CB304883

Overview
NameCB304883
Unique NameCB304883
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length515
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304883_ssr156 microsatellite CB304883_ssr156:156..167. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2668 contig Csv1_Contig2668:271..784. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB304883 vs. ExPASy Swiss-Prot
Match: NLT11_PARJU (Probable non-specific lipid-transfer protein (Fragment) OS=Parietaria judaica GN=PMAI PE=1 SV=3)

HSP 1 Score: 67.0106 bits (162), Expect = 5.795e-11
Identity = 30/93 (32.26%), Postives = 52/93 (55.91%), Query Frame = -3 
Query:  223 TCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISP---NTDCSRV 492
            TCG +  +L PC+ F++   + P   CC+G + L+G  +T P R  AC C++ A ++   I+  + + +P+ CG+ +  K+ P   N DC  V
Sbjct:    3 TCGTMVRALMPCLPFVQGKEKEPSKGCCSGAKRLDGETKTGPQRVHACECIQTAMKTYSDIDGKLVSEVPKHCGI-VDSKLPPIDVNMDCKTV 94
The following BLAST results are available for this feature:
BLAST of CB304883 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
NLT11_PARJU5.795e-1132.26Probable non-specific lipid-transfer protein (Frag... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IaR_E05 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IaR_E05 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304883 ID=CB304883; Name=CB304883; organism=Citrus sinensis; type=EST; length=515bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTCAAAACACAGATCACGT
TTACATATTTAATATGATATTAAAAGCAAAGATACAAACATGACATGAGA
GTGAGACTCACACAAGTGGAGACTCGTTCGGACAAAGAAATTAACATATA
TATTCTTTATTTATTTATTCTTCTCAGTCAATCATACTTGGAAAGTCACA
GAGCTCTAACTCAACTTCACCTGACCCTAGAGCAGTCAGTGTTGGGGCTG
ATCTTGTAAGGAATGCTGACTCCACATTGACGAGGAAGGCCAGCGGCAAC
ATTAGCGTTGATGCCGGGGATTGATCGGTAAGCTTGCTTCAAGCAGTTGC
ATGCAGCTTGGCGGTCAGGGGTGGTTCTGGCGGCGCCGTTGAGAGACCTG
ACGCCGTTACAGCATGGGGGTGGAGGAAAACGCCCTCCAGTTCTCAAGAA
AGCGATGCATGGAGCCAAGGAGCCTGTCACCTGCCCACATGTTATGGCAT
TAGTCACTGGGGCAG
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