CB304861

Overview
NameCB304861
Unique NameCB304861
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length592
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6145 contig Csv1_Contig6145:453..1044. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODF_BORPE (Superoxide dismutase [Fe] OS=Bordetella pertussis GN=sodB PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 2.927e-13
Identity = 35/91 (38.46%), Postives = 52/91 (57.14%), Query Frame = -2
Query:  316 FGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNVWNVMNWKYAS 588
            +GS++A  +  +   A   GSGW WL    +    +V T+    PL T    L   L  DVWEHAYY+ Y+N +P YL+N W ++NW++A+
Sbjct:  101 WGSVDAFKEAFNKSAAGNFGSGWTWLVKKADGTLDIVNTSNAATPLTTADKAL---LTCDVWEHAYYIDYRNARPKYLENFWALVNWEFAA 188          
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODF_AERPE (Superoxide dismutase [Mn/Fe] OS=Aeropyrum pernix GN=sod PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.823e-13
Identity = 38/87 (43.68%), Postives = 49/87 (56.32%), Query Frame = -2
Query:  328 FGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNVWNVMNW 588
            FG  E      SA    ++G GW  L  D   + L +      + L+T    LVP+L IDVWEHAYYLQYKN +  Y++N WNV+NW
Sbjct:  108 FGGFEKFKALFSAAAKTVEGVGWGVLAFDPLTEELRILQVEKHNVLMTAG--LVPILVIDVWEHAYYLQYKNDRGSYVENWWNVVNW 192          
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODM_BORBU (Superoxide dismutase [Fe] OS=Borrelia burgdorferi GN=sod PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.521e-13
Identity = 37/96 (38.54%), Postives = 52/96 (54.17%), Query Frame = -2
Query:  301 FGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNVWNVMNWKYASDVYQK 588
            FGSL+ L   +      + GSGW WL L  E    V+       PL+    +  P+LGIDVWEHAYYL+Y+N + +Y+      +NW+  S VY +
Sbjct:  108 FGSLDVLKANLKDTAMKIFGSGWAWLVLCPESGLKVISMPNQDSPLMN---SYKPILGIDVWEHAYYLKYQNRRIEYVDAFLKALNWEEVSKVYNE 200          
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODF_NICPL (Superoxide dismutase [Fe], chloroplastic (Fragment) OS=Nicotiana plumbaginifolia GN=SODB PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.521e-13
Identity = 37/79 (46.84%), Postives = 49/79 (62.03%), Query Frame = -2
Query:  355 FGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTAN-QDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYL 588
            FGS +A +++  A  A   GSGW WL    E K+L +  T N ++PLV       PLL IDVWEHAYYL ++N +PDY+
Sbjct:  105 FGSYDAFVKEFKAAAATQFGSGWAWLAYKPEEKKLALVKTPNAENPLVLG---YTPLLTIDVWEHAYYLDFQNRRPDYI 180          
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODF_CAMJJ (Superoxide dismutase [Fe] OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=sodB PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.521e-13
Identity = 35/95 (36.84%), Postives = 56/95 (58.95%), Query Frame = -2
Query:  304 FGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNVWNVMNWKYASDVYQ 588
            FGSLE    +       + GSGW WL  +T+ ++L    T+N    +T+    VPLL +DVWEHAYY+ ++N +P YL+  +  +NW++ +  Y+
Sbjct:  107 FGSLENFKAEFIKGATGVFGSGWFWLVYNTKNQKLEFVGTSNAATPITEDK--VPLLVVDVWEHAYYVDHRNARPAYLEKFYAHINWEFVAKAYE 199          
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODF_CAMJE (Superoxide dismutase [Fe] OS=Campylobacter jejuni GN=sodB PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.521e-13
Identity = 35/95 (36.84%), Postives = 56/95 (58.95%), Query Frame = -2
Query:  304 FGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNVWNVMNWKYASDVYQ 588
            FGSLE    +       + GSGW WL  +T+ ++L    T+N    +T+    VPLL +DVWEHAYY+ ++N +P YL+  +  +NW++ +  Y+
Sbjct:  107 FGSLENFKAEFIKGATGVFGSGWFWLVYNTKNQKLEFVGTSNAATPITEDK--VPLLVVDVWEHAYYVDHRNARPAYLEKFYAHINWEFVAKAYE 199          
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODF_CAMCO (Superoxide dismutase [Fe] OS=Campylobacter coli GN=sodB PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.521e-13
Identity = 35/95 (36.84%), Postives = 56/95 (58.95%), Query Frame = -2
