CB304793

Overview
NameCB304793
Unique NameCB304793
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length585
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: DNAK_BURCH (Chaperone protein dnaK OS=Burkholderia cenocepacia (strain HI2424) GN=dnaK PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 1.774e-47
Identity = 102/186 (54.84%), Postives = 132/186 (70.97%), Query Frame = -1 
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TR+PKV + +++FF GK+  +  NPDE           +LSG+     +D+LLLDVTP SLG+ET GGVMT +I +NTTIP K  QV+ST  DNQ  V I+V++GER     N LLG+F L GIPPAPRGVPQI V FDIDANGIL+V A+DK  G++NKITI  + G LS+ EI++M+++AE
Sbjct:  342 GGQTRMPKVMEKVKEFF-GKDPRRDVNPDEAVAVGAAIQGQVLSGDR----KDVLLLDVTPLSLGIETLGGVMTKMINKNTTIPTKHAQVYSTADDNQGAVTIKVFQGEREMAAGNKLLGEFNLEGIPPAPRGVPQIEVTFDIDANGILHVGAKDKATGKENKITIKANSG-LSEAEIDQMIKDAE 521
[Close]
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: DNAK_BURCC (Chaperone protein dnaK OS=Burkholderia cenocepacia (strain MC0-3) GN=dnaK PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 1.774e-47
Identity = 102/186 (54.84%), Postives = 132/186 (70.97%), Query Frame = -1 
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TR+PKV + +++FF GK+  +  NPDE           +LSG+     +D+LLLDVTP SLG+ET GGVMT +I +NTTIP K  QV+ST  DNQ  V I+V++GER     N LLG+F L GIPPAPRGVPQI V FDIDANGIL+V A+DK  G++NKITI  + G LS+ EI++M+++AE
Sbjct:  342 GGQTRMPKVMEKVKEFF-GKDPRRDVNPDEAVAVGAAIQGQVLSGDR----KDVLLLDVTPLSLGIETLGGVMTKMINKNTTIPTKHAQVYSTADDNQGAVTIKVFQGEREMAAGNKLLGEFNLEGIPPAPRGVPQIEVTFDIDANGILHVGAKDKATGKENKITIKANSG-LSEAEIDQMIKDAE 521
[Close]
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: DNAK_BURCA (Chaperone protein dnaK OS=Burkholderia cenocepacia (strain AU 1054) GN=dnaK PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 1.774e-47
Identity = 102/186 (54.84%), Postives = 132/186 (70.97%), Query Frame = -1 
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TR+PKV + +++FF GK+  +  NPDE           +LSG+     +D+LLLDVTP SLG+ET GGVMT +I +NTTIP K  QV+ST  DNQ  V I+V++GER     N LLG+F L GIPPAPRGVPQI V FDIDANGIL+V A+DK  G++NKITI  + G LS+ EI++M+++AE
Sbjct:  342 GGQTRMPKVMEKVKEFF-GKDPRRDVNPDEAVAVGAAIQGQVLSGDR----KDVLLLDVTPLSLGIETLGGVMTKMINKNTTIPTKHAQVYSTADDNQGAVTIKVFQGEREMAAGNKLLGEFNLEGIPPAPRGVPQIEVTFDIDANGILHVGAKDKATGKENKITIKANSG-LSEAEIDQMIKDAE 521
[Close]
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: DNAK_AGRVS (Chaperone protein dnaK OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=dnaK PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 1.774e-47
Identity = 104/186 (55.91%), Postives = 130/186 (69.89%), Query Frame = -1 
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG +R+PKVQ++++  F GKE  K  NPDE           +L G+    V+D+LLLDVTP SLG+ET GGV T LI RNTTIP KK QVFST  DNQ  V I+V +GER   +DN LLG+F+L G+PP+PRGVPQI V FDIDANGI+ VSA+DK  G++ +I I    G LS  +IEKMV++AE
Sbjct:  336 GGMSRMPKVQEVVKQLF-GKEPHKGVNPDEVVAMGAAIQAGVLQGD----VKDVLLLDVTPLSLGIETLGGVFTRLIDRNTTIPTKKSQVFSTADDNQQAVTIRVSQGEREMAQDNKLLGQFDLVGLPPSPRGVPQIEVTFDIDANGIVQVSAKDKGTGKEQQIRI-QASGGLSDADIEKMVKDAE 515
[Close]
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: DNAK_VIBPA (Chaperone protein dnaK OS=Vibrio parahaemolyticus GN=dnaK PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 2.317e-47
