CB304825

Overview
NameCB304825
Unique NameCB304825
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length516
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7725 contig Csv1_Contig7725:761..1276. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304825 vs. ExPASy Swiss-Prot
Match: PSBO_CHLRE (Oxygen-evolving enhancer protein 1, chloroplastic OS=Chlamydomonas reinhardtii GN=PSBO PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 6.148e-37
Identity = 74/104 (71.15%), Postives = 84/104 (80.77%), Query Frame = -2
Query:  189 GEFLVPSYRGSSFLDPKGRGGSTGYDNAIALPAGGRGDEEDLAKENIKNTSSSTGKITLSVTKSKPETGEVIGVFESIQPSDTDLGAKVPKDVKIQGIWYAQLE 500
            G+FLVPSYRGSSFLDPKGRGGSTGYDNA+ALPA  R D E+L KEN+K T +  G    SV K  P TGE+ GVFESIQPSDTDLGAK PKD+K+ G+WYAQL+
Sbjct:  190 GDFLVPSYRGSSFLDPKGRGGSTGYDNAVALPA--RADAEELLKENVKITKALKGSAVFSVAKVDPVTGEIAGVFESIQPSDTDLGAKPPKDIKVTGLWYAQLK 291          
BLAST of CB304825 vs. ExPASy Swiss-Prot
Match: PSBO_EUGGR (Oxygen-evolving enhancer protein 1, chloroplastic OS=Euglena gracilis GN=PSBO PE=1 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 1.160e-35
Identity = 71/108 (65.74%), Postives = 86/108 (79.63%), Query Frame = -2
Query:  192 AENFGGEFLVPSYRGSSFLDPKGRGGSTGYDNAIALPAGGRGDEEDLAKENIKNTSSSTGKITLSVTKSKPETGEVIGVFESIQPSDTDLGAKVPKDVKIQGIWYAQL 515
            A  F G+F VPSYRG++FLDPKGRGG++GYD A+ALPA G  D+E+ AKEN K+T++S G I   V K   ETGE+ GVFESIQPSDTDLGAKVPKD+K  G+WYAQ+
Sbjct:  229 AGQFLGQFDVPSYRGATFLDPKGRGGASGYDTAVALPASG--DDEEYAKENSKSTAASVGTIAFKVAKVNAETGEIAGVFESIQPSDTDLGAKVPKDIKTSGVWYAQI 334          
BLAST of CB304825 vs. ExPASy Swiss-Prot
Match: PSBO_ANASP (Photosystem II manganese-stabilizing polypeptide OS=Anabaena sp. (strain PCC 7120) GN=psbO PE=3 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 2.766e-29
Identity = 62/107 (57.94%), Postives = 80/107 (74.77%), Query Frame = -2
Query:  189 NFGGEFLVPSYRGSSFLDPKGRGGSTGYDNAIALPAGGRGDEEDLAKENIKNTSSSTGKITLSVTKSKPETGEVIGVFESIQPSDTDLGAKVPKDVKIQGIWYAQLE 509
            +F G F VPSYRG++FLDPKGRG  +GYDNA+ALPA  + D+EDL + N+K      GKI+L + K    +GE+ G FES QPSDTDLGA  PK+VKI+GI+YA++E
Sbjct:  169 DFEGTFKVPSYRGAAFLDPKGRGVVSGYDNAVALPA--QADDEDLTRTNVKRAEILNGKISLQIAKVDSSSGEIAGTFESEQPSDTDLGADEPKEVKIRGIFYARVE 273          
BLAST of CB304825 vs. ExPASy Swiss-Prot
Match: PSBO_CYAA5 (Photosystem II manganese-stabilizing polypeptide OS=Cyanothece sp. (strain ATCC 51142) GN=psbO PE=3 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 1.051e-28
Identity = 65/106 (61.32%), Postives = 81/106 (76.42%), Query Frame = -2
Query:  192 NFGGEFLVPSYRGSSFLDPKGRGGSTGYDNAIALPAGGRGDEEDLAKENIKNTSSSTGKITLSVTKSKPETGEVIGVFESIQPSDTDLGAKVPKDVKIQGIWYAQL 509
