CB304823

Overview
NameCB304823
Unique NameCB304823
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length632
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304823_ssr154 microsatellite CB304823_ssr154:154..165. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2668 contig Csv1_Contig2668:152..783. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304823 vs. ExPASy Swiss-Prot
Match: NLTP3_BRANA (Non-specific lipid-transfer protein 3 OS=Brassica napus GN=LTP3 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.711e-23
Identity = 52/93 (55.91%), Postives = 65/93 (69.89%), Query Frame = -2
Query:  218 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 496
            A++CG V+G+LA CI +L   G  P   CC+GV SLN  ARTTPDRQ AC CL  A  ++P IN   AAGLP+ CGV+IPYKIS  T+C+ V+
Sbjct:   26 ALSCGTVSGNLAACIGYLTQNGPVPTA-CCSGVTSLNNMARTTPDRQQACRCLVGAANALPTINVARAAGLPKACGVNIPYKISKTTNCNSVK 117          
BLAST of CB304823 vs. ExPASy Swiss-Prot
Match: NLTP_ELECO (Non-specific lipid-transfer protein OS=Eleusine coracana PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.541e-23
Identity = 51/93 (54.84%), Postives = 66/93 (70.97%), Query Frame = -2
Query:  221 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNC-LKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 496
            AI+CGQV+ ++ PC+A+ R  G  P   C +GVRSLN AARTT DR+AACNC LK A   + G+NA  A+ +P +CGV +PY IS + DCSRV
Sbjct:    1 AISCGQVSSAIGPCLAYARGAGAAPSASCQSGVRSLNAAARTTADRRAACNCSLKSAASRVSGLNAGKASSIPGRCGVRLPYAISASIDCSRV 93          
BLAST of CB304823 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLCI (Non-specific lipid-transfer protein 2 OS=Solanum chilense PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.541e-23
Identity = 53/97 (54.64%), Postives = 65/97 (67.01%), Query Frame = -2
Query:  218 PVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 508
            P   A+TCGQVT +LAPC+ +L   G  P   CC GV+ L G A+TT DRQAAC CLK A  S   ++   AA LP  C V+IPYKISP+TDCS+V+
Sbjct:   20 PHAEALTCGQVTSTLAPCLPYLMNRG--PLGGCCGGVKGLLGQAQTTVDRQAACACLKSAASSFTDLDLGKAASLPSTCNVNIPYKISPSTDCSKVQ 114          
BLAST of CB304823 vs. ExPASy Swiss-Prot
Match: NLTP1_BRANA (Non-specific lipid-transfer protein 1 OS=Brassica napus GN=LTP1 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.541e-23
Identity = 52/93 (55.91%), Postives = 65/93 (69.89%), Query Frame = -2
Query:  218 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 496
            A++CG V+G+LA CI +L   G  P   CC GV +LN  ARTTPDRQ AC CL  A  + P +NA  AAGLP+ CGV+IPYKIS +T+C+ VR
Sbjct:   26 ALSCGTVSGNLAACIGYLTQNGPLPRG-CCTGVTNLNNMARTTPDRQQACRCLVGAANAFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          
BLAST of CB304823 vs. ExPASy Swiss-Prot
Match: NLTP1_PHAAU (Non-specific lipid-transfer protein 1 OS=Phaseolus aureus PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.040e-23
Identity = 49/91 (53.85%), Postives = 67/91 (73.63%), Query Frame = -2
Query:  221 ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 493
            +TCGQV G+LA CI FL+ GG   PP CC GV+++  ++RTT DR+A C+CLK A  ++ GIN N A  LP +CGV+IPYKIS +T+C+ +
Sbjct:    1 MTCGQVQGNLAQCIGFLQKGG-VVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVRGINPNNAEALPGKCGVNIPYKISTSTNCNSI 90          
BLAST of CB304823 vs. ExPASy Swiss-Prot
Match: NLTP3_LENCU (Non-specific lipid-transfer protein 3 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.030e-22
Identity = 52/93 (55.91%), Postives = 64/93 (68.82%), Query Frame = -2
Query:  218 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 496
            A++CG VTG LAPCI +L TGG  P   CC GV+ L  AA TT DRQAACNCLK A  +I  +N   AA LP +C V+IPYKIS  T+C+ ++
Sbjct:   26 AVSCGTVTGDLAPCIPYL-TGGAGPTDSCCAGVKKLLAAAPTTADRQAACNCLKTAAGNINNLNPGNAAALPGKCNVNIPYKISTTTNCNTIK 117          
BLAST of CB304823 vs. ExPASy Swiss-Prot
Match: NLTP3_VITSX (Non-specific lipid-transfer protein P3 OS=Vitis sp. PE=1 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 2.998e-22
Identity = 48/91 (52.75%), Postives = 64/91 (70.33%), Query Frame = -2
