CB304823

Overview
NameCB304823
Unique NameCB304823
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length632
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304823_ssr154 microsatellite CB304823_ssr154:154..165. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2668 contig Csv1_Contig2668:152..783. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304823 vs. ExPASy Swiss-Prot
Match: NLTP_CICAR (Non-specific lipid-transfer protein OS=Cicer arietinum PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 9.956e-26
Identity = 57/94 (60.64%), Postives = 71/94 (75.53%), Query Frame = -2
Query:  218 NAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 499
            +AITCG+V  +LAPC+ +L+ GG  P   CC GVR+LN AA TTPDRQAACNCLK A  SI  +NAN AA LP +C V+IPYKIS +T+C+ +R
Sbjct:   23 SAITCGRVDTALAPCLGYLQ-GGPGPSAQCCGGVRNLNSAAVTTPDRQAACNCLKSAAGSISRLNANNAAALPGKCVVNIPYKISTSTNCATIR 115          
BLAST of CB304823 vs. ExPASy Swiss-Prot
Match: NLTP_GERHY (Non-specific lipid-transfer protein OS=Gerbera hybrida PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.698e-25
Identity = 54/93 (58.06%), Postives = 64/93 (68.82%), Query Frame = -2
Query:  221 NAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 499
            +AI+CGQVT  L PC  +L  GG  PP  CCNGVR LN AA+TTPDRQ AC CLK    +   IN N A  LP +CG+SI YKI+PN DCS++
Sbjct:   24 DAISCGQVTSGLVPCFGYLAAGGPVPPA-CCNGVRGLNNAAKTTPDRQTACGCLKGILAANTRINLNNANSLPGKCGISIGYKITPNIDCSKI 115          
BLAST of CB304823 vs. ExPASy Swiss-Prot
Match: NLTP3_ARATH (Non-specific lipid-transfer protein 3 OS=Arabidopsis thaliana GN=LTP3 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.698e-25
Identity = 52/96 (54.17%), Postives = 70/96 (72.92%), Query Frame = -2
Query:  218 VTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 505
            V  AI+CG V GSLAPC  +L  GG   PP CC GV++LN  A+TTPDRQ AC C++   +SI G+N ++A+GLP +CGVSIPY IS +T+C+ ++
Sbjct:   21 VDAAISCGTVAGSLAPCATYLSKGG-LVPPSCCAGVKTLNSMAKTTPDRQQACRCIQSTAKSISGLNPSLASGLPGKCGVSIPYPISMSTNCNNIK 115          
BLAST of CB304823 vs. ExPASy Swiss-Prot
Match: NLTP3_PRUDU (Non-specific lipid-transfer protein 3 OS=Prunus dulcis PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.218e-25
Identity = 55/95 (57.89%), Postives = 68/95 (71.58%), Query Frame = -2
Query:  218 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINAN--VAAGLPRQCGVSIPYKISPNTDCSRVR 496
            A++CGQV  +L PCI ++  GG   P  CC GVRSL   A+TT DRQ+ CNCLKQA   IP  NAN  +AAGLP +CGV+IPYKISP+TDC  ++
Sbjct:   30 AVSCGQVVNNLTPCINYVANGGALNPS-CCTGVRSLYSLAQTTADRQSICNCLKQAVNGIPYTNANAGLAAGLPGKCGVNIPYKISPSTDCKSIK 123          
BLAST of CB304823 vs. ExPASy Swiss-Prot
Match: NLTP1_SOLLC (Non-specific lipid-transfer protein 1 OS=Solanum lycopersicum GN=TSW12 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.218e-25
Identity = 55/97 (56.70%), Postives = 70/97 (72.16%), Query Frame = -2
Query:  218 PVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 508
            P   A+TCGQVT  LAPC+ +L+  GR P   CC GV++L G+A+TT DR+ AC CLK A  +I GI+ N AAG+P  C V+IPYKISP+TDCS V+
Sbjct:   20 PHAEALTCGQVTAGLAPCLPYLQ--GRGPLGGCCGGVKNLLGSAKTTADRKTACTCLKSAANAIKGIDLNKAAGIPSVCKVNIPYKISPSTDCSTVQ 114          
BLAST of CB304823 vs. ExPASy Swiss-Prot
Match: NLTP2_ORYSI (Non-specific lipid-transfer protein 2 OS=Oryza sativa subsp. indica GN=LTP2-A PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.897e-25
Identity = 54/92 (58.70%), Postives = 67/92 (72.83%), Query Frame = -2
Query:  221 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 496
            AI+CGQV  +++PC+++ R GG  P   CC+GVRSLN AA TT DR+ ACNCLK    SI G+NA  AA +P +CGVSIPY ISP+ DCS V
Sbjct:   27 AISCGQVNSAVSPCLSYAR-GGSGPSAACCSGVRSLNSAASTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 117          
BLAST of CB304823 vs. ExPASy Swiss-Prot
Match: NLTP1_SOLPN (Non-specific lipid-transfer protein 1 OS=Solanum pennellii GN=LTP1 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.897e-25
Identity = 55/97 (56.70%), Postives = 69/97 (71.13%), Query Frame = -2
