CB304826

Overview
NameCB304826
Unique NameCB304826
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length467
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304826 vs. ExPASy Swiss-Prot
Match: CHIP_TOBAC (Acidic endochitinase P OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.040e-15
Identity = 50/123 (40.65%), Postives = 59/123 (47.97%), Query Frame = -3
Query:  160 RGPIQLTGNGNYIEAGRAIGFDGLNSPETVARDRVISFKTALWFWMT---------------YVHSVLNQ------GFSETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGSRLEC 465
            RGPIQLT   NY +AG AI  D +N+P+ VA D  ISFKTA+WFWMT               +  S  +Q      G       ING  ECG      V DR+  Y  YC    V PG  L+C
Sbjct:  122 RGPIQLTNQNNYEKAGNAIRQDLVNNPDLVATDATISFKTAIWFWMTPQDNKPSSHDVIIGSWTPSAADQSANRAPGCGVITNIINGGIECGVGPNAAVEDRIGYYRRYCGMLNVAPGDNLDC 244          
BLAST of CB304826 vs. ExPASy Swiss-Prot
Match: CHIT_CARPA (Endochitinase OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.359e-15
Identity = 48/123 (39.02%), Postives = 61/123 (49.59%), Query Frame = -3
Query:  160 RGPIQLTGNGNYIEAGRAIGFDGLNSPETVARDRVISFKTALWFWMT------YVHSVLN---------------QGFSETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGSRLEC 465
            RGP+QL+ N NY   G A+  + L +P+ VA DRV+SFKTALWFWMT        H VL                 G+      +NG  ECG     QV DR+  +  YC   GV  G+ L+C
Sbjct:  114 RGPLQLSWNYNYGPCGEALRVNLLGNPDLVATDRVLSFKTALWFWMTPQAPKPSCHDVLTGRWQPSAADTAAGRLPGYGVLTNLLNGGLECGKGPNPQVADRLGFFRRYCGLLGVGTGNNLDC 236          
BLAST of CB304826 vs. ExPASy Swiss-Prot
Match: CHI12_ORYSJ (Chitinase 12 OS=Oryza sativa subsp. japonica GN=Cht12 PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 2.318e-15
Identity = 49/123 (39.84%), Postives = 59/123 (47.97%), Query Frame = -3
Query:  160 RGPIQLTGNGNYIEAGRAIGFDGLNSPETVARDRVISFKTALWFWMT------YVHSVLN---------------QGFSETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGSRLEC 465
            RGPIQL+ N NY  AG+AIG D L  P+ VA D  +SF TA WFWMT        H+V                  G+      ING  ECG    D+V DR+  Y  YC   GV   + L+C
Sbjct:  196 RGPIQLSYNFNYGPAGQAIGADLLGDPDLVASDATVSFDTAFWFWMTPQSPKPSCHAVATGQWTPSADDQAAGRVPGYGVITNIINGGLECGHGEDDRVADRIGFYKRYCDILGVSYDANLDC 318          
BLAST of CB304826 vs. ExPASy Swiss-Prot
Match: CHI11_ORYSJ (Chitinase 11 OS=Oryza sativa subsp. japonica GN=Cht11 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.027e-15
Identity = 48/124 (38.71%), Postives = 61/124 (49.19%), Query Frame = -3
Query:  160 RGPIQLTGNGNYIEAGRAIGFDGLNSPETVARDRVISFKTALWFWMT------YVHSVLNQ---------------GFSETIRKINGPAECG-GRNRDQVLDRVRRYTDYCKRFGVDPGSRLEC 465
            RGPIQLT   NY  AG A+G D +N+P+ V+ D V++F+TA+WFWMT        H V+                 G+      ING  ECG G + D   DRV  Y  YC  F V  G  + C
Sbjct:  124 RGPIQLTHKYNYQLAGDALGLDLVNNPDLVSSDPVVAFRTAIWFWMTAQSPKPSCHDVITNQWTPSGDDRSSGRLPGYGMATNIINGGEECGKGYSTDNAKDRVGYYKRYCDMFRVGYGDNIAC 247          
BLAST of CB304826 vs. ExPASy Swiss-Prot