Query:  221 ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 493
            ++CG V   +A CI +LR  G  P   CCNGV++L  +A TT DR+ AC CL  A ++I G+N  +AAGLP +CGVSIPYKISP+T+C +V
Sbjct:    1 LSCGDVATQMASCINYLRGAGPLPAA-CCNGVKNLKNSATTTQDRRTACKCLISASKTISGVNFGLAAGLPAKCGVSIPYKISPSTNCDQV 90          
BLAST of CB304823 vs. ExPASy Swiss-Prot
Match: NLTP7_ARATH (Non-specific lipid-transfer protein 7 OS=Arabidopsis thaliana GN=LTP7 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.943e-21
Identity = 49/94 (52.13%), Postives = 65/94 (69.15%), Query Frame = -2
Query:  227 AITCGQVTGSLAPCIAFLRTGG-RFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSI-PGINANVAAGLPRQCGVSIPY--KISPNTDCS 496
            A++CG+V  +L PC  +L  GG   P P CCNGVR LNG   TT DR+ AC C+K A R++ PG+NA+ AAG+PR+CG+ IPY  +I  NT C+
Sbjct:   26 ALSCGEVNSNLKPCTGYLTNGGITSPGPQCCNGVRKLNGMVLTTLDRRQACRCIKNAARNVGPGLNADRAAGIPRRCGIKIPYSTQIRFNTKCN 119          
BLAST of CB304823 vs. ExPASy Swiss-Prot
Match: NLTP6_GOSHI (Non-specific lipid-transfer protein 6 OS=Gossypium hirsutum GN=LTP6 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.329e-21
Identity = 51/94 (54.26%), Postives = 59/94 (62.77%), Query Frame = -2
Query:  218 AITCGQVTGSLAPCIAFLRTGGRFPPPP-CCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 496
            AI+  QV  SL PC+ ++R     P PP  C G+RSL  AAR   DRQAAC C+K     I  IN  VAAGLP QC V IPYKISP+ DC RV+
Sbjct:   27 AISYDQVKSSLLPCVGYVRGNNARPAPPNYCKGIRSLKSAARIRLDRQAACKCIKSLAADISDINYGVAAGLPGQCNVHIPYKISPSIDCKRVK 120          
BLAST of CB304823 vs. ExPASy Swiss-Prot
Match: NLTP8_HORVU (Non-specific lipid-transfer protein Cw18 OS=Hordeum vulgare GN=CW18 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.653e-21
Identity = 48/93 (51.61%), Postives = 63/93 (67.74%), Query Frame = -2
Query:  221 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPG-INANVAAGLPRQCGVSIPYKISPNTDCSRV 496
            AITCGQV+ +L PC A+ +  G  P   CC+GV+ L G AR+T D+QA C CLK    S+ G  NA  AAG+P +CGVS+PY IS + DCS++
Sbjct:   26 AITCGQVSSALGPCAAYAKGSGTSPSAGCCSGVKRLAGLARSTADKQATCRCLK----SVAGAYNAGRAAGIPSRCGVSVPYTISASVDCSKI 114          
The following BLAST results are available for this feature:
BLAST of CB304823 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
NLTP3_BRANA2.711e-2355.91Non-specific lipid-transfer protein 3 OS=Brassica ... [more]
NLTP_ELECO3.541e-2354.84Non-specific lipid-transfer protein OS=Eleusine co... [more]
NLTP2_SOLCI3.541e-2354.64Non-specific lipid-transfer protein 2 OS=Solanum c... [more]
NLTP1_BRANA3.541e-2355.91Non-specific lipid-transfer protein 1 OS=Brassica ... [more]
NLTP1_PHAAU6.040e-2353.85Non-specific lipid-transfer protein 1 OS=Phaseolus... [more]
NLTP3_LENCU1.030e-2255.91Non-specific lipid-transfer protein 3 OS=Lens culi... [more]
NLTP3_VITSX2.998e-2252.75Non-specific lipid-transfer protein P3 OS=Vitis sp... [more]
NLTP7_ARATH1.943e-2152.13Non-specific lipid-transfer protein 7 OS=Arabidops... [more]
NLTP6_GOSHI4.329e-2154.26Non-specific lipid-transfer protein 6 OS=Gossypium... [more]
NLTP8_HORVU5.653e-2151.61Non-specific lipid-transfer protein Cw18 OS=Hordeu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IVaR_E06 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_E06 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304823 ID=CB304823; Name=CB304823; organism=Citrus sinensis; type=EST; length=632bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTCAAAACACAGATCACGTTT
ACATATTTAATATGATATTAAAAGCAAAGATACAAACATGACATGAGAGT
GAGACTCACACAAGTGGAGACTCGTTCGGACAAAGAAATTAACATATATA
TTCTTTATTTATTTATTCTTCTCAGTCAATCATACTTGGAAAGTCACAGA
GCTCAAACTCAACTTCACCTGACCCTAGAGCAGTCAGTGTTGGGGCTGAT
CTTGTAAGGAATGCTGACTCCACATTGACGAGGAAGGCCAGCGGCAACAT
TAGCGTTGATGCCGGGGATTGATCGGTAAGCTTGCTTCAAGCAGTTGCAT
GCAGCTTGGCGGTCAGGGGTGGTTCTGGCGGCGCCGTTGAGAGACCTGAC
GCCGTTACAGCATGGGGGTGGAGGAAAACGCCCTCCAGTTCTCAAGAAAG
CGATGCATGGAGCCAAGGAGCCTGTCACCTGCCCACATGTTATGGCATTA
GTCACTGGGGCAGTCACCAGAATGCACAAAAGCAAAGCACAAACAAGCTT
AAGAGCAGCCATGAGGATTTTTCAGGGAGGCTTTTGCTTGGTTATAGCTA
GTTATCAGGTTCTGTTTACAAGCTTGAGTCCC
back to top