Query:  218 PVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 508
            P   A+TCGQVT  LAPC+ +L+  GR P   CC GV+ L G+A+TT DR+ AC CLK A  +I GI+ N AAG+P  C V+IPYKISP+TDCS V+
Sbjct:   20 PHAEALTCGQVTAGLAPCLPYLQ--GRGPLGGCCGGVKGLLGSAKTTADRKTACTCLKSAANAIKGIDLNKAAGIPSVCKVNIPYKISPSTDCSTVQ 114          
BLAST of CB304823 vs. ExPASy Swiss-Prot
Match: NLTP1_ORYSJ (Non-specific lipid-transfer protein 1 OS=Oryza sativa subsp. japonica GN=LTP PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.897e-25
Identity = 54/92 (58.70%), Postives = 65/92 (70.65%), Query Frame = -2
Query:  221 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 496
            AITCGQV  ++ PC+ + R GG  P   CC+GVRSL  AA TT DR+ ACNCLK A R I G+NA  AA +P +CGVS+PY IS + DCSRV
Sbjct:   25 AITCGQVNSAVGPCLTYAR-GGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIKGLNAGNAASIPSKCGVSVPYTISASIDCSRV 115          
BLAST of CB304823 vs. ExPASy Swiss-Prot
Match: NLTP1_ORYSI (Non-specific lipid-transfer protein 1 OS=Oryza sativa subsp. indica GN=LTP PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.897e-25
Identity = 54/92 (58.70%), Postives = 65/92 (70.65%), Query Frame = -2
Query:  221 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 496
            AITCGQV  ++ PC+ + R GG  P   CC+GVRSL  AA TT DR+ ACNCLK A R I G+NA  AA +P +CGVS+PY IS + DCSRV
Sbjct:   25 AITCGQVNSAVGPCLTYAR-GGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIKGLNAGNAASIPSKCGVSVPYTISASIDCSRV 115          
BLAST of CB304823 vs. ExPASy Swiss-Prot
Match: NLT2B_ORYSJ (Non-specific lipid-transfer protein 2B OS=Oryza sativa subsp. japonica GN=LTP2-B PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.897e-25
Identity = 54/92 (58.70%), Postives = 67/92 (72.83%), Query Frame = -2
Query:  221 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 496
            AI+CGQV  +++PC+++ R GG  P   CC+GVRSLN AA TT DR+ ACNCLK    SI G+NA  AA +P +CGVSIPY ISP+ DCS V
Sbjct:   26 AISCGQVNSAVSPCLSYAR-GGSGPSAACCSGVRSLNSAATTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 116          
The following BLAST results are available for this feature:
BLAST of CB304823 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
NLTP_CICAR9.956e-2660.64Non-specific lipid-transfer protein OS=Cicer ariet... [more]
NLTP_GERHY1.698e-2558.06Non-specific lipid-transfer protein OS=Gerbera hyb... [more]
NLTP3_ARATH1.698e-2554.17Non-specific lipid-transfer protein 3 OS=Arabidops... [more]
NLTP3_PRUDU2.218e-2557.89Non-specific lipid-transfer protein 3 OS=Prunus du... [more]
NLTP1_SOLLC2.218e-2556.70Non-specific lipid-transfer protein 1 OS=Solanum l... [more]
NLTP2_ORYSI2.897e-2558.70Non-specific lipid-transfer protein 2 OS=Oryza sat... [more]
NLTP1_SOLPN2.897e-2556.70Non-specific lipid-transfer protein 1 OS=Solanum p... [more]
NLTP1_ORYSJ2.897e-2558.70Non-specific lipid-transfer protein 1 OS=Oryza sat... [more]
NLTP1_ORYSI2.897e-2558.70Non-specific lipid-transfer protein 1 OS=Oryza sat... [more]
NLT2B_ORYSJ2.897e-2558.70Non-specific lipid-transfer protein 2B OS=Oryza sa... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IVaR_E06 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_E06 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304823 ID=CB304823; Name=CB304823; organism=Citrus sinensis; type=EST; length=632bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTCAAAACACAGATCACGTTT
ACATATTTAATATGATATTAAAAGCAAAGATACAAACATGACATGAGAGT
GAGACTCACACAAGTGGAGACTCGTTCGGACAAAGAAATTAACATATATA
TTCTTTATTTATTTATTCTTCTCAGTCAATCATACTTGGAAAGTCACAGA
GCTCAAACTCAACTTCACCTGACCCTAGAGCAGTCAGTGTTGGGGCTGAT
CTTGTAAGGAATGCTGACTCCACATTGACGAGGAAGGCCAGCGGCAACAT
TAGCGTTGATGCCGGGGATTGATCGGTAAGCTTGCTTCAAGCAGTTGCAT
GCAGCTTGGCGGTCAGGGGTGGTTCTGGCGGCGCCGTTGAGAGACCTGAC
GCCGTTACAGCATGGGGGTGGAGGAAAACGCCCTCCAGTTCTCAAGAAAG
CGATGCATGGAGCCAAGGAGCCTGTCACCTGCCCACATGTTATGGCATTA
GTCACTGGGGCAGTCACCAGAATGCACAAAAGCAAAGCACAAACAAGCTT
AAGAGCAGCCATGAGGATTTTTCAGGGAGGCTTTTGCTTGGTTATAGCTA
GTTATCAGGTTCTGTTTACAAGCTTGAGTCCC
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