CB304883

Overview
NameCB304883
Unique NameCB304883
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length515
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304883_ssr156 microsatellite CB304883_ssr156:156..167. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2668 contig Csv1_Contig2668:271..784. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304883 vs. ExPASy Swiss-Prot
Match: NLTP1_HORVU (Non-specific lipid-transfer protein 1 OS=Hordeum vulgare GN=LTP1 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 4.730e-21
Identity = 44/92 (47.83%), Postives = 61/92 (66.30%), Query Frame = -3
Query:  223 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 498
            A+ CGQV   + PC+ +++ GG  P   CCNGVR L+  A+++ DRQ  CNCLK   R I  +N N AA +P +C V++PY ISP+ DCSR+
Sbjct:   26 ALNCGQVDSKMKPCLTYVQ-GGPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHNLNLNNAASIPSKCNVNVPYTISPDIDCSRI 116          
BLAST of CB304883 vs. ExPASy Swiss-Prot
Match: NLTP2_ARATH (Non-specific lipid-transfer protein 2 OS=Arabidopsis thaliana GN=LTP2 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.054e-20
Identity = 53/100 (53.00%), Postives = 68/100 (68.00%), Query Frame = -3
Query:  220 PVT-NAI-TCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSI-PGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 510
            P+T NA+ +CG V G+LA CIA+L  G       CCNGV +L   A TTPDRQ AC CL+ A +++ PG+N   AAGLP  C V+IPYKIS +T+C+ VR
Sbjct:   20 PITANALMSCGTVNGNLAGCIAYLTRGAPLTQG-CCNGVTNLKNMASTTPDRQQACRCLQSAAKAVGPGLNTARAAGLPSACKVNIPYKISASTNCNTVR 118          
BLAST of CB304883 vs. ExPASy Swiss-Prot
Match: NLTP_AMACA (Non-specific lipid-transfer protein OS=Amaranthus caudatus PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.797e-20
Identity = 46/94 (48.94%), Postives = 61/94 (64.89%), Query Frame = -3
Query:  220 AITCGQVTGSLAPCIAFLRTGGRFPPPP-CCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 498
            A+TC  VT +L PC+ +L+  G  PPP  CC GVRSL  AA+T  DR+ ACNC+K A +    +N  VAA L  QCGV + Y +SPN +C+ V+
Sbjct:    1 AVTCTVVTKALGPCMTYLKGTGATPPPANCCAGVRSLKAAAQTVADRRMACNCMKSAAQKTKSLNYKVAARLASQCGVRMSYSVSPNVNCNSVQ 94          
BLAST of CB304883 vs. ExPASy Swiss-Prot
Match: NLTP1_AMAHP (Non-specific lipid-transfer protein 1 OS=Amaranthus hypochondriacus PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.797e-20
Identity = 46/94 (48.94%), Postives = 61/94 (64.89%), Query Frame = -3
Query:  220 AITCGQVTGSLAPCIAFLRTGGRFPPPP-CCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 498
            A+TC  VT +L PC+ +L+  G  PPP  CC GVRSL  AA+T  DR+ ACNC+K A +    +N  VAA L  QCGV + Y +SPN +C+ V+
Sbjct:    1 AVTCTVVTKALGPCMTYLKGTGATPPPANCCAGVRSLKAAAQTVADRRMACNCMKSAAQKTKSLNYKVAARLASQCGVRMSYSVSPNVNCNSVQ 94          
BLAST of CB304883 vs. ExPASy Swiss-Prot
Match: NLTPC_ARATH (Non-specific lipid-transfer protein 12 OS=Arabidopsis thaliana GN=LTP12 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 4.004e-20
Identity = 46/97 (47.42%), Postives = 61/97 (62.89%), Query Frame = -3
Query:  223 APVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 513
            +P  + I CG VT +LA C+ +L   G  P   CC GV+SL   A+TTPDR+  C CLK A + I G+N ++ A LP  CGVSIPY IS +T+C  +
Sbjct:   20 SPTESTIQCGTVTSTLAQCLTYLTNSGPLPSQ-CCVGVKSLYQLAQTTPDRKQVCECLKLAGKEIKGLNTDLVAALPTTCGVSIPYPISFSTNCDSI 115          
BLAST of CB304883 vs. ExPASy Swiss-Prot
Match: NLTP3_ORYSJ (Non-specific lipid-transfer protein 3 OS=Oryza sativa subsp. japonica GN=LTP110-A PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.987e-19
Identity = 40/92 (43.48%), Postives = 61/92 (66.30%), Query Frame = -3
Query:  223 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 498
            A++CG VT S+APC++++      P   CC+GVR+LNG A ++ DR+ AC+CLK    S   +N   AA +P +CGVS+ + IS + DCS++
Sbjct:   29 AVSCGDVTSSIAPCLSYVMGRESSPSSSCCSGVRTLNGKASSSADRRTACSCLKNMASSFRNLNMGNAASIPSKCGVSVAFPISTSVDCSKI 120          
BLAST of CB304883 vs. ExPASy Swiss-Prot
