CB304892

Overview
NameCB304892
Unique NameCB304892
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length618
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2659 contig Csv1_Contig2659:123..740. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_ACIC1 (50S ribosomal protein L14 OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) GN=rplN PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.552e-12
Identity = 41/99 (41.41%), Postives = 60/99 (60.61%), Query Frame = -3
Query:  245 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 532
            ADNTGA+ +  I V G  GR      A +GD+++ATVK   P    K   V+ AV+VR  K  RR DG ++ F++NA V++   G+ +G+ I GP+G+E
Sbjct:   11 ADNTGAREILCIRVLGGSGRRY----AGIGDVIIATVKDALPGAGVKKGDVVKAVVVRTAKERRRPDGSYIKFDENAAVLIKDGGDPRGTRIFGPVGRE 105          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RK14_RHDSA (50S ribosomal protein L14, chloroplastic OS=Rhodomonas salina GN=rpl14 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.552e-12
Identity = 38/105 (36.19%), Postives = 63/105 (60.00%), Query Frame = -3
Query:  236 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 541
            +N ADN+GAK +  I + G   +      A +GD+++  VK   P++   R  V+ AV++R +K  RR+DG+ + F+DNA VI+N +   +G+ + GPI +E  D
Sbjct:    8 LNVADNSGAKKIMCIRILGGNKKY-----ASIGDVIIGVVKDATPNMPVKRADVVRAVVMRTKKTVRRQDGMSIRFDDNAAVIINKENNPRGTRVFGPIARELRD 107          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RK14_OLTVI (50S ribosomal protein L14, chloroplastic OS=Oltmannsiellopsis viridis GN=rpl14 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.552e-12
Identity = 40/102 (39.22%), Postives = 61/102 (59.80%), Query Frame = -3
Query:  245 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 541
            VN ADN+GA+ L  I V     +     SA +GD ++A VK+  P++  K   ++ AVIVR  K  RR DG  + F+DNA V++N +G  +G+ + GP+ +E
Sbjct:    8 VNVADNSGARKLMCIRVLDASFK----QSANIGDTIIAVVKEAIPNMPLKKSDIVRAVIVRSAKGIRRPDGTIIRFDDNAAVVINKEGNPRGTRVFGPVARE 105          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RK14_MESVI (50S ribosomal protein L14, chloroplastic OS=Mesostigma viride GN=rpl14 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.552e-12
Identity = 39/105 (37.14%), Postives = 63/105 (60.00%), Query Frame = -3
Query:  236 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 541
            +N ADN+GAK +  I V G   R      A +GD+++  VK   P++   + +V+ AV+VR  K  RR++G+ + F+DNA V++N  G  KG+ + GP+ +E  D
Sbjct:    8 LNVADNSGAKKIMCIRVLGGSQR----KYAAIGDVIIGVVKDSVPNMSLKKSEVVRAVVVRTCKGIRRENGMTIRFDDNAAVVINKDGNPKGTRVFGPVARELRD 108          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RK14_LOLPR (50S ribosomal protein L14, chloroplastic OS=Lolium perenne GN=rpl14 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.552e-12
Identity = 40/106 (37.74%), Postives = 64/106 (60.38%), Query Frame = -3
Query:  233 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECADL 541
            +N ADN+GA+ L  I V G  G       A +GD+++A +K   P +   R +V+ AVIVR  K ++ +DG+ + ++DNA VI++ KG  KG+ + G I +E  +L
Sbjct:    8 LNVADNSGARKLMCIRVIGAAGNQRY---ARIGDVIVAVIKDALPQMPLERSEVIRAVIVRTCKEFKCEDGIIIRYDDNAAVIIDQKGNPKGTRVFGAIAEELREL 110          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RK14_HORVU (50S ribosomal protein L14, chloroplastic OS=Hordeum vulgare GN=rpl14 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.552e-12
