CB304801

Overview
NameCB304801
Unique NameCB304801
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length699
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig738 contig Csv1_Contig738:87..793. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304801 vs. ExPASy Swiss-Prot
Match: ACAD9_MOUSE (Acyl-CoA dehydrogenase family member 9, mitochondrial OS=Mus musculus GN=Acad9 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.055e-21
Identity = 67/175 (38.29%), Postives = 98/175 (56.00%), Query Frame = -3
Query:  194 GSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACIDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDP---KDC----AGVILCAAERATQVALQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMII 697
            GS+TCE+ FEN  VP ENVLG+ G G  V M+ L+  R  + +   G+++  I++   Y   R+QF R L EF  IQ K      AL + ++YV        +G +D     DC    A V + ++E A Q   +A+Q LGG+GY+ +Y   R+LRDA++  I  GT+EI R+ I
Sbjct:  271 GSNTCEVHFENTRVPVENVLGEVGGGFKVAMNILNSGRFSMGSAVAGMLKKLIELTAEYACTRKQFNRNLSEFGLIQEK-----FALMAQKAYVMESMAYLTSGMLDQPGFPDCSIEAAMVKVFSSEAAWQCVSEALQILGGSGYMKDYPYERMLRDARILLIFEGTNEILRLFI 440          
BLAST of CB304801 vs. ExPASy Swiss-Prot
Match: YDIO_ECOLI (Uncharacterized protein ydiO OS=Escherichia coli (strain K12) GN=ydiO PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.008e-21
Identity = 60/171 (35.09%), Postives = 85/171 (49.71%), Query Frame = -3
Query:  176 TCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACIDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVALQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRKLLK 688
            TCE+  +N  V   +++G+EG G   +M   ++ERL+ AA   G  +   +    Y  QR  FG+P+G  Q IQ K A M   + + R+ V  VA   D  +      A   L  A  A +V   AIQ +GG GY +E    R  RD +   IG GT EI   + GR++LK
Sbjct:  208 TCEVYLDNVEVEESDMVGEEGMGFLNVMYNFEMERLINAARSTGFAECAFEDAARYANQRIAFGKPIGHNQMIQEKLALMAIKIDNMRNMVLKVAWQADQHQSLRTSAALAKLYCARTAMEVIDDAIQIMGGLGYTDEARVSRFWRDVRCERIGGGTDEIMIYVAGRQILK 378          
BLAST of CB304801 vs. ExPASy Swiss-Prot
Match: YDIO_ECOL6 (Uncharacterized protein ydiO OS=Escherichia coli O6 GN=ydiO PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.008e-21
Identity = 60/171 (35.09%), Postives = 85/171 (49.71%), Query Frame = -3
Query:  176 TCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACIDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVALQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRKLLK 688
            TCE+  +N  V   +++G+EG G   +M   ++ERL+ AA   G  +   +    Y  QR  FG+P+G  Q IQ K A M   + + R+ V  VA   D  +      A   L  A  A +V   AIQ +GG GY +E    R  RD +   IG GT EI   + GR++LK
Sbjct:  208 TCEVYLDNVEVEESDMVGEEGMGFLNVMYNFEMERLINAARSTGFAECAFEDAARYANQRIAFGKPIGHNQMIQEKLALMAIKIDNMRNMVLKVAWQADQHQSLRTSAALAKLYCARTAMEVIDDAIQIMGGLGYTDEARVSRFWRDVRCERIGGGTDEIMIYVAGRQILK 378          
BLAST of CB304801 vs. ExPASy Swiss-Prot
Match: YDIO_ECO57 (Uncharacterized protein ydiO OS=Escherichia coli O157:H7 GN=ydiO PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.008e-21
Identity = 60/171 (35.09%), Postives = 85/171 (49.71%), Query Frame = -3
Query:  176 TCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACIDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVALQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRKLLK 688
            TCE+  +N  V   +++G+EG G   +M   ++ERL+ AA   G  +   +    Y  QR  FG+P+G  Q IQ K A M   + + R+ V  VA   D  +      A   L  A  A +V   AIQ +GG GY +E    R  RD +   IG GT EI   + GR++LK
Sbjct:  208 TCEVYLDNVEVEESDMVGEEGMGFLNVMYNFEMERLINAARSTGFAECAFEDAARYANQRIAFGKPIGHNQMIQEKLALMAIKIDNMRNMVLKVAWQADQHQSLRTSAALAKLYCARTAMEVIDDAIQIMGGLGYTDEARVSRFWRDVRCERIGGGTDEIMIYVAGRQILK 378          
