CB304883

Overview
NameCB304883
Unique NameCB304883
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length515
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304883_ssr156 microsatellite CB304883_ssr156:156..167. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2668 contig Csv1_Contig2668:271..784. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304883 vs. ExPASy Swiss-Prot
Match: NLTP_PYRCO (Non-specific lipid-transfer protein OS=Pyrus communis PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 3.995e-28
Identity = 54/96 (56.25%), Postives = 74/96 (77.08%), Query Frame = -3
Query:  220 VTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 507
            V +AITC QV+ +LAPCI ++R+GG  PP  CCNG++++NG A+TTPDRQAACNCLK    S+ G+N   A  LP +CGV++PYKIS +T+C+ V+
Sbjct:   21 VAHAITCSQVSANLAPCINYVRSGGAVPPA-CCNGIKTINGLAKTTPDRQAACNCLKNLAGSVSGVNPGNAESLPGKCGVNVPYKISTSTNCATVK 115          
BLAST of CB304883 vs. ExPASy Swiss-Prot
Match: NLTP2_SORBI (Non-specific lipid-transfer protein 2 OS=Sorghum bicolor GN=LTP2 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.217e-28
Identity = 56/92 (60.87%), Postives = 69/92 (75.00%), Query Frame = -3
Query:  223 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 498
            A+TCGQV+ ++ PC+++ R  G  P   CC+GVRSLN AARTT DR+AACNCLK A R I G+N   AA +P +CGVSIPY IS +TDCSRV
Sbjct:   30 AVTCGQVSSAIGPCLSYARGQGSGPSAGCCSGVRSLNSAARTTADRRAACNCLKNAARGIRGLNVGKAASIPSKCGVSIPYTISTSTDCSRV 121          
BLAST of CB304883 vs. ExPASy Swiss-Prot
Match: NLTP_MAIZE (Non-specific lipid-transfer protein OS=Zea mays PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 6.814e-28
Identity = 57/92 (61.96%), Postives = 69/92 (75.00%), Query Frame = -3
Query:  223 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 498
            AI+CGQV  ++APCI++ R  G  P   CC+GVRSLN AARTT DR+AACNCLK A   + G+NA  AA +P +CGVSIPY IS +TDCSRV
Sbjct:   28 AISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSIPYTISTSTDCSRV 119          
BLAST of CB304883 vs. ExPASy Swiss-Prot
Match: NLTP2_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 6.814e-28
Identity = 58/94 (61.70%), Postives = 72/94 (76.60%), Query Frame = -3
Query:  220 AITCGQVTGSLAPCIAFLR-TGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 498
            A+T GQVT SLAPCI +LR +G    PP CC G++SLN AA+TTP RQAAC C+K A   I GIN  +A+GLP +CGV+IPYKISP+TDC+ V+
Sbjct:   27 AVTSGQVTNSLAPCINYLRGSGAGAVPPGCCTGIKSLNSAAQTTPVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCNSVK 120          
BLAST of CB304883 vs. ExPASy Swiss-Prot
Match: NLTP1_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 6.814e-28
Identity = 58/94 (61.70%), Postives = 72/94 (76.60%), Query Frame = -3
Query:  220 AITCGQVTGSLAPCIAFLR-TGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 498
            A+T GQVT SLAPCI +LR +G    PP CC G++SLN AA+TTP RQAAC C+K A   I GIN  +A+GLP +CGV+IPYKISP+TDC+ V+
Sbjct:   23 AVTSGQVTNSLAPCINYLRGSGAGAVPPGCCTGIKSLNSAAQTTPVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCNSVK 116          
BLAST of CB304883 vs. ExPASy Swiss-Prot
Match: NLTP1_SORBI (Non-specific lipid-transfer protein 1 OS=Sorghum bicolor GN=LTP1 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 3.382e-27
Identity = 56/92 (60.87%), Postives = 70/92 (76.09%), Query Frame = -3
Query:  223 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 498
            AI+CGQV+ ++A C+++ R  G  P   CC+GVRSLN AARTT DR+AACNCLK A R I G+NA  AA +P +CGVS+PY IS +TDCSRV
Sbjct:   26 AISCGQVSSAIALCLSYARGQGFAPSAGCCSGVRSLNSAARTTADRRAACNCLKNAARGISGLNAGNAASIPSKCGVSVPYTISTSTDCSRV 117          
BLAST of CB304883 vs. ExPASy Swiss-Prot
Match: NLTP5_LENCU (Non-specific lipid-transfer protein 5 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 9.839e-27
Identity = 56/93 (60.22%), Postives = 69/93 (74.19%), Query Frame = -3
