CB304823

Overview
NameCB304823
Unique NameCB304823
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length632
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304823 vs. ExPASy Swiss-Prot
Match: NLT2A_ORYSJ (Non-specific lipid-transfer protein 2A OS=Oryza sativa subsp. japonica GN=LTP2-A PE=3 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 2.897e-25
Identity = 54/92 (58.70%), Postives = 67/92 (72.83%), Query Frame = -2
Query:  221 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 496
            AI+CGQV  +++PC+++ R GG  P   CC+GVRSLN AA TT DR+ ACNCLK    SI G+NA  AA +P +CGVSIPY ISP+ DCS V
Sbjct:   27 AISCGQVNSAVSPCLSYAR-GGSGPSAACCSGVRSLNSAASTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 117          
BLAST of CB304823 vs. ExPASy Swiss-Prot
Match: NLTP_BETVU (Non-specific lipid-transfer protein OS=Beta vulgaris GN=IWF1' PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.783e-25
Identity = 54/96 (56.25%), Postives = 65/96 (67.71%), Query Frame = -2
Query:  221 PVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 508
            P+  AITCG V   LAPCI +L+ G   P   CC G++SLN AA +  DR+ AC CLK A  SI GIN   AA LPRQCGVS+PY ISPNT+C+ +
Sbjct:   22 PLAEAITCGLVASKLAPCIGYLQ-GAPGPSAACCGGIKSLNSAAASPADRKTACTCLKSAATSIKGINYGKAASLPRQCGVSVPYAISPNTNCNAI 116          
BLAST of CB304823 vs. ExPASy Swiss-Prot
Match: NLTP4_ARATH (Non-specific lipid-transfer protein 4 OS=Arabidopsis thaliana GN=LTP4 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.453e-25
Identity = 53/96 (55.21%), Postives = 70/96 (72.92%), Query Frame = -2
Query:  218 VTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 505
            V  AITCG V  SL+PC+ +L  GG   PPPCC GV+ LNG A+TTPDRQ AC CL+ A +   G+N ++A+GLP +CGVSIPY IS +T+C+ ++
Sbjct:   21 VDAAITCGTVASSLSPCLGYLSKGG-VVPPPCCAGVKKLNGMAQTTPDRQQACRCLQSAAK---GVNPSLASGLPGKCGVSIPYPISTSTNCATIK 112          
BLAST of CB304823 vs. ExPASy Swiss-Prot
Match: SCA_LILLO (Stigma/stylar cysteine-rich adhesin OS=Lilium longiflorum GN=SCA PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.101e-24
Identity = 52/94 (55.32%), Postives = 64/94 (68.09%), Query Frame = -2
Query:  218 NAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 499
            +AITCGQV   L  C+ + R GG  PP  CC GVR+LN  A+TTPDRQ ACNCLK       G+NA + AG+P +CGV+IPY I   TDC++VR
Sbjct:   21 SAITCGQVDSDLTSCLGYARKGGVIPPG-CCAGVRTLNNLAKTTPDRQTACNCLKSLVNPSLGLNAAIVAGIPGKCGVNIPYPIRMQTDCNKVR 113          
BLAST of CB304823 vs. ExPASy Swiss-Prot
Match: NLTP4_ORYSJ (Non-specific lipid-transfer protein 4 OS=Oryza sativa subsp. japonica GN=Os12g0114500 PE=3 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 1.878e-24
Identity = 51/96 (53.12%), Postives = 65/96 (67.71%), Query Frame = -2
Query:  221 PVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 508
            P  +A+TCGQV   LAPCI +       P   CC+GVR+LN AA TT DRQ  C CLKQ   ++ G+  ++ AG+P +CGV+IPY ISP+TDCSRV
Sbjct:   23 PAASAVTCGQVVSMLAPCIMYATGRVSAPTGGCCDGVRTLNSAAATTADRQTTCACLKQQTSAMGGLRPDLVAGIPSKCGVNIPYAISPSTDCSRV 118          
BLAST of CB304823 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLLC (Non-specific lipid-transfer protein 2 OS=Solanum lycopersicum GN=LE16 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.878e-24
Identity = 54/97 (55.67%), Postives = 67/97 (69.07%), Query Frame = -2
Query:  218 PVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 508
            P   +++CG+VT  LAPC+ +L   GR P   CC GV+ L GAA+T  DR+ AC CLK A  SI GI+   AAGLP  CGV+IPYKISP+TDCS V+
Sbjct:   20 PHAESLSCGEVTSGLAPCLPYLE--GRGPLGGCCGGVKGLLGAAKTPEDRKTACTCLKSAANSIKGIDTGKAAGLPGVCGVNIPYKISPSTDCSTVQ 114          
BLAST of CB304823 vs. ExPASy Swiss-Prot
Match: NLTP1_ARATH (Non-specific lipid-transfer protein 1 OS=Arabidopsis thaliana GN=LTP1 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.452e-24
Identity = 53/100 (53.00%), Postives = 74/100 (74.00%), Query Frame = -2
Query:  218 PVTN--AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSI-PGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 508
