CB304865

Overview
NameCB304865
Unique NameCB304865
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length615
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304865 vs. ExPASy Swiss-Prot
Match: HAK8_ORYSJ (Putative potassium transporter 8 OS=Oryza sativa subsp. japonica GN=HAK8 PE=2 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.107e-18
Identity = 46/94 (48.94%), Postives = 65/94 (69.15%), Query Frame = -3
Query:  221 RRRQVRFQLPS-----DPGMDPVVREELMDLIQAKEAGIAYIMGHSYVKARRSSSFVKRFMIDILYSFLRKNCRGPSVALNIPPISLIEVGMIY 487
            R +QVRF + S     +   +  V EEL  L  A++AG A+I+GHS+V+ +  SS +KR  +D+ Y+FLR+NCRGP VAL +PP SL+EVGM+Y
Sbjct:  698 RAKQVRFFIDSHVASPEAADNKQVAEELEALAAARDAGTAFILGHSHVQCKPGSSLLKRLAVDVGYNFLRRNCRGPDVALRVPPASLLEVGMVY 791          
BLAST of CB304865 vs. ExPASy Swiss-Prot
Match: POT6_ARATH (Potassium transporter 6 OS=Arabidopsis thaliana GN=POT6 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.888e-18
Identity = 44/90 (48.89%), Postives = 63/90 (70.00%), Query Frame = -3
Query:  215 RRQVRFQLPSDPGMDPVVREELMDLIQAKEAGIAYIMGHSYVKARRSSSFVKRFMIDILYSFLRKNCRGPSVALNIPPISLIEVGMIYYV 484
            +++VRF +P  P ++   R+ELM+L +A+E G+AYIMG++Y+KA+  S  +KR  I+I Y FLR+N RGP   L  P  S +EVGMIY V
Sbjct:  693 KKRVRFVVPETPKIEKETRQELMELTEAREGGVAYIMGNAYMKAKPGSGLLKRLAINIGYEFLRRNTRGPRNMLTSPHASTLEVGMIYNV 782          
BLAST of CB304865 vs. ExPASy Swiss-Prot
Match: HAK9_ORYSJ (Probable potassium transporter 9 OS=Oryza sativa subsp. japonica GN=HAK9 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.465e-18
Identity = 42/88 (47.73%), Postives = 65/88 (73.86%), Query Frame = -3
Query:  221 RQVRFQLPS-DPGMDPVVREELMDLIQAKEAGIAYIMGHSYVKARRSSSFVKRFMIDILYSFLRKNCRGPSVALNIPPISLIEVGMIY 481
            ++VRF + +  P ++  V EEL +L +A+EAG A+I+GHS+V+ +  SS +K+  + + Y+FLR+NCRGP V L +PP SL+EVGM+Y
Sbjct:  699 KKVRFVVEAASPEVEKGVVEELQELCEAREAGTAFILGHSHVQTKPGSSLLKKLAVGVGYNFLRRNCRGPDVVLRVPPASLLEVGMVY 786          
BLAST of CB304865 vs. ExPASy Swiss-Prot
Match: HAK24_ORYSJ (Potassium transporter 24 OS=Oryza sativa subsp. japonica GN=HAK24 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.205e-18
Identity = 42/89 (47.19%), Postives = 65/89 (73.03%), Query Frame = -3
Query:  215 RQVRFQLPSDPGMDPVVREELMDLIQAKEAGIAYIMGHSYVKARRSSSFVKRFMIDILYSFLRKNCRGPSVALNIPPISLIEVGMIYYV 481
            ++VRF LP D  +D  VR EL +L++A+EAG+++I G S++KA+  S  +K+ +I+  Y FLR+N RGP+ A+N+P +S +EVGMI  V
Sbjct:  684 KRVRFALPKDTKIDREVRGELQELMEAREAGMSFITGRSHMKAKSGSGLIKQIVINFGYEFLRRNSRGPAFAVNLPHVSTVEVGMICLV 772          
BLAST of CB304865 vs. ExPASy Swiss-Prot
