CB304793

Overview
NameCB304793
Unique NameCB304793
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length585
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11598 contig Csv1_Contig11598:259..843. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: DNAK_EDWI9 (Chaperone protein dnaK OS=Edwardsiella ictaluri (strain 93-146) GN=dnaK PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 4.669e-48
Identity = 106/186 (56.99%), Postives = 129/186 (69.35%), Query Frame = -1
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TR+P VQ+ + DFF GKE  K  NPDE           +L+G+    V+D+LLLDVTP SLG+ET GGVMT LI +NTTIP K  QVFST  DNQ  V I V +GER R  DN  LG+F L GI PAPRG+PQI V FDIDA+GIL+VSA+DK  G++  ITI    G LS+DEI++MV++AE
Sbjct:  341 GGQTRMPMVQKQVADFF-GKEPRKDVNPDEAVAIGAAVQGGVLAGD----VKDVLLLDVTPLSLGIETMGGVMTALISKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGIQPAPRGMPQIEVTFDIDADGILHVSAKDKNSGREQNITIKASSG-LSEDEIKQMVRDAE 520          
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: DNAK_CAUCR (Chaperone protein dnaK OS=Caulobacter crescentus GN=dnaK PE=2 SV=2)

HSP 1 Score: 190.66 bits (483), Expect = 4.669e-48
Identity = 103/186 (55.38%), Postives = 128/186 (68.82%), Query Frame = -1
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG +R+PKVQQ +QDFF G+E  K  NPDE           +L G+    V+D+LLLDVTP +LG+ET GGV T LI RNTTIP K+ Q FST  DNQ  V I+V++GER   +DN +LG+F+L GIPPAPRGVPQI V FDIDANGI+ V A+DK   ++  I I    G LS  +IE+MV+EAE
Sbjct:  336 GGMSRMPKVQQAVQDFF-GREPHKGVNPDEVVALGAAVQAGVLQGD----VKDVLLLDVTPLTLGIETLGGVFTPLIERNTTIPTKRSQTFSTADDNQSAVTIRVFQGERPMAQDNKMLGQFDLVGIPPAPRGVPQIEVTFDIDANGIVQVHAKDKATNKEQSIRI-QANGGLSDSDIERMVKEAE 515          
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: DNAK_WOLTR (Chaperone protein dnaK OS=Wolbachia sp. subsp. Brugia malayi (strain TRS) GN=dnaK PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 6.099e-48
Identity = 103/186 (55.38%), Postives = 130/186 (69.89%), Query Frame = -1
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TR+P+V + +++FF GK+  +  NPDE           I+ G+    V+D+LLLDVTP SLG+ET GGV T LI RNTTIP KK QVFST  DNQ  V I+V++GER    DN LLG+F L GIPPAPRG+PQI V FDIDANGI++VSA+DK  G++ KI I    G LS+ EI +M++EAE
Sbjct:  331 GGMTRMPRVIEKVKEFF-GKDPHRGVNPDEVVAIGAAIQAGIVQGD----VRDVLLLDVTPLSLGIETLGGVFTPLIERNTTIPTKKSQVFSTAEDNQTAVTIKVHQGERKLAVDNKLLGQFSLEGIPPAPRGIPQIEVTFDIDANGIVHVSAKDKATGKEQKIRI-QSSGGLSESEINRMIREAE 510          
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: DNAK_TOLAT (Chaperone protein dnaK OS=Tolumonas auensis (strain DSM 9187 / TA4) GN=dnaK PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 6.099e-48
Identity = 108/186 (58.06%), Postives = 128/186 (68.82%), Query Frame = -1
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TR+P VQ+ + DFF GKE  K  NPDE          A+L+GE +    D+LLLDVTP SLG+ET G VMT LI +NTTIP KK QVFST  DNQ  V I V +GER R  DN  LG+F L GI PAPRG+PQI V FDIDA+GIL+VSA+DK  G++  ITI    G LS DEI++MV+EAE
Sbjct:  341 GGQTRMPMVQKAVADFF-GKEPRKDVNPDEAVAMGAAIQGAVLAGEKH----DVLLLDVTPLSLGIETMGSVMTTLIEKNTTIPTKKSQVFSTADDNQSAVTIHVLQGERKRATDNKSLGQFNLEGIRPAPRGLPQIEVTFDIDADGILHVSAKDKETGKEQNITIQASSG-LSDDEIQRMVREAE 520          