            P+T+  A++CG V  +LA CI ++  GG  PP  CC+GV++LN  A+TTPDRQ ACNC++ A R++  G+NA  AAG+P+ CGV+IPYKIS +T+C  VR
Sbjct:   20 PITSNAALSCGSVNSNLAACIGYVLQGGVIPPA-CCSGVKNLNSIAKTTPDRQQACNCIQGAARALGSGLNAGRAAGIPKACGVNIPYKISTSTNCKTVR 118          
BLAST of CB304823 vs. ExPASy Swiss-Prot
Match: NLT41_HORVU (Non-specific lipid-transfer protein 4.1 OS=Hordeum vulgare GN=LTP4.1 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.452e-24
Identity = 50/93 (53.76%), Postives = 68/93 (73.12%), Query Frame = -2
Query:  218 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 496
            AI+CGQV+ +L+PCI++ R  G  PP  CC+GV+ L GAA++T D+QAAC C+K A     G+NA  AAG+P  CGVS+PY IS + DCS++R
Sbjct:   26 AISCGQVSSALSPCISYARGNGAKPPAACCSGVKRLAGAAQSTADKQAACKCIKSA---AGGLNAGKAAGIPSMCGVSVPYAISASVDCSKIR 115          
BLAST of CB304823 vs. ExPASy Swiss-Prot
Match: NLTPD_BRAOT (Non-specific lipid-transfer protein D OS=Brassica oleracea var. italica GN=WAX9D PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.203e-24
Identity = 53/99 (53.54%), Postives = 68/99 (68.69%), Query Frame = -2
Query:  218 PVTN--AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 508
            P+T+  A++CG V+G +APCI +L       P  CC+GV SLN  ARTTPDRQ AC CL  A  ++P IN   AAGLP+ CGV+IPYKIS  T+C+ V+
Sbjct:   20 PITSNAALSCGTVSGYVAPCIGYLAQNAPAVPTACCSGVTSLNNMARTTPDRQQACRCLVGAANALPTINVARAAGLPKACGVNIPYKISKTTNCNSVK 118          
BLAST of CB304823 vs. ExPASy Swiss-Prot
Match: NLTP3_HORVU (Non-specific lipid-transfer protein 3 OS=Hordeum vulgare GN=LTP3 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.203e-24
Identity = 49/92 (53.26%), Postives = 68/92 (73.91%), Query Frame = -2
Query:  221 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 496
            AI+CGQV+ +L+PCI++ R  G  PP  CC+GV+ L GAA++T D+QAAC CLK    SI GIN    +G+P +CGVS+P+ IS +TDC++V
Sbjct:   26 AISCGQVSSALSPCISYARGNGAKPPVACCSGVKRLAGAAQSTADKQAACRCLKSLATSIKGINMGKVSGVPGKCGVSVPFPISMSTDCNKV 117          
The following BLAST results are available for this feature:
BLAST of CB304823 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
NLT2A_ORYSJ2.897e-2558.70Non-specific lipid-transfer protein 2A OS=Oryza sa... [more]
NLTP_BETVU3.783e-2556.25Non-specific lipid-transfer protein OS=Beta vulgar... [more]
NLTP4_ARATH6.453e-2555.21Non-specific lipid-transfer protein 4 OS=Arabidops... [more]
SCA_LILLO1.101e-2455.32Stigma/stylar cysteine-rich adhesin OS=Lilium long... [more]
NLTP4_ORYSJ1.878e-2453.13Non-specific lipid-transfer protein 4 OS=Oryza sat... [more]
NLTP2_SOLLC1.878e-2455.67Non-specific lipid-transfer protein 2 OS=Solanum l... [more]
NLTP1_ARATH2.452e-2453.00Non-specific lipid-transfer protein 1 OS=Arabidops... [more]
NLT41_HORVU2.452e-2453.76Non-specific lipid-transfer protein 4.1 OS=Hordeum... [more]
NLTPD_BRAOT3.203e-2453.54Non-specific lipid-transfer protein D OS=Brassica ... [more]
NLTP3_HORVU3.203e-2453.26Non-specific lipid-transfer protein 3 OS=Hordeum v... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IVaR_E06 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_E06 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304823 ID=CB304823; Name=CB304823; organism=Citrus sinensis; type=EST; length=632bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTCAAAACACAGATCACGTTT
ACATATTTAATATGATATTAAAAGCAAAGATACAAACATGACATGAGAGT
GAGACTCACACAAGTGGAGACTCGTTCGGACAAAGAAATTAACATATATA
TTCTTTATTTATTTATTCTTCTCAGTCAATCATACTTGGAAAGTCACAGA
GCTCAAACTCAACTTCACCTGACCCTAGAGCAGTCAGTGTTGGGGCTGAT
CTTGTAAGGAATGCTGACTCCACATTGACGAGGAAGGCCAGCGGCAACAT
TAGCGTTGATGCCGGGGATTGATCGGTAAGCTTGCTTCAAGCAGTTGCAT
GCAGCTTGGCGGTCAGGGGTGGTTCTGGCGGCGCCGTTGAGAGACCTGAC
GCCGTTACAGCATGGGGGTGGAGGAAAACGCCCTCCAGTTCTCAAGAAAG
CGATGCATGGAGCCAAGGAGCCTGTCACCTGCCCACATGTTATGGCATTA
GTCACTGGGGCAGTCACCAGAATGCACAAAAGCAAAGCACAAACAAGCTT
AAGAGCAGCCATGAGGATTTTTCAGGGAGGCTTTTGCTTGGTTATAGCTA
GTTATCAGGTTCTGTTTACAAGCTTGAGTCCC
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