CB304826

Overview
NameCB304826
Unique NameCB304826
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length467
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304826 vs. ExPASy Swiss-Prot
Match: CHI9_ORYSJ (Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht9 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 4.990e-18
Identity = 54/123 (43.90%), Postives = 64/123 (52.03%), Query Frame = -3
Query:  160 RGPIQLTGNGNYIEAGRAIGFDGLNSPETVARDRVISFKTALWFWMT------YVHSVLN---------------QGFSETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGSRLEC 465
            RGPIQL+ N NY  AG AIG D LN+PE VA D V+SFKTALWFWMT        H V+                 G+      ING  ECG    D+V +R+  Y  YC   G+  GS L+C
Sbjct:  198 RGPIQLSYNYNYGPAGEAIGEDLLNNPELVASDPVVSFKTALWFWMTPQSPKPSCHDVITGQWTPSSGDIAAGRVPGYGVITNIINGGLECGFGPDDRVANRIGFYQRYCDVLGIGYGSNLDC 320          
BLAST of CB304826 vs. ExPASy Swiss-Prot
Match: CHI2_ORYSJ (Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht2 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 4.990e-18
Identity = 51/123 (41.46%), Postives = 64/123 (52.03%), Query Frame = -3
Query:  160 RGPIQLTGNGNYIEAGRAIGFDGLNSPETVARDRVISFKTALWFWMT------YVHSVLN---------------QGFSETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGSRLEC 465
            RGPIQL+ N NY  AGRAIG D L++P+ VA D  +SFKTALWFWMT        H V+                 G+      +NG  ECG    D+V +R+  Y  YC  FG+  G  L+C
Sbjct:  201 RGPIQLSFNFNYGPAGRAIGVDLLSNPDLVATDATVSFKTALWFWMTPQGNKPSSHDVITGRWAPSPADAAAGRAPGYGVITNIVNGGLECGHGPDDRVANRIGFYQRYCGAFGIGTGGNLDC 323          
BLAST of CB304826 vs. ExPASy Swiss-Prot
Match: CHID_SOLLC (Basic endochitinase (Fragment) OS=Solanum lycopersicum GN=CHI14 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 6.517e-18
Identity = 51/123 (41.46%), Postives = 65/123 (52.85%), Query Frame = -3
Query:  160 RGPIQLTGNGNYIEAGRAIGFDGLNSPETVARDRVISFKTALWFWMT------YVHSVLN---------------QGFSETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGSRLEC 465
            RGPIQ++ N NY  AG AIG + LN+P+ VA D V+SFKTALWFWMT        H V+                 GF      ING  EC   +   + +R+  Y  YC+  GVDPG+ L+C
Sbjct:  117 RGPIQISYNYNYGAAGSAIGVNLLNNPDLVANDAVVSFKTALWFWMTAQQPKPSAHDVITGRWSPSVADSAPGRVPGFGVITNIINGGMECNSGSNALMDNRIGFYRRYCQILGVDPGNNLDC 239          
BLAST of CB304826 vs. ExPASy Swiss-Prot
Match: CHIT_PHAVU (Endochitinase OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.112e-17
Identity = 51/123 (41.46%), Postives = 63/123 (51.22%), Query Frame = -3
Query:  160 RGPIQLTGNGNYIEAGRAIGFDGLNSPETVARDRVISFKTALWFWMT------YVHSVLNQ---------------GFSETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGSRLEC 465
            RGPIQ++ N NY + GRAIG D LN P+ VA D VISFK+ALWFWMT        H V+                 G+      ING  ECG     +V DR+  +  YC   GV  G+ L+C
Sbjct:  187 RGPIQISWNYNYGQCGRAIGVDLLNKPDLVATDSVISFKSALWFWMTAQSPKPSSHDVITSRWTPSSADVAARRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFFKRYCDLLGVGYGNNLDC 309          