Match: HAK13_ORYSJ (Probable potassium transporter 13 OS=Oryza sativa subsp. japonica GN=HAK13 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.332e-15
Identity = 43/91 (47.25%), Postives = 61/91 (67.03%), Query Frame = -3
Query:  215 RRQVRFQLPSDPGMDPVVRE-ELMDLIQAKEAGIAYIMGHSYVKARRSSSFVKRFMIDILYSFLRKNCRGPSVALNIPPISLIEVGMIYYV 484
            RR+VRF      G +      E+ +L++ KEAG++Y++GH+ V A  SSS VK+F ++++Y FLR+N R P+V L IP  SLIEVGM Y V
Sbjct:  688 RRKVRFDNDGGGGGEEEEEAAEVKELMEEKEAGVSYMIGHTCVFAHESSSAVKKFAVNVVYGFLRRNSRRPAVVLGIPHTSLIEVGMAYRV 778          
BLAST of CB304865 vs. ExPASy Swiss-Prot
Match: HAK14_ORYSJ (Probable potassium transporter 14 OS=Oryza sativa subsp. japonica GN=HAK14 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.548e-12
Identity = 32/71 (45.07%), Postives = 51/71 (71.83%), Query Frame = -3
Query:  215 EELMDLIQAKEAGIAYIMGHSYVKARRSSSFVKRFMIDILYSFLRKNCRGPSVALNIPPISLIEVGMIYYV 427
            +EL  + +AKE+G+ Y++GH  ++AR+ S FVK+ +I+  Y+FLR+NCR    AL+IPP  +++V M Y V
Sbjct:  789 DELSFIHKAKESGVVYLLGHGDIRARKESFFVKKLVINYFYAFLRRNCRRGIAALSIPPSRMMQVAMQYMV 859          
BLAST of CB304865 vs. ExPASy Swiss-Prot
Match: POT7_ARATH (Potassium transporter 7 OS=Arabidopsis thaliana GN=POT7 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 4.503e-12
Identity = 36/89 (40.45%), Postives = 54/89 (60.67%), Query Frame = -3
Query:  215 PSDPGMDPVVRE-------ELMDLIQAKEAGIAYIMGHSYVKARRSSSFVKRFMIDILYSFLRKNCRGPSVALNIPPISLIEVGMIYYV 460
            P D   D  V E       EL  + +AKE+G+ Y++GH  ++AR+ S F+K+ +I+  Y+FLRKNCR     L++P   L++VGM Y V
Sbjct:  770 PFDTSSDSSVSEAEQSLERELSFIHKAKESGVVYLLGHGDIRARKDSWFIKKLVINYFYTFLRKNCRRGIANLSVPQSHLMQVGMTYMV 858          
BLAST of CB304865 vs. ExPASy Swiss-Prot
Match: POT12_ARATH (Putative potassium transporter 12 OS=Arabidopsis thaliana GN=POT12 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 5.881e-12
Identity = 29/76 (38.16%), Postives = 52/76 (68.42%), Query Frame = -3
Query:  215 DPVVREELMDLIQAKEAGIAYIMGHSYVKARRSSSFVKRFMIDILYSFLRKNCRGPSVALNIPPISLIEVGMIYYV 442
            DP +  EL  L +A ++G+ Y++ H  V+A+++S FVK+ +I+  Y+FLR+NCR  +  L +P +++++ GM Y V
Sbjct:  752 DPALEYELAALREATDSGLTYLLAHGDVRAKKNSIFVKKLVINYFYAFLRRNCRAGAANLTVPHMNILQAGMTYMV 827          
BLAST of CB304865 vs. ExPASy Swiss-Prot
Match: HAK11_ORYSJ (Probable potassium transporter 11 OS=Oryza sativa subsp. japonica GN=HAK11 PE=2 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 5.881e-12
Identity = 32/73 (43.84%), Postives = 50/73 (68.49%), Query Frame = -3
Query:  215 VREELMDLIQAKEAGIAYIMGHSYVKARRSSSFVKRFMIDILYSFLRKNCRGPSVALNIPPISLIEVGMIYYV 433
            V +EL  L + K+AG+ +I+G++ V ARR S  +K+  ++ +Y+F+RK CR  SV  N+P  SL+ VG IYY+
