516e-5058.06Chaperone protein dnaK OS=Francisella tularensis s... [more]
HSP7M_PHAVU8.510e-5058.06Heat shock 70 kDa protein, mitochondrial OS=Phaseo... [more]
DNAK_RALPJ8.510e-5056.99Chaperone protein dnaK OS=Ralstonia pickettii (str... [more]
DNAK_NOCFA8.510e-5055.91Chaperone protein dnaK OS=Nocardia farcinica GN=dn... [more]
DNAK_MYCUA8.510e-5056.45Chaperone protein dnaK OS=Mycobacterium ulcerans (... [more]
DNAK_METI48.510e-5056.45Chaperone protein dnaK OS=Methylacidiphilum infern... [more]
DNAK_JANMA1.111e-4956.99Chaperone protein dnaK OS=Janthinobacterium sp. (s... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IVaR_A03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_A03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304793 ID=CB304793; Name=CB304793; organism=Citrus sinensis; type=EST; length=585bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCGCCTCTTGAACCATCTTCT
CAATTTCATCCTTTGAAAGTCTTCCTTTGTCATTAGCGATGGTGATCTTG
TTCTTTTGACCAGGGGTCTTGTCCTCGGCAGACACATTCAGGATACCATT
GGCATCGATGTCGAAGCACACAGTGATTTGAGGAACACCCCTAGGAGCTG
GGGGAATACCAGAGAGCTCGAATTTACCCAACAAGTTATTGTCCCTGGTT
CTTGTCCTTTCACCTTCATAAACTTGGATCAACACACCAGGTTGGTTGTC
AAAGTAAGTTGAAAAAACCTGCTCCTTCTTGGGGGGAATGGTCGTGTTCC
TTGGAATCAACACAGTCATGACACCACCAGCAGTCTCCAAACCAAGGGAG
AAAGGCGTGACATCCAATAGCAAAAGATCCTGCACCTTCTCATTACCCTC
ACCACTCAAGATAGCAGCTTGCACAGCAGCACCATAGGCAACAGCCTCAT
CGGGGTTGGTGCTCTTGCAAAGCTCCTTCCCATTAAAGAAATCTTGCAAA
AGCTGCTGGACTTTGGGAATCCTAGTAAATCCTCC
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