Match: CHIT_PETHY (Acidic endochitinase OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 3.953e-15
Identity = 48/123 (39.02%), Postives = 59/123 (47.97%), Query Frame = -3
Query:  160 RGPIQLTGNGNYIEAGRAIGFDGLNSPETVARDRVISFKTALWFWMT------YVHSVLN---------------QGFSETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGSRLEC 465
            RGPIQLTG  NY  AG+AI  D +N+P+ VA D  +SFKTA+WFWMT        H V+                 G+      ING  ECG     +V DR+  Y        V PG  L+C
Sbjct:  123 RGPIQLTGQSNYDLAGKAIEQDLVNNPDLVATDATVSFKTAIWFWMTPQGNKPSCHDVITGRWTPSAADTSANRVPGYGVITNIINGGIECGKGQNARVEDRIGYYRRNVSIMNVAPGDNLDC 245          
BLAST of CB304826 vs. ExPASy Swiss-Prot
Match: CHI4_SOLTU (Endochitinase 4 (Fragment) OS=Solanum tuberosum GN=CHTB4 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.502e-14
Identity = 47/110 (42.73%), Postives = 57/110 (51.82%), Query Frame = -3
Query:  199 RGPIQLTGNGNYIEAGRAIGFDGLNSPETVARDRVISFKTALWFWMT------YVHSVL---------------NQGFSETIRKINGPAECGGRNRDQVLDRVRRYTDYC 465
            RGPIQ++ N NY   GRAIG D LN+P+ VA D VISFK+A+WFWMT        H V+                 GF      ING  ECG  +  +V DR+  Y  YC
Sbjct:  191 RGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKSAIWFWMTPQSPKPSCHDVIIGRWQPSAADRAANRLPGFGVITNIINGGLECGRGSDSRVQDRIGFYRRYC 300          
BLAST of CB304826 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSJ (Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 4.833e-13
Identity = 47/124 (37.90%), Postives = 58/124 (46.77%), Query Frame = -3
Query:  160 RGPIQLTGNGNYIEAGRAIGFDGLNSPETVARDRVISFKTALWFWMT-------YVHSVLN---------------QGFSETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGSRLEC 465
            RGP+Q+  N NY  AG AIG D L +PE VA D  ++FKTALW WMT         H+V+                 G+  T   + G  +C G N     DRV  Y  YC   GV  G  L+C
Sbjct:  202 RGPMQIAYNYNYGAAGEAIGADLLGNPELVATDPTVAFKTALWLWMTARSPSQPSPHAVVTGQWTPTPADSAAGRAPGYGLTTNILTGGLQCAGGNGG--ADRVAFYKRYCDVLGVGYGPNLDC 323          
BLAST of CB304826 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSI (Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 4.833e-13
Identity = 47/124 (37.90%), Postives = 58/124 (46.77%), Query Frame = -3
Query:  160 RGPIQLTGNGNYIEAGRAIGFDGLNSPETVARDRVISFKTALWFWMT-------YVHSVLN---------------QGFSETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGSRLEC 465
            RGP+Q+  N NY  AG AIG D L +PE VA D  ++FKTALW WMT         H+V+                 G+  T   + G  +C G N     DRV  Y  YC   GV  G  L+C
Sbjct:  202 RGPMQIAYNYNYGAAGEAIGADLLGNPELVATDPTVAFKTALWLWMTARSPSQPSPHAVVTGQWTPTPADSAAGRAPGYGLTTNILTGGLQCAGGNGG--ADRVAFYKRYCDVLGVGYGPNLDC 323          
BLAST of CB304826 vs. ExPASy Swiss-Prot
Match: CHIA_SOLLC (Acidic 26 kDa endochitinase OS=Solanum lycopersicum GN=CHI3 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 6.312e-13
Identity = 46/125 (36.80%), Postives = 58/125 (46.40%), Query Frame = -3