BLAST of CB304826 vs. ExPASy Swiss-Prot
Match: CHIQ_TOBAC (Acidic endochitinase Q OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.112e-17
Identity = 51/123 (41.46%), Postives = 62/123 (50.41%), Query Frame = -3
Query:  160 RGPIQLTGNGNYIEAGRAIGFDGLNSPETVARDRVISFKTALWFWMT---------------YVHSVLNQ------GFSETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGSRLEC 465
            RGPIQLT   NY +AG AIG + +N+P+ VA D  ISFKTA+WFWMT               +  S  +Q      G+      ING  ECG    D V DR+  Y  YC    V PG  L+C
Sbjct:  122 RGPIQLTNRNNYEKAGTAIGQELVNNPDLVATDATISFKTAIWFWMTPQDNKPSSHDVIIGRWTPSAADQAANRVPGYGVITNIINGGIECGIGRNDAVEDRIGYYRRYCGMLNVAPGENLDC 244          
BLAST of CB304826 vs. ExPASy Swiss-Prot
Match: CHIC_SECCE (Basic endochitinase C OS=Secale cereale GN=rscc PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.112e-17
Identity = 53/123 (43.09%), Postives = 62/123 (50.41%), Query Frame = -3
Query:  160 RGPIQLTGNGNYIEAGRAIGFDGLNSPETVARDRVISFKTALWFWMT------YVHSVLN---------------QGFSETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGSRLEC 465
            RGPIQL+ N NY  AGRAIG D L +P+ VA D  +SFKTALWFWMT        H+V+                 GF      ING  ECG     +V DR+  Y  YC   GV  G  L+C
Sbjct:  137 RGPIQLSHNYNYGPAGRAIGVDLLRNPDLVATDPTVSFKTALWFWMTAQAPKPSSHAVITGKWSPSGADRAAGRAPGFGVITNIINGGLECGHGQDSRVADRIGFYKRYCDILGVGYGDNLDC 259          
BLAST of CB304826 vs. ExPASy Swiss-Prot
Match: CHI5_PHAVU (Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.112e-17
Identity = 51/123 (41.46%), Postives = 63/123 (51.22%), Query Frame = -3
Query:  160 RGPIQLTGNGNYIEAGRAIGFDGLNSPETVARDRVISFKTALWFWMT------YVHSVLNQ---------------GFSETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGSRLEC 465
            RGPIQ++ N NY + GRAIG D LN P+ VA D VISFK+ALWFWMT        H V+                 G+      ING  ECG     +V DR+  +  YC   GV  G+ L+C
Sbjct:  186 RGPIQISWNYNYGQCGRAIGVDLLNKPDLVATDSVISFKSALWFWMTAQSPKPSSHDVITSRWTPSSADVAARRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFFKRYCDLLGVGYGNNLDC 308          
BLAST of CB304826 vs. ExPASy Swiss-Prot
Match: CHI2_BRANA (Endochitinase CH25 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.112e-17
Identity = 50/123 (40.65%), Postives = 65/123 (52.85%), Query Frame = -3
Query:  160 RGPIQLTGNGNYIEAGRAIGFDGLNSPETVARDRVISFKTALWFWMT------YVHSVL---------------NQGFSETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGSRLEC 465
            RGP+QL+ N NY + GRAIG D LN+P+ V+ D VI+FK A+WFWMT        H+V+                 G+      ING  ECG     +V DR+  Y  YC   GV+PG  L+C
Sbjct:  183 RGPMQLSWNYNYGQCGRAIGSDLLNNPDLVSNDPVIAFKAAIWFWMTPQSPKPSCHAVIVGQWQPSDADRAAGRVPGYGVITNIINGGLECGRGQDARVADRIGFYQRYCNILGVNPGGNLDC 305          
BLAST of CB304826 vs. ExPASy Swiss-Prot
Match: CHIX_PEA (Endochitinase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.452e-17