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: DNAK_PSEAE (Chaperone protein dnaK OS=Pseudomonas aeruginosa GN=dnaK PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 6.099e-48
Identity = 106/186 (56.99%), Postives = 131/186 (70.43%), Query Frame = -1
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TR+P VQ+ + +FF GKE  K  NPDE          A+L+G+    V+D+LLLDVTP +LG+ET GGVMT LI +NTTIP KK QVFST  DNQ  V I V +GER +   N  LGKF+L+ IPPAPRGVPQI V FDIDANGIL+VSA+DK  G++  I I    G LS+DEI++MV++AE
Sbjct:  341 GGQTRMPLVQKTVAEFF-GKEARKDVNPDEAVAVGAAIQGAVLAGD----VKDVLLLDVTPLTLGIETLGGVMTGLIEKNTTIPTKKSQVFSTADDNQGAVTIHVLQGERKQAAQNKSLGKFDLADIPPAPRGVPQIEVTFDIDANGILHVSAKDKATGKQQSIVIKASSG-LSEDEIQQMVRDAE 520          
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: DNAK_PSEAB (Chaperone protein dnaK OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=dnaK PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 6.099e-48
Identity = 106/186 (56.99%), Postives = 131/186 (70.43%), Query Frame = -1
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TR+P VQ+ + +FF GKE  K  NPDE          A+L+G+    V+D+LLLDVTP +LG+ET GGVMT LI +NTTIP KK QVFST  DNQ  V I V +GER +   N  LGKF+L+ IPPAPRGVPQI V FDIDANGIL+VSA+DK  G++  I I    G LS+DEI++MV++AE
Sbjct:  341 GGQTRMPLVQKTVAEFF-GKEARKDVNPDEAVAVGAAIQGAVLAGD----VKDVLLLDVTPLTLGIETLGGVMTGLIEKNTTIPTKKSQVFSTADDNQGAVTIHVLQGERKQAAQNKSLGKFDLADIPPAPRGVPQIEVTFDIDANGILHVSAKDKATGKQQSIVIKASSG-LSEDEIQQMVRDAE 520          
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: DNAK_PSEA8 (Chaperone protein dnaK OS=Pseudomonas aeruginosa (strain LESB58) GN=dnaK PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 6.099e-48
Identity = 106/186 (56.99%), Postives = 131/186 (70.43%), Query Frame = -1
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TR+P VQ+ + +FF GKE  K  NPDE          A+L+G+    V+D+LLLDVTP +LG+ET GGVMT LI +NTTIP KK QVFST  DNQ  V I V +GER +   N  LGKF+L+ IPPAPRGVPQI V FDIDANGIL+VSA+DK  G++  I I    G LS+DEI++MV++AE
Sbjct:  341 GGQTRMPLVQKTVAEFF-GKEARKDVNPDEAVAVGAAIQGAVLAGD----VKDVLLLDVTPLTLGIETLGGVMTGLIEKNTTIPTKKSQVFSTADDNQGAVTIHVLQGERKQAAQNKSLGKFDLADIPPAPRGVPQIEVTFDIDANGILHVSAKDKATGKQQSIVIKASSG-LSEDEIQQMVRDAE 520          
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: DNAK_PSEA7 (Chaperone protein dnaK OS=Pseudomonas aeruginosa (strain PA7) GN=dnaK PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 6.099e-48
Identity = 106/186 (56.99%), Postives = 131/186 (70.43%), Query Frame = -1
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TR+P VQ+ + +FF GKE  K  NPDE          A+L+G+    V+D+LLLDVTP +LG+ET GGVMT LI +NTTIP KK QVFST  DNQ  V I V +GER +   N  LGKF+L+ IPPAPRGVPQI V FDIDANGIL+VSA+DK  G++  I I    G LS+DEI++MV++AE
Sbjct:  341 GGQTRMPLVQKTVAEFF-GKEARKDVNPDEAVAVGAAIQGAVLAGD----VKDVLLLDVTPLTLGIETLGGVMTGLIEKNTTIPTKKSQVFSTADDNQGAVTIHVLQGERKQAAQNKSLGKFDLADIPPAPRGVPQIEVTFDIDANGILHVSAKDKATGKQQSIVIKASSG-LSEDEIQQMVRDAE 520          
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: DNAK_MARMS (Chaperone protein dnaK OS=Marinomonas sp. (strain MWYL1) GN=dnaK PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 6.099e-48