Query:  304 FGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNVWNVMNWKYASDVYQ 588
            FGSLE    +       + GSGW WL  +T+ ++L    T+N    +T+    VPLL +DVWEHAYY+ ++N +P YL+  +  +NW++ +  Y+
Sbjct:  107 FGSLENFKAEFIKGATGVFGSGWFWLVYNTKNQKLEFVGTSNAATPITEDK--VPLLVVDVWEHAYYVDHRNARPAYLEKFYAHINWEFVAKAYE 199          
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODM_BUCBP (Superoxide dismutase [Mn] OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=sodA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 8.517e-13
Identity = 36/76 (47.37%), Postives = 50/76 (65.79%), Query Frame = -2
Query:  316 GSGWVWLGLDTEFKRLVVETTANQD-PLVTK---APTLVPLLGIDVWEHAYYLQYKNVKPDYLKNVWNVMNWKYAS 531
            GSGW+WL +      L + TT NQ+ PL+ K     + +P+LG+D+WEHAYYL+YKN + DY+   WNV+NW   S
Sbjct:  125 GSGWIWL-IKKYDNTLRIVTTVNQNTPLMGKEISGISGIPILGLDLWEHAYYLKYKNNRSDYVNAFWNVVNWDEVS 199          
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODF_METTH (Superoxide dismutase [Fe] OS=Methanobacterium thermoautotrophicum GN=sod PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 8.517e-13
Identity = 35/88 (39.77%), Postives = 49/88 (55.68%), Query Frame = -2
Query:  325 FGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNVWNVMNWK 588
            FGS E   ++ S    + +GSGW  L       RL +      +  V   P    LL +DVWEHAYY+ Y+NV+PDY++  WN++NWK
Sbjct:  110 FGSFERFRKEFSQAAISAEGSGWAVLTYCQRTDRLFIMQVEKHN--VNVIPHFRILLVLDVWEHAYYIDYRNVRPDYVEAFWNIVNWK 195          
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODF_PLAMA (Superoxide dismutase [Fe] OS=Plasmodium malariae GN=SODB PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.897e-12
Identity = 34/96 (35.42%), Postives = 56/96 (58.33%), Query Frame = -2
Query:  301 FGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNVWNVMNWKYASDVYQK 588
            FGS     ++ S       GSGW WL L+   K ++++T    +P+  K  T +P+L  D+WEHAY + Y+N +  Y+K  WN++NW +A++  +K
Sbjct:  101 FGSFNNFKEQFSNILCGHFGSGWGWLALNNNNKLVILQTHDAGNPI--KDNTGIPILTCDIWEHAYCIDYRNDRASYVKAWWNLVNWNFANENLKK 194          
The following BLAST results are available for this feature:
BLAST of CB304861 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
SODF_BORPE2.927e-1338.46Superoxide dismutase [Fe] OS=Bordetella pertussis ... [more]
SODF_AERPE3.823e-1343.68Superoxide dismutase [Mn/Fe] OS=Aeropyrum pernix G... [more]
SODM_BORBU6.521e-1338.54Superoxide dismutase [Fe] OS=Borrelia burgdorferi ... [more]
SODF_NICPL6.521e-1346.84Superoxide dismutase [Fe], chloroplastic (Fragment... [more]
SODF_CAMJJ6.521e-1336.84Superoxide dismutase [Fe] OS=Campylobacter jejuni ... [more]
SODF_CAMJE6.521e-1336.84Superoxide dismutase [Fe] OS=Campylobacter jejuni ... [more]
SODF_CAMCO6.521e-1336.84Superoxide dismutase [Fe] OS=Campylobacter coli GN... [more]
SODM_BUCBP8.517e-1347.37Superoxide dismutase [Mn] OS=Buchnera aphidicola s... [more]
SODF_METTH8.517e-1339.77Superoxide dismutase [Fe] OS=Methanobacterium ther... [more]
SODF_PLAMA1.897e-1235.42Superoxide dismutase [Fe] OS=Plasmodium malariae G... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IaR_B11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IaR_B11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304861 ID=CB304861; Name=CB304861; organism=Citrus sinensis; type=EST; length=592bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGAAACCCAATCATACATATT
CACAGATCCGTGCTCATAGTGAGATACAAAAAGAGCATAAACCCCAATAT
TATTTTGGATGTCACATAAGGGATACACAAGTAACACTCACTGCAAAAGA
AAGGGTGTCTGTCATCAGTTGCAAATTATCGTTTTATTGTCACTTCAGCG
TGAAAAGCTGCAAGGGTATTCGCCTCTTGAACCCAAGAGAGAACCCAGAT
CAAACAAAGAACTCCATGCTCAAGGAAGAGCTCCAAGCTTAAGGGCATTC
TTTCTGATACACATCACTAGCATACTTCCAGTTCATTACGTTCCAAACGT
TTTTCAGATAATCTGGTTTGACATTCTTGTACTGTAGGTAGTATGCATGC
TCCCAAACATCTATACCAAGCAAAGGAACCAGAGTTGGGGCTTTAGTCAC
CAGTGGATCCTGATTTGCAGTAGTTTCAACCACAAGCCTTTTGAACTCTG
TATCTAAACCAAGCCACACCCATCCAGAGCCCTGCAAAGCTGCACCCTCA
GCACTCATCTTTTGTATCAATGCTTCCAGAGAACCAAAATGC
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