CB304806

Overview
NameCB304806
Unique NameCB304806
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length584
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2157 contig Csv1_Contig2157:6..589. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304806 vs. ExPASy Swiss-Prot
Match: CYT7_ORYSJ (Putative cysteine proteinase inhibitor 7 OS=Oryza sativa subsp. japonica GN=Os03g0210100 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.025e-11
Identity = 45/119 (37.82%), Postives = 68/119 (57.14%), Query Frame = -2
Query:  179 MNQRFCCLIVLFLSVVPLLAAGARKGALVGGWKPIEDPKEKHVMEIGQFAVTEYNNQ-SKSALKFESVEKGETQVVSGTNYRLIL-VVKDGPSTKKFEAVVWEK-PWEHFKSLPSFKPM 526
            M  R   L++  ++VV ++A      A VG W+P+ D  + HV E+G++AV E +   +   L FE V  GE QVV+G NYRL L     G    ++EAVV+E+ P  + + L SF+P+
Sbjct:    1 MTMRTSSLLLAAVAVVAIVAGAT--AATVGSWEPV-DINDPHVQELGRWAVAEEDRGVAAGGLTFERVTDGEKQVVAGVNYRLTLEASSSGAKDGRYEAVVYEQDPRSNARKLVSFEPI 116          
BLAST of CB304806 vs. ExPASy Swiss-Prot
Match: CYT2_ORYSJ (Cysteine proteinase inhibitor 2 OS=Oryza sativa subsp. japonica GN=Os05g0494200 PE=2 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 4.511e-11
Identity = 43/116 (37.07%), Postives = 66/116 (56.90%), Query Frame = -2
Query:  179 IVLFLSV---VPLLAAGAR--KGALVGGWKPIEDPKEKHV--MEIGQFAVTEYNNQSKSALKFESVEKGETQVVSGTNYRLILVVKD-GPSTKKFEAVVWEKPWEHFKSLPSFKPM 502
            + LF S     P +A  A+  +G  VGG       +E  +  +E+ +FAV E+N+++ + L+ E V K   QVV G  + L + VK+ G + K +EA VWE+ WE+FK L  FKP+
Sbjct:   31 VTLFFSTGRGSPAMAEEAQQPRGVKVGGIHDAPAGRENDLTTVELARFAVAEHNSKANAMLELERVVKVRQQVVGGFMHYLTVEVKEPGGANKLYEAKVWERAWENFKQLQDFKPL 146          
The following BLAST results are available for this feature:
BLAST of CB304806 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
CYT7_ORYSJ2.025e-1137.82Putative cysteine proteinase inhibitor 7 OS=Oryza ... [more]
CYT2_ORYSJ4.511e-1137.07Cysteine proteinase inhibitor 2 OS=Oryza sativa su... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IVaR_C01 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_C01 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304806 ID=CB304806; Name=CB304806; organism=Citrus sinensis; type=EST; length=584bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAAAAGAAAATGGAAAATC
GAAATCTGAAAGACTCACCTTTGACATTCATAAACAATATAATAATATCA
TCACTCACATAACGAAAACCTTAATAATTATCAATCTGAGATTACATGCA
TTGTTATTTGTTAAACACCCTATTTAACCATAGGCTTAAACGAGGGGAGA
CTCTTGAAATGCTCCCATGGCTTCTCCCAAACGACAGCTTCAAATTTCTT
GGTCGAAGGGCCGTCCTTGACGACCAAGATCAGCCGGTAATTGGTGCCGG
AAACCACCTGAGTCTCGCCCTTCTCCACGCTCTCGAACTTCAACGCGCTC
TTTGACTGGTTGTTGTACTCCGTCACCGCGAACTGCCCGATCTCCATCAC
GTGCTTCTCCTTGGGGTCCTCTATCGGCTTCCATCCCCCAACCAACGCTC
CTTTACGGGCGCCGGCGGCCAGGAGAGGGACCACGGAGAGAAAGAGAACA
ATAAGACAGCAAAAACGTTGATTCATTTTCGTTGTTTTGGTAACCGTTCA
CACCAAAGTCCGTGACTTCCGGTTCTTGAGTCCC
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