BLAST of CB304801 vs. ExPASy Swiss-Prot
Match: ACAD8_HUMAN (Isobutyryl-CoA dehydrogenase, mitochondrial OS=Homo sapiens GN=ACAD8 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.008e-21
Identity = 57/173 (32.95%), Postives = 99/173 (57.23%), Query Frame = -3
Query:  173 TCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACIDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKD-CAGVILCAAERATQVALQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRKLLKQ 688
            T  ++FE+C VP  N +G EG+G  + + GL+  R+ +A+  LG   A + +   ++  R+QFG PL   Q++Q   ADM T L ++R  V + A      + D    C+   L A +    +  QA+Q  GG GY+ +YA  + +RD+++++I  G++E+ R++I R LL++
Sbjct:  243 TRAVIFEDCAVPVANRIGSEGQGFLIAVRGLNGGRINIASCSLGAAHASVILTRDHLNVRKQFGEPLASNQYLQFTLADMATRLVAARLMVRNAAVALQEERKDAVALCSMAKLFATDECFAICNQALQMHGGYGYLKDYAVQQYVRDSRVHQILEGSNEVMRILISRSLLQE 415          
BLAST of CB304801 vs. ExPASy Swiss-Prot
Match: CAIA_PROSL (Crotonobetainyl-CoA dehydrogenase OS=Proteus sp. (strain LE138) GN=caiA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.836e-21
Identity = 57/171 (33.33%), Postives = 84/171 (49.12%), Query Frame = -3
Query:  173 CELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACIDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVALQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRKLLKQ 685
            CE+ F+N  +  +++ G+EG G   +    D ER ++A    G      +    Y  QR QFG  +G FQ IQ K A M   L S R+ +Y  A   DNG +   D A      A  A +V   A+Q LGG G   E+   R  RD ++  +  G+ E++ + +GR +LKQ
Sbjct:  208 CEITFDNVELEEKDMFGREGNGFNRVKEEFDHERFLVALTNYGTAMCAFEDAARYANQRVQFGETIGRFQLIQEKFAHMAIKLNSMRNMLYETAWKSDNGLITSGDAAMCKYFCANAAFEVVDSAMQVLGGVGIAGEHRIARFWRDLRVDRVSGGSDEMQILTLGRAVLKQ 378          
BLAST of CB304801 vs. ExPASy Swiss-Prot
Match: CAIA_PROMH (Crotonobetainyl-CoA dehydrogenase OS=Proteus mirabilis (strain HI4320) GN=caiA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.836e-21
Identity = 57/171 (33.33%), Postives = 84/171 (49.12%), Query Frame = -3
Query:  173 CELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACIDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVALQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRKLLKQ 685
            CE+ F+N  +  +++ G+EG G   +    D ER ++A    G      +    Y  QR QFG  +G FQ IQ K A M   L S R+ +Y  A   DNG +   D A      A  A +V   A+Q LGG G   E+   R  RD ++  +  G+ E++ + +GR +LKQ
Sbjct:  208 CEITFDNVELEEKDMFGREGNGFNRVKEEFDHERFLVALTNYGTAMCAFEDAARYANQRVQFGETIGRFQLIQEKFAHMAIKLNSMRNMLYETAWKSDNGLITSGDAAMCKYFCANAAFEVVDSAMQVLGGVGIAGEHRIARFWRDLRVDRVSGGSDEMQILTLGRAVLKQ 378          
BLAST of CB304801 vs. ExPASy Swiss-Prot
Match: IVD_CAEEL (Probable acyl coa dehydrogenase 6 OS=Caenorhabditis elegans GN=acdh-6 PE=2 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.989e-20
Identity = 59/175 (33.71%), Postives = 94/175 (53.71%), Query Frame = -3
Query:  170 SDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACIDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVALQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRKLLKQQ 694
            SDT +L FE+  VP+  ++G+EG+G    M+  + ERLV  A  L  +Q CI+  + Y R+R  FG+ L + Q++Q + A++   L+++RS +Y        G+      A   L     A +V  Q +Q  GG GY+N+    R  RD +++ IGAG  E+   II +   K+Q
Sbjct:  230 SDTVQLFFEDVRVPSSYIIGEEGRGFAYQMNQFNDERLVTVAVGLLPLQKCINETIEYARERLIFGKTLLDQQYVQFRLAELEAELEATRSLLYRTVLARCQGEDVSMLTAMAKLKIGRLARKVTDQCLQIWGGAGYLNDNGISRAFRDFRIFSIGAGCDEVMMQIIHKTQSKRQ 404          
BLAST of CB304801 vs. ExPASy Swiss-Prot
Match: ACAD9_HUMAN (Acyl-CoA dehydrogenase family member 9, mitochondrial OS=Homo sapiens GN=ACAD9 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.558e-20