            +F G+F VPSYRG++FLDPKGRG +TGYDNA+ALPA    D+ED A  N+K T    G I+L VTK    TGE+ GVF+S QPSDTDLGAK P +VKI+GI+YA++
Sbjct:  170 DFEGDFRVPSYRGATFLDPKGRGLATGYDNAVALPA--TADKEDYA--NVKQTPIGKGSISLQVTKVDQATGEIAGVFDSEQPSDTDLGAKEPVEVKIRGIFYARV 271          
BLAST of CB304825 vs. ExPASy Swiss-Prot
Match: PSBO_THEEB (Photosystem II manganese-stabilizing polypeptide OS=Thermosynechococcus elongatus (strain BP-1) GN=psbO PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 8.329e-26
Identity = 59/107 (55.14%), Postives = 79/107 (73.83%), Query Frame = -2
Query:  189 NFGGEFLVPSYRGSSFLDPKGRGGSTGYDNAIALPAGGRGDEEDLAKENIKNTSSSTGKITLSVTKSKPETGEVIGVFESIQPSDTDLGAKVPKDVKIQGIWYAQLE 509
            +F GEF VPSYR ++FLDPKGRG ++GYD+AIALP   +  EE+LA+ N+K  S + G+I+L+V K    TGE+ G FES Q SD D+GA  P +VKIQG++YA +E
Sbjct:  167 DFKGEFNVPSYRTANFLDPKGRGLASGYDSAIALP---QAKEEELARANVKRFSLTKGQISLNVAKVDGRTGEIAGTFESEQLSDDDMGAHEPHEVKIQGVFYASIE 270          
BLAST of CB304825 vs. ExPASy Swiss-Prot
Match: PSBO_SYNEN (Photosystem II manganese-stabilizing polypeptide OS=Synechococcus elongatus naegeli GN=psbO PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 8.329e-26
Identity = 59/107 (55.14%), Postives = 79/107 (73.83%), Query Frame = -2
Query:  189 NFGGEFLVPSYRGSSFLDPKGRGGSTGYDNAIALPAGGRGDEEDLAKENIKNTSSSTGKITLSVTKSKPETGEVIGVFESIQPSDTDLGAKVPKDVKIQGIWYAQLE 509
            +F GEF VPSYR ++FLDPKGRG ++GYD+AIALP   +  EE+LA+ N+K  S + G+I+L+V K    TGE+ G FES Q SD D+GA  P +VKIQG++YA +E
Sbjct:  167 DFKGEFNVPSYRTANFLDPKGRGLASGYDSAIALP---QAKEEELARANVKRFSLTKGQISLNVAKVDGRTGEIAGTFESEQLSDDDMGAHEPHEVKIQGVFYASIE 270          
BLAST of CB304825 vs. ExPASy Swiss-Prot
Match: PSBO_SYNY3 (Photosystem II manganese-stabilizing polypeptide OS=Synechocystis sp. (strain PCC 6803) GN=psbO PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 5.399e-25
Identity = 57/107 (53.27%), Postives = 74/107 (69.16%), Query Frame = -2
Query:  189 NFGGEFLVPSYRGSSFLDPKGRGGSTGYDNAIALPAGGRGDEEDLAKENIKNTSSSTGKITLSVTKSKPETGEVIGVFESIQPSDTDLGAKVPKDVKIQGIWYAQLE 509
            +F G+F VPSYRG+ FLDPK RG  TGYDNA+ALP+       D  + N K T    G ++L VT+    TGE+ G+FES QPSDTDLGAK P DVK++GI+Y +++
Sbjct:  170 DFVGDFNVPSYRGAGFLDPKARGLYTGYDNAVALPSAA-----DKFRTNKKETPLGKGTLSLQVTQVDGSTGEIAGIFESEQPSDTDLGAKEPLDVKVRGIFYGRVD 271          
BLAST of CB304825 vs. ExPASy Swiss-Prot
Match: PSBO_SYNE7 (Photosystem II manganese-stabilizing polypeptide OS=Synechococcus elongatus (strain PCC 7942) GN=psbO PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 9.209e-25
Identity = 56/104 (53.85%), Postives = 76/104 (73.08%), Query Frame = -2
