CB304793

Overview
NameCB304793
Unique NameCB304793
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length585
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11598 contig Csv1_Contig11598:259..843. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: HSP77_YEAST (Heat shock protein SSC1, mitochondrial OS=Saccharomyces cerevisiae GN=SSC1 PE=1 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 3.575e-48
Identity = 104/186 (55.91%), Postives = 130/186 (69.89%), Query Frame = -1
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG +R+PKV + ++  F GK+  K+ NPDE          A+LSGE    V D+LLLDVTP SLG+ET GGV T LIPRNTTIP KK Q+FST    Q  V I+V++GER   RDN L+G F L+GIPPAP+GVPQI V FDIDA+GI+NVSA DK   + + IT+A   G LS++EIE+MV +AE
Sbjct:  364 GGMSRMPKVVETVKSLF-GKDPSKAVNPDEAVAIGAAVQGAVLSGE----VTDVLLLDVTPLSLGIETLGGVFTRLIPRNTTIPTKKSQIFSTAAAGQTSVEIRVFQGERELVRDNKLIGNFTLAGIPPAPKGVPQIEVTFDIDADGIINVSARDKATNKDSSITVAGSSG-LSENEIEQMVNDAE 543          
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: DNAK_YERPY (Chaperone protein dnaK OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=dnaK PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 3.575e-48
Identity = 107/186 (57.53%), Postives = 130/186 (69.89%), Query Frame = -1
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TR+P VQ+ + DFF GKE  K  NPDE           +LSGE    V+D+LLLDVTP SLG+ET GGVMT LI +NTTIP K  QVFST  DNQ  V I V +GER R +DN  LG+F L GI PAPRG+ QI V FDIDA+GIL+VSA+DK  G++ KITI    G L+++EI+KMV++AE
Sbjct:  341 GGQTRMPMVQKKVADFF-GKEPRKDVNPDEAVAIGAAVQGGVLSGE----VKDVLLLDVTPLSLGIETMGGVMTPLITKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAQDNKSLGQFNLDGIQPAPRGMAQIEVTFDIDADGILHVSAKDKNTGREQKITIKASSG-LNEEEIQKMVRDAE 520          
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: DNAK_YERPS (Chaperone protein dnaK OS=Yersinia pseudotuberculosis GN=dnaK PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 3.575e-48
Identity = 107/186 (57.53%), Postives = 130/186 (69.89%), Query Frame = -1
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TR+P VQ+ + DFF GKE  K  NPDE           +LSGE    V+D+LLLDVTP SLG+ET GGVMT LI +NTTIP K  QVFST  DNQ  V I V +GER R +DN  LG+F L GI PAPRG+ QI V FDIDA+GIL+VSA+DK  G++ KITI    G L+++EI+KMV++AE
Sbjct:  341 GGQTRMPMVQKKVADFF-GKEPRKDVNPDEAVAIGAAVQGGVLSGE----VKDVLLLDVTPLSLGIETMGGVMTPLITKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAQDNKSLGQFNLDGIQPAPRGMAQIEVTFDIDADGILHVSAKDKNTGREQKITIKASSG-LNEEEIQKMVRDAE 520          
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: DNAK_YERPP (Chaperone protein dnaK OS=Yersinia pestis (strain Pestoides F) GN=dnaK PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 3.575e-48
Identity = 107/186 (57.53%), Postives = 130/186 (69.89%), Query Frame = -1
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TR+P VQ+ + DFF GKE  K  NPDE           +LSGE    V+D+LLLDVTP SLG+ET GGVMT LI +NTTIP K  QVFST  DNQ  V I V +GER R +DN  LG+F L GI PAPRG+ QI V FDIDA+GIL+VSA+DK  G++ KITI    G L+++EI+KMV++AE
Sbjct:  341 GGQTRMPMVQKKVADFF-GKEPRKDVNPDEAVAIGAAVQGGVLSGE----VKDVLLLDVTPLSLGIETMGGVMTPLITKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAQDNKSLGQFNLDGIQPAPRGMAQIEVTFDIDADGILHVSAKDKNTGREQKITIKASSG-LNEEEIQKMVRDAE 520          