Identity = 64/175 (36.57%), Postives = 94/175 (53.71%), Query Frame = -3
Query:  194 GSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACIDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDP---KDC----AGVILCAAERATQVALQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMII 697
            GS+TCE+ FEN  +P EN+LG+ G G  V M+ L+  R  + +   G+++  I++   Y   R+QF + L EF  IQ K      AL + ++YV         G +D     DC    A V + ++E A Q   +A+Q LGG GY  +Y   R+LRD ++  I  GT+EI RM I
Sbjct:  267 GSNTCEVHFENTKIPVENILGEVGDGFKVAMNILNSGRFSMGSVVAGLLKRLIEMTAEYACTRKQFNKRLSEFGLIQEK-----FALMAQKAYVMESMTYLTAGMLDQPGFPDCSIEAAMVKVFSSEAAWQCVSEALQILGGLGYTRDYPYERILRDTRILLIFEGTNEILRMYI 436          
BLAST of CB304801 vs. ExPASy Swiss-Prot
Match: CAIA_SHIF8 (Crotonobetainyl-CoA dehydrogenase OS=Shigella flexneri serotype 5b (strain 8401) GN=caiA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.871e-20
Identity = 54/171 (31.58%), Postives = 83/171 (48.54%), Query Frame = -3
Query:  173 CELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACIDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVALQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRKLLKQ 685
            CE+ F++  +  +++ G+EG G   +    D ER ++A    G      +    Y  QR QFG  +G FQ IQ K A M   L S ++ +Y  A   DNG +   D A      A  A +V   A+Q LGG G    +   R  RD ++  +  G+ E++ + +GR +LKQ
Sbjct:  208 CEITFDDVELDEKDMFGREGNGFNSVKEEFDHERFLVALTNYGTAMCAFEDAARYANQRVQFGEAIGRFQLIQEKFAHMAIKLNSMKNMLYEAAWKADNGTITSGDAAMCKYFCANAAFEVVDSAMQVLGGVGIAGNHRISRFWRDLRVDRVSGGSDEMQILTLGRAVLKQ 378          
The following BLAST results are available for this feature:
BLAST of CB304801 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
ACAD9_MOUSE1.055e-2138.29Acyl-CoA dehydrogenase family member 9, mitochondr... [more]
YDIO_ECOLI4.008e-2135.09Uncharacterized protein ydiO OS=Escherichia coli (... [more]
YDIO_ECOL64.008e-2135.09Uncharacterized protein ydiO OS=Escherichia coli O... [more]
YDIO_ECO574.008e-2135.09Uncharacterized protein ydiO OS=Escherichia coli O... [more]
ACAD8_HUMAN4.008e-2132.95Isobutyryl-CoA dehydrogenase, mitochondrial OS=Hom... [more]
CAIA_PROSL6.836e-2133.33Crotonobetainyl-CoA dehydrogenase OS=Proteus sp. (... [more]
CAIA_PROMH6.836e-2133.33Crotonobetainyl-CoA dehydrogenase OS=Proteus mirab... [more]
IVD_CAEEL1.989e-2033.71Probable acyl coa dehydrogenase 6 OS=Caenorhabditi... [more]
ACAD9_HUMAN7.558e-2036.57Acyl-CoA dehydrogenase family member 9, mitochondr... [more]
CAIA_SHIF89.871e-2031.58Crotonobetainyl-CoA dehydrogenase OS=Shigella flex... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IVaR_B03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_B03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304801 ID=CB304801; Name=CB304801; organism=Citrus sinensis; type=EST; length=699bp
TTTTNNNTTTTTTTTTTTTTTTTTTTCTTTGTAAAGTTGATAAACCGGTA
AATTTTATAATTCAGCACTTGTTCGTGCGTTCCCTGTTTCAAACCAAGGG
AATTTCACAATTTAAAATGAATATAAAAAGTATGTGCAAGTGAGAATCCT
ACAAAACGGCCATCTCTCACTGTTGCTTTAAAAGCTTGCGACCTATAATC
ATTCTTCTTATCTCGCTGGTGCCTGCCCCAATTTCATATAGTTTGGCATC
TCGAAGGAGACGTCCAGTGGCATACTCATTTACATAACCATTACCACCTA
AACATTGAATAGCCTGCAAAGCAACTTGGGTGGCTCTTTCAGCTGCACAA
AGTATCACTCCAGCACAGTCCTTAGGGTCAACTTTTCCGTTGTCACAGTC
CCTGGCAACAGAATAAACATAGGACCTTGATGATTGTAAAGCAGTATACA
TGTCAGCAGTTTTTCCCTGGATAAACTGAAATTCCCCAAGTGGACGGCCA
AATTGCTCCCGCTGACGAACATAAGGAAGAACAACATCAATGCATGCCTG
CATAATACCCAGGGGCCCAGCTGCCAAAACAAGCCTCTCCAAATCTAGTC
CTGACATCATAACATAAACTCCTTTTCCTTCCTGCCCAAGAACATTCTCA
TTTGGAACAAAGCAATTCTCAAACACAAGCTCACATGTATCACTTCCTC
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