Match: NLTP3_ORYSI (Non-specific lipid-transfer protein 3 OS=Oryza sativa subsp. indica GN=LTP110-A PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.987e-19
Identity = 40/92 (43.48%), Postives = 61/92 (66.30%), Query Frame = -3
Query:  223 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 498
            A++CG VT S+APC++++      P   CC+GVR+LNG A ++ DR+ AC+CLK    S   +N   AA +P +CGVS+ + IS + DCS++
Sbjct:   29 AVSCGDVTSSIAPCLSYVMGRESSPSSSCCSGVRTLNGKASSSADRRTACSCLKNMASSFRNLNMGNAASIPSKCGVSVAFPISTSVDCSKI 120          
BLAST of CB304883 vs. ExPASy Swiss-Prot
Match: NLTP1_WHEAT (Non-specific lipid-transfer protein (Fragment) OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 2.595e-19
Identity = 44/92 (47.83%), Postives = 62/92 (67.39%), Query Frame = -3
Query:  223 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 498
            AI CG V   + PC+++++ GG  P   CC+GV++L+  AR+  DRQ+ACNCLK   R I  +N + A  +P +CGV++PY IS N DCSRV
Sbjct:   23 AIDCGHVDSLVRPCLSYVQ-GGPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHNLNEDNARSIPPKCGVNLPYTISLNIDCSRV 113          
BLAST of CB304883 vs. ExPASy Swiss-Prot
Match: NLTPB_ARATH (Non-specific lipid-transfer protein 11 OS=Arabidopsis thaliana GN=LTP11 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.288e-18
Identity = 45/92 (48.91%), Postives = 55/92 (59.78%), Query Frame = -3
Query:  223 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 498
            AI C QV   LA C+ +L+ GG  P P CCNG+ SL  AA    DRQ ACNCLK    +IPGIN + A  LP +CGV+I    S   DC+ +
Sbjct:   28 AIACPQVNMYLAQCLPYLKAGGN-PSPMCCNGLNSLKAAAPEKADRQVACNCLKSVANTIPGINDDFAKQLPAKCGVNIGVPFSKTVDCNSI 118          
BLAST of CB304883 vs. ExPASy Swiss-Prot
Match: NLTP5_ARATH (Non-specific lipid-transfer protein 5 OS=Arabidopsis thaliana GN=LTP5 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.747e-18
Identity = 49/94 (52.13%), Postives = 60/94 (63.83%), Query Frame = -3
Query:  220 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPG-INANVAAGLPRQCGVSIPYKISPNTDCSRVR 498
            AI+CG VTGSL  C  +L  GG F P  CC+GV+ LN  ARTT DRQ AC C++ A R++   +NA  AA LP  C V I Y IS  T+C+ VR
Sbjct:   26 AISCGAVTGSLGQCYNYLTRGG-FIPRGCCSGVQRLNSLARTTRDRQQACRCIQGAARALGSRLNAGRAARLPGACRVRISYPISARTNCNTVR 118          
The following BLAST results are available for this feature:
BLAST of CB304883 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
NLTP1_HORVU4.730e-2147.83Non-specific lipid-transfer protein 1 OS=Hordeum v... [more]
NLTP2_ARATH1.054e-2053.00Non-specific lipid-transfer protein 2 OS=Arabidops... [more]
NLTP_AMACA1.797e-2048.94Non-specific lipid-transfer protein OS=Amaranthus ... [more]
NLTP1_AMAHP1.797e-2048.94Non-specific lipid-transfer protein 1 OS=Amaranthu... [more]
NLTPC_ARATH4.004e-2047.42Non-specific lipid-transfer protein 12 OS=Arabidop... [more]
NLTP3_ORYSJ1.987e-1943.48Non-specific lipid-transfer protein 3 OS=Oryza sat... [more]
NLTP3_ORYSI1.987e-1943.48Non-specific lipid-transfer protein 3 OS=Oryza sat... [more]
NLTP1_WHEAT2.595e-1947.83Non-specific lipid-transfer protein (Fragment) OS=... [more]
NLTPB_ARATH1.288e-1848.91Non-specific lipid-transfer protein 11 OS=Arabidop... [more]
NLTP5_ARATH3.747e-1852.13Non-specific lipid-transfer protein 5 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IaR_E05 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IaR_E05 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304883 ID=CB304883; Name=CB304883; organism=Citrus sinensis; type=EST; length=515bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTCAAAACACAGATCACGT
TTACATATTTAATATGATATTAAAAGCAAAGATACAAACATGACATGAGA
GTGAGACTCACACAAGTGGAGACTCGTTCGGACAAAGAAATTAACATATA
TATTCTTTATTTATTTATTCTTCTCAGTCAATCATACTTGGAAAGTCACA
GAGCTCTAACTCAACTTCACCTGACCCTAGAGCAGTCAGTGTTGGGGCTG
ATCTTGTAAGGAATGCTGACTCCACATTGACGAGGAAGGCCAGCGGCAAC
ATTAGCGTTGATGCCGGGGATTGATCGGTAAGCTTGCTTCAAGCAGTTGC
ATGCAGCTTGGCGGTCAGGGGTGGTTCTGGCGGCGCCGTTGAGAGACCTG
ACGCCGTTACAGCATGGGGGTGGAGGAAAACGCCCTCCAGTTCTCAAGAA
AGCGATGCATGGAGCCAAGGAGCCTGTCACCTGCCCACATGTTATGGCAT
TAGTCACTGGGGCAG
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