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: DNAK_YERPN (Chaperone protein dnaK OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=dnaK PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 3.575e-48
Identity = 107/186 (57.53%), Postives = 130/186 (69.89%), Query Frame = -1
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TR+P VQ+ + DFF GKE  K  NPDE           +LSGE    V+D+LLLDVTP SLG+ET GGVMT LI +NTTIP K  QVFST  DNQ  V I V +GER R +DN  LG+F L GI PAPRG+ QI V FDIDA+GIL+VSA+DK  G++ KITI    G L+++EI+KMV++AE
Sbjct:  341 GGQTRMPMVQKKVADFF-GKEPRKDVNPDEAVAIGAAVQGGVLSGE----VKDVLLLDVTPLSLGIETMGGVMTPLITKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAQDNKSLGQFNLDGIQPAPRGMAQIEVTFDIDADGILHVSAKDKNTGREQKITIKASSG-LNEEEIQKMVRDAE 520          
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: DNAK_YERPG (Chaperone protein dnaK OS=Yersinia pestis bv. Antiqua (strain Angola) GN=dnaK PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 3.575e-48
Identity = 107/186 (57.53%), Postives = 130/186 (69.89%), Query Frame = -1
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TR+P VQ+ + DFF GKE  K  NPDE           +LSGE    V+D+LLLDVTP SLG+ET GGVMT LI +NTTIP K  QVFST  DNQ  V I V +GER R +DN  LG+F L GI PAPRG+ QI V FDIDA+GIL+VSA+DK  G++ KITI    G L+++EI+KMV++AE
Sbjct:  341 GGQTRMPMVQKKVADFF-GKEPRKDVNPDEAVAIGAAVQGGVLSGE----VKDVLLLDVTPLSLGIETMGGVMTPLITKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAQDNKSLGQFNLDGIQPAPRGMAQIEVTFDIDADGILHVSAKDKNTGREQKITIKASSG-LNEEEIQKMVRDAE 520          
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: DNAK_YERPE (Chaperone protein dnaK OS=Yersinia pestis GN=dnaK PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 3.575e-48
Identity = 107/186 (57.53%), Postives = 130/186 (69.89%), Query Frame = -1
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TR+P VQ+ + DFF GKE  K  NPDE           +LSGE    V+D+LLLDVTP SLG+ET GGVMT LI +NTTIP K  QVFST  DNQ  V I V +GER R +DN  LG+F L GI PAPRG+ QI V FDIDA+GIL+VSA+DK  G++ KITI    G L+++EI+KMV++AE
Sbjct:  341 GGQTRMPMVQKKVADFF-GKEPRKDVNPDEAVAIGAAVQGGVLSGE----VKDVLLLDVTPLSLGIETMGGVMTPLITKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAQDNKSLGQFNLDGIQPAPRGMAQIEVTFDIDADGILHVSAKDKNTGREQKITIKASSG-LNEEEIQKMVRDAE 520          
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: DNAK_YERPB (Chaperone protein dnaK OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=dnaK PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 3.575e-48
Identity = 107/186 (57.53%), Postives = 130/186 (69.89%), Query Frame = -1
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TR+P VQ+ + DFF GKE  K  NPDE           +LSGE    V+D+LLLDVTP SLG+ET GGVMT LI +NTTIP K  QVFST  DNQ  V I V +GER R +DN  LG+F L GI PAPRG+ QI V FDIDA+GIL+VSA+DK  G++ KITI    G L+++EI+KMV++AE
Sbjct:  341 GGQTRMPMVQKKVADFF-GKEPRKDVNPDEAVAIGAAVQGGVLSGE----VKDVLLLDVTPLSLGIETMGGVMTPLITKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAQDNKSLGQFNLDGIQPAPRGMAQIEVTFDIDADGILHVSAKDKNTGREQKITIKASSG-LNEEEIQKMVRDAE 520          
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: DNAK_YERPA (Chaperone protein dnaK OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=dnaK PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 3.575e-48