Query:  220 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 498
            AI+CG VTG L+PC+ +L TGG  P P CC GV+ L  AA TTPDRQAACNC+K A  SI  +N N AA LP +CGV+IPYKIS +T+C+ V+
Sbjct:   25 AISCGAVTGDLSPCLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCMKSAASSITKLNTNNAAALPGKCGVNIPYKISTSTNCNTVK 116          
BLAST of CB304883 vs. ExPASy Swiss-Prot
Match: NLTP4_LENCU (Non-specific lipid-transfer protein 4 (Fragment) OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 3.739e-26
Identity = 56/93 (60.22%), Postives = 68/93 (73.12%), Query Frame = -3
Query:  220 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 498
            AI+CG VT  L+PC+ +L TGG  P P CC GV+ L  AA TTPDRQAACNCLK A  SI  +N N AA LP +CGV+IPYKIS +T+C+ V+
Sbjct:   18 AISCGAVTSDLSPCLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIPYKISTSTNCNTVK 109          
BLAST of CB304883 vs. ExPASy Swiss-Prot
Match: NLTP6_LENCU (Non-specific lipid-transfer protein 6 OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 4.883e-26
Identity = 56/93 (60.22%), Postives = 67/93 (72.04%), Query Frame = -3
Query:  220 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 498
            AI+CG VT  L+PC+ +L TGG  P P CC GV+ L  AA TTPDRQAACNCLK A  SI  +N N AA LP +CGV IPYKIS +T+C+ V+
Sbjct:   26 AISCGAVTSDLSPCLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVDIPYKISTSTNCNTVK 117          
BLAST of CB304883 vs. ExPASy Swiss-Prot
Match: NLTP3_ARATH (Non-specific lipid-transfer protein 3 OS=Arabidopsis thaliana GN=LTP3 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 4.883e-26
Identity = 53/98 (54.08%), Postives = 71/98 (72.45%), Query Frame = -3
Query:  220 APVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 513
            A V  AI+CG V GSLAPC  +L  GG   PP CC GV++LN  A+TTPDRQ AC C++   +SI G+N ++A+GLP +CGVSIPY IS +T+C+ ++
Sbjct:   19 ASVDAAISCGTVAGSLAPCATYLSKGG-LVPPSCCAGVKTLNSMAKTTPDRQQACRCIQSTAKSISGLNPSLASGLPGKCGVSIPYPISMSTNCNNIK 115          
The following BLAST results are available for this feature:
BLAST of CB304883 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
NLTP_PYRCO3.995e-2856.25Non-specific lipid-transfer protein OS=Pyrus commu... [more]
NLTP2_SORBI5.217e-2860.87Non-specific lipid-transfer protein 2 OS=Sorghum b... [more]
NLTP_MAIZE6.814e-2861.96Non-specific lipid-transfer protein OS=Zea mays PE... [more]
NLTP2_GOSHI6.814e-2861.70Non-specific lipid-transfer protein OS=Gossypium h... [more]
NLTP1_GOSHI6.814e-2861.70Non-specific lipid-transfer protein OS=Gossypium h... [more]
NLTP1_SORBI3.382e-2760.87Non-specific lipid-transfer protein 1 OS=Sorghum b... [more]
NLTP5_LENCU9.839e-2760.22Non-specific lipid-transfer protein 5 OS=Lens culi... [more]
NLTP4_LENCU3.739e-2660.22Non-specific lipid-transfer protein 4 (Fragment) O... [more]
NLTP6_LENCU4.883e-2660.22Non-specific lipid-transfer protein 6 OS=Lens culi... [more]
NLTP3_ARATH4.883e-2654.08Non-specific lipid-transfer protein 3 OS=Arabidops... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IaR_E05 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IaR_E05 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304883 ID=CB304883; Name=CB304883; organism=Citrus sinensis; type=EST; length=515bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTCAAAACACAGATCACGT
TTACATATTTAATATGATATTAAAAGCAAAGATACAAACATGACATGAGA
GTGAGACTCACACAAGTGGAGACTCGTTCGGACAAAGAAATTAACATATA
TATTCTTTATTTATTTATTCTTCTCAGTCAATCATACTTGGAAAGTCACA
GAGCTCTAACTCAACTTCACCTGACCCTAGAGCAGTCAGTGTTGGGGCTG
ATCTTGTAAGGAATGCTGACTCCACATTGACGAGGAAGGCCAGCGGCAAC
ATTAGCGTTGATGCCGGGGATTGATCGGTAAGCTTGCTTCAAGCAGTTGC
ATGCAGCTTGGCGGTCAGGGGTGGTTCTGGCGGCGCCGTTGAGAGACCTG
ACGCCGTTACAGCATGGGGGTGGAGGAAAACGCCCTCCAGTTCTCAAGAA
AGCGATGCATGGAGCCAAGGAGCCTGTCACCTGCCCACATGTTATGGCAT
TAGTCACTGGGGCAG
back to top