Identity = 106/186 (56.99%), Postives = 127/186 (68.28%), Query Frame = -1 
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TR+P VQ  + +FF GKE  +  NPDE           +L+GE    V+D+LLLDVTP SLG+ET GGVMT L+ +NTTIP K  QVFST  DNQ  V I V +GER +   N  LG+F L GI PAPRG+PQI V FD+DA+GIL+VSA+DK  G++ KITI    G LS DEIEKMVQEAE
Sbjct:  340 GGQTRMPMVQAKVAEFF-GKEARRDVNPDEAVAMGAAVQGGVLAGE----VKDVLLLDVTPLSLGIETMGGVMTKLVEKNTTIPTKANQVFSTAEDNQSAVTIHVLQGERKQAMYNKSLGQFNLEGIQPAPRGMPQIEVTFDLDADGILHVSAKDKQTGKEQKITI-QASGGLSDDEIEKMVQEAE 519
[Close]
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: DNAK_STRGR (Chaperone protein dnaK OS=Streptomyces griseus GN=dnaK PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 2.317e-47
Identity = 98/186 (52.69%), Postives = 127/186 (68.28%), Query Frame = -1 
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TR+P V +L+++   G+E  K  NPDE           +L GE    V+D+LLLDVTP SLG+ET GG+MT LI RNTTIP K+ ++F+T  DNQP V IQVY+GER     N  LG FEL+G+PPAPRGVPQI V FDIDANGI++V+A+D   G++ K+T+      L KDE+ +M +EAE
Sbjct:  311 GGSTRMPAVAELVKELTGGQEANKGVNPDEVVAIGASLQAGVLKGE----VKDVLLLDVTPLSLGIETKGGIMTKLIERNTTIPTKRSEIFTTAEDNQPSVQIQVYQGEREIAAYNKKLGMFELTGLPPAPRGVPQIEVAFDIDANGIMHVAAKDLGTGKEQKMTVTGGSS-LPKDEVNRMREEAE 491
[Close]
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: DNAK_STRGG (Chaperone protein dnaK OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=dnaK PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 2.317e-47
Identity = 98/186 (52.69%), Postives = 127/186 (68.28%), Query Frame = -1 
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TR+P V +L+++   G+E  K  NPDE           +L GE    V+D+LLLDVTP SLG+ET GG+MT LI RNTTIP K+ ++F+T  DNQP V IQVY+GER     N  LG FEL+G+PPAPRGVPQI V FDIDANGI++V+A+D   G++ K+T+      L KDE+ +M +EAE
Sbjct:  311 GGSTRMPAVAELVKELTGGQEANKGVNPDEVVAIGASLQAGVLKGE----VKDVLLLDVTPLSLGIETKGGIMTKLIERNTTIPTKRSEIFTTAEDNQPSVQIQVYQGEREIAAYNKKLGMFELTGLPPAPRGVPQIEVAFDIDANGIMHVAAKDLGTGKEQKMTVTGGSS-LPKDEVNRMREEAE 491
[Close]
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: DNAK_PSESM (Chaperone protein dnaK OS=Pseudomonas syringae pv. tomato GN=dnaK PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 2.317e-47
Identity = 104/186 (55.91%), Postives = 132/186 (70.97%), Query Frame = -1 
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TR+P VQ+L+ +FF GKE  K  NPDE          A+L+G+    V+D+LLLDV+P +LG+ET GGVMT LI +NTTIP KK QVFST  DNQ  V I V +GER +   N  LGKF+L+ IPPAPRGVPQI V FDIDANGIL+V A+DK  G++  I I  + G LS++EI++MV++AE
Sbjct:  341 GGQTRMPLVQKLVTEFF-GKEARKDVNPDEAVAMGAAIQGAVLAGD----VKDVLLLDVSPLTLGIETMGGVMTALIEKNTTIPTKKSQVFSTADDNQNAVTIHVLQGERKQAGQNKSLGKFDLAEIPPAPRGVPQIEVTFDIDANGILHVGAKDKATGKQQSIVIKANSG-LSEEEIQQMVRDAE 520
[Close]
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: DNAK_PSEPK (Chaperone protein dnaK OS=Pseudomonas putida (strain KT2440) GN=dnaK PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 2.317e-47
Identity = 105/186 (56.45%), Postives = 129/186 (69.35%), Query Frame = -1 