Sbjct:  719 VSDELEFLNRCKDAGVVHILGNTIVLARRDSGIIKKIAVNYMYAFMRKICRENSVIFNVPHESLLNVGQIYYI 791          
BLAST of CB304865 vs. ExPASy Swiss-Prot
Match: POT11_ARATH (Potassium transporter 11 OS=Arabidopsis thaliana GN=POT11 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.003e-11
Identity = 33/71 (46.48%), Postives = 49/71 (69.01%), Query Frame = -3
Query:  215 EELMDLIQAKEAGIAYIMGHSYVKARRSSSFVKRFMIDILYSFLRKNCRGPSVALNIPPISLIEVGMIYYV 427
            +EL  +   ++AG+ +IMG++ V+ARR + F K+  ID +Y+FLRK CR  SV  N+P  SL+ VG I+YV
Sbjct:  722 DELEFINGCRDAGVVHIMGNTVVRARREARFYKKIAIDYVYAFLRKICREHSVIYNVPQESLLNVGQIFYV 792          
The following BLAST results are available for this feature:
BLAST of CB304865 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
HAK8_ORYSJ1.107e-1848.94Putative potassium transporter 8 OS=Oryza sativa s... [more]
POT6_ARATH1.888e-1848.89Potassium transporter 6 OS=Arabidopsis thaliana GN... [more]
HAK9_ORYSJ2.465e-1847.73Probable potassium transporter 9 OS=Oryza sativa s... [more]
HAK24_ORYSJ4.205e-1847.19Potassium transporter 24 OS=Oryza sativa subsp. ja... [more]
HAK13_ORYSJ3.332e-1547.25Probable potassium transporter 13 OS=Oryza sativa ... [more]
HAK14_ORYSJ1.548e-1245.07Probable potassium transporter 14 OS=Oryza sativa ... [more]
POT7_ARATH4.503e-1240.45Potassium transporter 7 OS=Arabidopsis thaliana GN... [more]
POT12_ARATH5.881e-1238.16Putative potassium transporter 12 OS=Arabidopsis t... [more]
HAK11_ORYSJ5.881e-1243.84Probable potassium transporter 11 OS=Oryza sativa ... [more]
POT11_ARATH1.003e-1146.48Potassium transporter 11 OS=Arabidopsis thaliana G... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IaR_C04 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IaR_C04 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304865 ID=CB304865; Name=CB304865; organism=Citrus sinensis; type=EST; length=615bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGGGAGAAAGGAAGCTTCTT
TATGAATTACCTGCAACAAGAGTCTATTTAACATACATGCGTTCAGCTTA
CATTCCACCCCAACAGGAAAGACAAGATGCCTCCTTATGCACCCTCTCAA
AATTATGACTGGCATCGACCAAGGATGATAGACCCTTTTTCATTTTTCAT
AATTTATCTAACTAAACATAGTATATCATGCCAACTTCAATGAGGCTAAT
GGGGGGGATGTTTAGTGCAACAGAAGGGCCCCTGCAGTTCTTCCGAAGAA
ATGAATACAAGATATCAATCATAAACCTTTTCACAAATGAGGATGATCTC
CTAGCCTTCACATAGGAGTGACCCATTATGTAAGCAATTCCAGCTTCCTT
GGCCTGGATCAAATCCATCAGCTCTTCCCTCACTACAGGATCCATTCCAG
GATCTGATGGTAACTGAAACCTCACCTGCCGCCTCCTGACTGGATTATCC
TCATCAAAAACAGATTGCAAACTCTGAAGAGTTAAAGATTTGCTGCTCTG
GATGGAGCTGCTCGAACCAATATCCTCTTCTTGTACAGATATTATCAGGT
TCGTGCTTGATCAAC
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