Identity = 106/186 (56.99%), Postives = 128/186 (68.82%), Query Frame = -1
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TR+P VQ  + +FF GKE  K  NPDE          A+LSG+    V+D+LLLDVTP SLG+ET GGVMT LI +NTTIP KK Q FST  DNQ  V I   +GER +   N  LG+F+L+ IPPAPRGVPQI V FDIDANGIL+VSA+DK  G++  I I +  G LS +E+EKMVQ+AE
Sbjct:  341 GGQTRMPLVQAKVTEFF-GKEPRKDVNPDEAVAIGASIQGAVLSGD----VKDVLLLDVTPLSLGIETMGGVMTTLIEKNTTIPTKKSQTFSTAEDNQNAVTIHALQGERKQASQNKSLGRFDLADIPPAPRGVPQIEVSFDIDANGILSVSAKDKATGKEQSIVIKSSSG-LSDEEVEKMVQDAE 520          
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: DNAK_HAEPS (Chaperone protein dnaK OS=Haemophilus parasuis serovar 5 (strain SH0165) GN=dnaK PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 6.099e-48
Identity = 107/186 (57.53%), Postives = 127/186 (68.28%), Query Frame = -1
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TR+P VQ+ + DFF GKE  K  NPDE           +L+G+    V D+LLLDVTP SLG+ET GGVMT LI +NTTIP KK QVFST  DNQ  V I V +GER R  DN  LG+F L GI PAPRG+PQI V FDIDANGI+NVSA+DK  G++ +I I    G LS  EIE+MV++AE
Sbjct:  340 GGQTRMPLVQKKVADFF-GKEPRKDVNPDEAVAIGAAVQGGVLAGD----VTDVLLLDVTPLSLGIETMGGVMTTLIEKNTTIPTKKSQVFSTAEDNQSAVTIHVLQGERKRASDNKSLGQFNLEGINPAPRGMPQIEVTFDIDANGIINVSAKDKNTGKEQQIKIQASSG-LSDAEIEQMVRDAE 519          
The following BLAST results are available for this feature:
BLAST of CB304793 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_EDWI94.669e-4856.99Chaperone protein dnaK OS=Edwardsiella ictaluri (s... [more]
DNAK_CAUCR4.669e-4855.38Chaperone protein dnaK OS=Caulobacter crescentus G... [more]
DNAK_WOLTR6.099e-4855.38Chaperone protein dnaK OS=Wolbachia sp. subsp. Bru... [more]
DNAK_TOLAT6.099e-4858.06Chaperone protein dnaK OS=Tolumonas auensis (strai... [more]
DNAK_PSEAE6.099e-4856.99Chaperone protein dnaK OS=Pseudomonas aeruginosa G... [more]
DNAK_PSEAB6.099e-4856.99Chaperone protein dnaK OS=Pseudomonas aeruginosa (... [more]
DNAK_PSEA86.099e-4856.99Chaperone protein dnaK OS=Pseudomonas aeruginosa (... [more]
DNAK_PSEA76.099e-4856.99Chaperone protein dnaK OS=Pseudomonas aeruginosa (... [more]
DNAK_MARMS6.099e-4856.99Chaperone protein dnaK OS=Marinomonas sp. (strain ... [more]
DNAK_HAEPS6.099e-4857.53Chaperone protein dnaK OS=Haemophilus parasuis ser... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IVaR_A03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_A03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304793 ID=CB304793; Name=CB304793; organism=Citrus sinensis; type=EST; length=585bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCGCCTCTTGAACCATCTTCT
CAATTTCATCCTTTGAAAGTCTTCCTTTGTCATTAGCGATGGTGATCTTG
TTCTTTTGACCAGGGGTCTTGTCCTCGGCAGACACATTCAGGATACCATT
GGCATCGATGTCGAAGCACACAGTGATTTGAGGAACACCCCTAGGAGCTG
GGGGAATACCAGAGAGCTCGAATTTACCCAACAAGTTATTGTCCCTGGTT
CTTGTCCTTTCACCTTCATAAACTTGGATCAACACACCAGGTTGGTTGTC
AAAGTAAGTTGAAAAAACCTGCTCCTTCTTGGGGGGAATGGTCGTGTTCC
TTGGAATCAACACAGTCATGACACCACCAGCAGTCTCCAAACCAAGGGAG
AAAGGCGTGACATCCAATAGCAAAAGATCCTGCACCTTCTCATTACCCTC
ACCACTCAAGATAGCAGCTTGCACAGCAGCACCATAGGCAACAGCCTCAT
CGGGGTTGGTGCTCTTGCAAAGCTCCTTCCCATTAAAGAAATCTTGCAAA
AGCTGCTGGACTTTGGGAATCCTAGTAAATCCTCC
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