Identity = 51/123 (41.46%), Postives = 66/123 (53.66%), Query Frame = -3
Query:  160 RGPIQLTGNGNYIEAGRAIGFDGLNSPETVARDRVISFKTALWFWMT------YVHSVLN---------------QGFSETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGSRLEC 465
            RGPIQLT N NY  AG+AI  D +N+P+ ++ +  +SFKTA+WFWMT        H V+                 G+      ING  ECG    ++V DRV  Y  YC+ FGVDPG  L+C
Sbjct:  191 RGPIQLTHNYNYGLAGQAIKEDLINNPDLLSTNPTVSFKTAIWFWMTPQANKPSSHDVITGRWTPSAADSSAGRVPGYGVITNIINGGIECGHGQDNRVDDRVGFYKRYCQIFGVDPGGNLDC 313          
BLAST of CB304826 vs. ExPASy Swiss-Prot
Match: CHI8_ORYSJ (Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht8 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.896e-17
Identity = 49/123 (39.84%), Postives = 61/123 (49.59%), Query Frame = -3
Query:  160 RGPIQLTGNGNYIEAGRAIGFDGLNSPETVARDRVISFKTALWFWMT------YVHSVL---------------NQGFSETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGSRLEC 465
            RGPIQLTG  NY  AG A+G D + +P+ V+ D V+SFKTA+WFWMT        H V+                 G+      ING  ECG    D  +DR+  Y  YC   G   GS L+C
Sbjct:  131 RGPIQLTGQSNYQAAGNALGLDLVGNPDLVSTDAVVSFKTAIWFWMTAQGNKPSCHDVILGRWTPSAADTAAGRVPGYGVITNIINGGIECGVGQNDANVDRIGYYKRYCDMLGAGYGSNLDC 253          
The following BLAST results are available for this feature:
BLAST of CB304826 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
CHI9_ORYSJ4.990e-1843.90Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI2_ORYSJ4.990e-1841.46Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHID_SOLLC6.517e-1841.46Basic endochitinase (Fragment) OS=Solanum lycopers... [more]
CHIT_PHAVU1.112e-1741.46Endochitinase OS=Phaseolus vulgaris PE=1 SV=1[more]
CHIQ_TOBAC1.112e-1741.46Acidic endochitinase Q OS=Nicotiana tabacum PE=1 S... [more]
CHIC_SECCE1.112e-1743.09Basic endochitinase C OS=Secale cereale GN=rscc PE... [more]
CHI5_PHAVU1.112e-1741.46Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1[more]
CHI2_BRANA1.112e-1740.65Endochitinase CH25 OS=Brassica napus PE=2 SV=1[more]
CHIX_PEA1.452e-1741.46Endochitinase OS=Pisum sativum PE=2 SV=1[more]
CHI8_ORYSJ1.896e-1739.84Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IVaR_F01 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_F01 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304826 ID=CB304826; Name=CB304826; organism=Citrus sinensis; type=EST; length=467bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGATCAGGTACAAGAAAAT
TATTCCGTCAGAGTTACCAAACAGAGAAAGTTGTTTGAAATAACTCTGGC
TTATTGTGATACAATATAATACATATACTGTAATATTTTTTGTACAAAAT
ATCTATTCAGCATTCAAGACGTGATCCAGGATCAACACCAAATCTTTTGC
AATAATCAGTGTAACGCCTAACACGATCCAGAACTTGGTCGCGGTTTCGG
CCACCGCATTCAGCAGGACCATTAATTTTCCGAATTGTTTCACTAAAACC
TTGGTTTAGTACTGAGTGCACATATGTCATCCAAAACCACAAAGCAGTCT
TGAAAGATATGACACGGTCCCTGGCTACTGTTTCCGGAGAGTTCAGACCG
TCGAAACCGATGGCCCTTCCCGCCTCTATGTAGTTTCCATTTCCGGTGAG
CTGAATCGGTCCCCGGC
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