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TR+P VQ+ + DFF GKE  K  NPDE          A+L+G+    V+D+LLLDV+P +LG+ET GGVMT LI +NTTIP KK QVFST  DNQ  V I V +GER +   N  LGKF+L+ IPPAPRGVPQI V FDIDANGIL+V A+DK  G+   I I  + G LS +EIE+MV++AE
Sbjct:  341 GGQTRMPLVQKEVADFF-GKEARKDVNPDEAVAMGAAIQGAVLAGD----VKDVLLLDVSPLTLGIETMGGVMTALIEKNTTIPTKKSQVFSTADDNQSAVTIHVLQGERKQAAQNKSLGKFDLADIPPAPRGVPQIEVTFDIDANGILHVGAKDKATGKTQSIVIKANSG-LSDEEIERMVRDAE 520
[Close]
BLAST of CB304793 vs. ExPASy Swiss-Prot
Match: DNAK_PSEP1 (Chaperone protein dnaK OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=dnaK PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 2.317e-47
Identity = 105/186 (56.45%), Postives = 129/186 (69.35%), Query Frame = -1 
Query:   28 GGFTRIPKVQQLLQDFFNGKELCKSTNPDEXXXXXXXXXXAILSGEGNEKVQDLLLLDVTPFSLGLETAGGVMTVLIPRNTTIPPKKEQVFSTYFDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTPGQKNKITIANDKGRLSKDEIEKMVQEAE 585
            GG TR+P VQ+ + DFF GKE  K  NPDE          A+L+G+    V+D+LLLDV+P +LG+ET GGVMT LI +NTTIP KK QVFST  DNQ  V I V +GER +   N  LGKF+L+ IPPAPRGVPQI V FDIDANGIL+V A+DK  G+   I I  + G LS +EIE+MV++AE
Sbjct:  341 GGQTRMPLVQKEVADFF-GKEARKDVNPDEAVAMGAAIQGAVLAGD----VKDVLLLDVSPLTLGIETMGGVMTALIEKNTTIPTKKSQVFSTADDNQSAVTIHVLQGERKQAAQNKSLGKFDLADIPPAPRGVPQIEVTFDIDANGILHVGAKDKATGKTQSIVIKANSG-LSDEEIERMVRDAE 520
The following BLAST results are available for this feature:
BLAST of CB304793 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_BURCH1.774e-4754.84Chaperone protein dnaK OS=Burkholderia cenocepacia... [more]
DNAK_BURCC1.774e-4754.84Chaperone protein dnaK OS=Burkholderia cenocepacia... [more]
DNAK_BURCA1.774e-4754.84Chaperone protein dnaK OS=Burkholderia cenocepacia... [more]
DNAK_AGRVS1.774e-4755.91Chaperone protein dnaK OS=Agrobacterium vitis (str... [more]
DNAK_VIBPA2.317e-4756.99Chaperone protein dnaK OS=Vibrio parahaemolyticus ... [more]
DNAK_STRGR2.317e-4752.69Chaperone protein dnaK OS=Streptomyces griseus GN=... [more]
DNAK_STRGG2.317e-4752.69Chaperone protein dnaK OS=Streptomyces griseus sub... [more]
DNAK_PSESM2.317e-4755.91Chaperone protein dnaK OS=Pseudomonas syringae pv.... [more]
DNAK_PSEPK2.317e-4756.45Chaperone protein dnaK OS=Pseudomonas putida (stra... [more]
DNAK_PSEP12.317e-4756.45Chaperone protein dnaK OS=Pseudomonas putida (stra... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IVaR_A03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_A03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304793 ID=CB304793; Name=CB304793; organism=Citrus sinensis; type=EST; length=585bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCGCCTCTTGAACCATCTTCT
CAATTTCATCCTTTGAAAGTCTTCCTTTGTCATTAGCGATGGTGATCTTG
TTCTTTTGACCAGGGGTCTTGTCCTCGGCAGACACATTCAGGATACCATT
GGCATCGATGTCGAAGCACACAGTGATTTGAGGAACACCCCTAGGAGCTG
GGGGAATACCAGAGAGCTCGAATTTACCCAACAAGTTATTGTCCCTGGTT
CTTGTCCTTTCACCTTCATAAACTTGGATCAACACACCAGGTTGGTTGTC
AAAGTAAGTTGAAAAAACCTGCTCCTTCTTGGGGGGAATGGTCGTGTTCC
TTGGAATCAACACAGTCATGACACCACCAGCAGTCTCCAAACCAAGGGAG
AAAGGCGTGACATCCAATAGCAAAAGATCCTGCACCTTCTCATTACCCTC
ACCACTCAAGATAGCAGCTTGCACAGCAGCACCATAGGCAACAGCCTCAT
CGGGGTTGGTGCTCTTGCAAAGCTCCTTCCCATTAAAGAAATCTTGCAAA
AGCTGCTGGACTTTGGGAATCCTAGTAAATCCTCC
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