Identity = 107/186 (57.53%), Postives = 130/186 (69.89%), Query Frame = -1
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TR+P VQ+ + DFF GKE  K  NPDE           +LSGE    V+D+LLLDVTP SLG+ET GGVMT LI +NTTIP K  QVFST  DNQ  V I V +GER R +DN  LG+F L GI PAPRG+ QI V FDIDA+GIL+VSA+DK  G++ KITI    G L+++EI+KMV++AE
Sbjct:  341 GGQTRMPMVQKKVADFF-GKEPRKDVNPDEAVAIGAAVQGGVLSGE----VKDVLLLDVTPLSLGIETMGGVMTPLITKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAQDNKSLGQFNLDGIQPAPRGMAQIEVTFDIDADGILHVSAKDKNTGREQKITIKASSG-LNEEEIQKMVRDAE 520          
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: DNAK_YERE8 (Chaperone protein dnaK OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=dnaK PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 3.575e-48
Identity = 107/186 (57.53%), Postives = 130/186 (69.89%), Query Frame = -1
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TR+P VQ+ + DFF GKE  K  NPDE           +LSGE    V+D+LLLDVTP SLG+ET GGVMT LI +NTTIP K  QVFST  DNQ  V I V +GER R +DN  LG+F L GI PAPRG+ QI V FDIDA+GIL+VSA+DK  G++ KITI    G L+++EI+KMV++AE
Sbjct:  341 GGQTRMPMVQKKVADFF-GKEPRKDVNPDEAVAIGAAVQGGVLSGE----VKDVLLLDVTPLSLGIETMGGVMTPLITKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAQDNKSLGQFNLDGIQPAPRGMAQIEVTFDIDADGILHVSAKDKNTGREQKITIKASSG-LNEEEIQKMVRDAE 520          
The following BLAST results are available for this feature:
BLAST of CB304793 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HSP77_YEAST3.575e-4855.91Heat shock protein SSC1, mitochondrial OS=Saccharo... [more]
DNAK_YERPY3.575e-4857.53Chaperone protein dnaK OS=Yersinia pseudotuberculo... [more]
DNAK_YERPS3.575e-4857.53Chaperone protein dnaK OS=Yersinia pseudotuberculo... [more]
DNAK_YERPP3.575e-4857.53Chaperone protein dnaK OS=Yersinia pestis (strain ... [more]
DNAK_YERPN3.575e-4857.53Chaperone protein dnaK OS=Yersinia pestis bv. Anti... [more]
DNAK_YERPG3.575e-4857.53Chaperone protein dnaK OS=Yersinia pestis bv. Anti... [more]
DNAK_YERPE3.575e-4857.53Chaperone protein dnaK OS=Yersinia pestis GN=dnaK ... [more]
DNAK_YERPB3.575e-4857.53Chaperone protein dnaK OS=Yersinia pseudotuberculo... [more]
DNAK_YERPA3.575e-4857.53Chaperone protein dnaK OS=Yersinia pestis bv. Anti... [more]
DNAK_YERE83.575e-4857.53Chaperone protein dnaK OS=Yersinia enterocolitica ... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IVaR_A03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_A03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304793 ID=CB304793; Name=CB304793; organism=Citrus sinensis; type=EST; length=585bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCGCCTCTTGAACCATCTTCT
CAATTTCATCCTTTGAAAGTCTTCCTTTGTCATTAGCGATGGTGATCTTG
TTCTTTTGACCAGGGGTCTTGTCCTCGGCAGACACATTCAGGATACCATT
GGCATCGATGTCGAAGCACACAGTGATTTGAGGAACACCCCTAGGAGCTG
GGGGAATACCAGAGAGCTCGAATTTACCCAACAAGTTATTGTCCCTGGTT
CTTGTCCTTTCACCTTCATAAACTTGGATCAACACACCAGGTTGGTTGTC
AAAGTAAGTTGAAAAAACCTGCTCCTTCTTGGGGGGAATGGTCGTGTTCC
TTGGAATCAACACAGTCATGACACCACCAGCAGTCTCCAAACCAAGGGAG
AAAGGCGTGACATCCAATAGCAAAAGATCCTGCACCTTCTCATTACCCTC
ACCACTCAAGATAGCAGCTTGCACAGCAGCACCATAGGCAACAGCCTCAT
CGGGGTTGGTGCTCTTGCAAAGCTCCTTCCCATTAAAGAAATCTTGCAAA
AGCTGCTGGACTTTGGGAATCCTAGTAAATCCTCC
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