Query:  189 GEFLVPSYRGSSFLDPKGRGGSTGYDNAIALPAGGRGDEEDLAKENIKNTSSSTGKITLSVTKSKPETGEVIGVFESIQPSDTDLGAKVPKDVKIQGIWYAQLE 500
            G + VPSYR S+FLDPK RG +TGY++A+A+P+ G  D EDL KEN+K   +  G+I+L+V+K    TGEV GVF +IQPSDTD+G K   DVK+ G +Y ++E
Sbjct:  172 GGYRVPSYRTSNFLDPKARGLTTGYESAVAIPSAG--DAEDLTKENVKRFVTGQGEISLAVSKVDGATGEVAGVFTAIQPSDTDMGGKEAVDVKLVGQFYGRIE 273          
BLAST of CB304825 vs. ExPASy Swiss-Prot
Match: PSBO_POPEU (Oxygen-evolving enhancer protein 1, chloroplastic (Fragments) OS=Populus euphratica GN=PSBO PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 5.600e-14
Identity = 41/73 (56.16%), Postives = 45/73 (61.64%), Query Frame = -2
Query:  228 RGGSTGYDNAIALPAGGRGDEEDLAKENIKNTSSSTGKITLSVTKSKPETGEVIGVFESIQPSDTDLGAKVPK 446
            +GGSTGYDNA+ALPAGGR                           SKPETGE+IGVFES+QPSDTDLGAK PK
Sbjct:   55 KGGSTGYDNAVALPAGGR---------------------------SKPETGEIIGVFESLQPSDTDLGAKTPK 100          
The following BLAST results are available for this feature:
BLAST of CB304825 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
PSBO_CHLRE6.148e-3771.15Oxygen-evolving enhancer protein 1, chloroplastic ... [more]
PSBO_EUGGR1.160e-3565.74Oxygen-evolving enhancer protein 1, chloroplastic ... [more]
PSBO_ANASP2.766e-2957.94Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_CYAA51.051e-2861.32Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_THEEB8.329e-2655.14Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_SYNEN8.329e-2655.14Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_SYNY35.399e-2553.27Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_SYNE79.209e-2553.85Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_POPEU5.600e-1456.16Oxygen-evolving enhancer protein 1, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IVaR_E12 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_E12 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304825 ID=CB304825; Name=CB304825; organism=Citrus sinensis; type=EST; length=516bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAATTGCAAGCATTATTAT
AGCATGCCATGATAATATACAGACGTGATAACATTCTCAGTGCTACTAAA
TTGAATTACAGAAATGTTTAGCAACACCTTCAACATGTTTCAAAATCTGA
ATAGGAATAAGTACACTCATACAAGAAAAGCTCTATTGCTCAAGCTGTGC
ATACCAAATACCCTGGATCTTAACATCCTTTGGAACCTTGGCTCCCAAAT
CAGTATCAGATGGCTGAATGCTCTCAAACACTCCAATAACCTCTCCGGTC
TCAGGCTTGCTCTTGGTAACGCTGAGGGTGATCTTCCCTGTTGAAGATGA
AGTATTCTTGATATTCTCCTTGGCGAGATCTTCCTCGTCCCCTCTTCCAC
CGGCAGGCAATGCAATAGCATTGTCATAACCAGTTGAACCACCCCTTCCC
TTTGGGTCCAAGAAGGATGATCCACGGTAAGATGGTACCAGGAATTCTCC
TCCGAAATTCTCAGCC
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