Query:  160 RGPIQLTGNGNYIEAGRAIGF--DGLNSPETVARDRVISFKTALWFWMT------YVHSVL---------------NQGFSETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGSRLEC 465
            RGPIQLT   NY  AG+ IG   + +N+P+ VA D +ISFKTA+WFWMT        H+V+                 G+      ING  ECG         R+  Y  YC    V  G  L+C
Sbjct:  120 RGPIQLTHQSNYERAGQGIGVGQELVNNPDLVATDPIISFKTAIWFWMTEQDNKPSCHNVIIGQWTPSPKDTAANRVPGYGVITNIINGQFECGMGPNTAAESRIGFYRRYCGMLNVPTGENLDC 244          
BLAST of CB304826 vs. ExPASy Swiss-Prot
Match: CHIA_SOLCI (Acidic endochitinase pcht28 OS=Solanum chilense PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 8.243e-13
Identity = 46/125 (36.80%), Postives = 58/125 (46.40%), Query Frame = -3
Query:  160 RGPIQLTGNGNYIEAGRAIGF--DGLNSPETVARDRVISFKTALWFWMT------YVHSVL---------------NQGFSETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGSRLEC 465
            RGPIQLT   NY  AG+ IG   D +N+P+ VA D +ISF+TA+WFWMT        H+V+                 G+      ING  EC       V  R+  Y  YC    V  G  L+C
Sbjct:  120 RGPIQLTHQSNYERAGQGIGVGQDLVNNPDLVATDPIISFRTAIWFWMTAQDNKPSCHNVIIGQWTPSPADTAANRVPGYGVITNIINGGLECNMGPNTAVESRIGFYRRYCGMLNVPTGENLDC 244          
The following BLAST results are available for this feature:
BLAST of CB304826 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
CHIP_TOBAC1.040e-1540.65Acidic endochitinase P OS=Nicotiana tabacum PE=1 S... [more]
CHIT_CARPA1.359e-1539.02Endochitinase OS=Carica papaya PE=1 SV=1[more]
CHI12_ORYSJ2.318e-1539.84Chitinase 12 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHI11_ORYSJ3.027e-1538.71Chitinase 11 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIT_PETHY3.953e-1539.02Acidic endochitinase OS=Petunia hybrida PE=2 SV=1[more]
CHI4_SOLTU1.502e-1442.73Endochitinase 4 (Fragment) OS=Solanum tuberosum GN... [more]
CHI7_ORYSJ4.833e-1337.90Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI7_ORYSI4.833e-1337.90Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 ... [more]
CHIA_SOLLC6.312e-1336.80Acidic 26 kDa endochitinase OS=Solanum lycopersicu... [more]
CHIA_SOLCI8.243e-1336.80Acidic endochitinase pcht28 OS=Solanum chilense PE... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IVaR_F01 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_F01 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304826 ID=CB304826; Name=CB304826; organism=Citrus sinensis; type=EST; length=467bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGATCAGGTACAAGAAAAT
TATTCCGTCAGAGTTACCAAACAGAGAAAGTTGTTTGAAATAACTCTGGC
TTATTGTGATACAATATAATACATATACTGTAATATTTTTTGTACAAAAT
ATCTATTCAGCATTCAAGACGTGATCCAGGATCAACACCAAATCTTTTGC
AATAATCAGTGTAACGCCTAACACGATCCAGAACTTGGTCGCGGTTTCGG
CCACCGCATTCAGCAGGACCATTAATTTTCCGAATTGTTTCACTAAAACC
TTGGTTTAGTACTGAGTGCACATATGTCATCCAAAACCACAAAGCAGTCT
TGAAAGATATGACACGGTCCCTGGCTACTGTTTCCGGAGAGTTCAGACCG
TCGAAACCGATGGCCCTTCCCGCCTCTATGTAGTTTCCATTTCCGGTGAG
CTGAATCGGTCCCCGGC
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