Identity = 40/106 (37.74%), Postives = 64/106 (60.38%), Query Frame = -3
Query:  233 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECADL 541
            +N ADN+GA+ L  I V G  G       A +GD+++A +K   P +   R +V+ AVIVR  K ++ +DG+ + ++DNA VI++ KG  KG+ + G I +E  +L
Sbjct:    8 LNVADNSGARKLMCIRVIGAAGNQRY---ARIGDVIVAVIKDALPQMPLERSEVIRAVIVRTCKEFKCEDGIIIRYDDNAAVIIDQKGNPKGTRVFGAIAEELREL 110          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RK14_AGRST (50S ribosomal protein L14, chloroplastic OS=Agrostis stolonifera GN=rpl14 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.552e-12
Identity = 40/106 (37.74%), Postives = 64/106 (60.38%), Query Frame = -3
Query:  233 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECADL 541
            +N ADN+GA+ L  I V G  G       A +GD+++A +K   P +   R +V+ AVIVR  K ++ +DG+ + ++DNA VI++ KG  KG+ + G I +E  +L
Sbjct:    8 LNVADNSGARKLMCIRVIGAAGNQRY---ARIGDVIVAVIKDALPQMPLERSEVIRAVIVRTCKEFKCEDGIIIRYDDNAAVIIDQKGNPKGTRVFGAIAEELREL 110          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_SYNY3 (50S ribosomal protein L14 OS=Synechocystis sp. (strain PCC 6803) GN=rplN PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.945e-12
Identity = 38/105 (36.19%), Postives = 61/105 (58.10%), Query Frame = -3
Query:  236 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 541
            +N ADN+GA+ L  + V G            +GD ++A VK   P++   +  V+ AVIVR ++P RR  G+ + F+DNA VI+N +G  +G+ + GP+ +E  D
Sbjct:    8 LNVADNSGARKLMCLRVLGT----GNCTYGGIGDQIIAVVKDALPNMPIKKSDVVRAVIVRTKQPLRRASGMSIRFDDNAAVIINAEGNPRGTRVFGPVARELRD 108          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_SYNP2 (50S ribosomal protein L14 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rplN PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.945e-12
Identity = 40/105 (38.10%), Postives = 61/105 (58.10%), Query Frame = -3
Query:  236 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 541
            +N ADN+GA+ L  + V              +GD ++A VK+  P++  K   V+ AVIVR R+P RR  G+ + F+DNA VI+N +G  KG+ + GP+ +E  D
Sbjct:    8 LNVADNSGARKLMCLRVLST----GNCRYGGIGDQIIAVVKEAIPNMGVKKSDVVRAVIVRTRQPLRRASGMSIRFDDNAAVIINAEGNPKGTRVFGPVARELRD 108          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_PELTS (50S ribosomal protein L14 OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=rplN PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.945e-12
Identity = 43/111 (38.74%), Postives = 65/111 (58.56%), Query Frame = -3
Query:  236 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 559
            + V + +N ADNTGA+ L  I V G  G L R  S  VGD+++ +VK+  P     +  V+ AV+VR +K  RR DG ++ F++NA VI+      +G+ I GP+ +E  D
Sbjct:    2 IQVQSILNVADNTGARRLMCIRVLG--GALRRYAS--VGDIIVCSVKEATPGGVVKKGDVVRAVVVRTKKEVRRPDGSYIKFDENAAVIIKDDKSPRGTRIFGPVARELRD 108          
The following BLAST results are available for this feature:
BLAST of CB304892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 356
Match NameE-valueIdentityDescription
RL14_ACIC14.552e-1241.4150S ribosomal protein L14 OS=Acidothermus cellulol... [more]
RK14_RHDSA4.552e-1236.1950S ribosomal protein L14, chloroplastic OS=Rhodom... [more]
RK14_OLTVI4.552e-1239.2250S ribosomal protein L14, chloroplastic OS=Oltman... [more]
RK14_MESVI4.552e-1237.1450S ribosomal protein L14, chloroplastic OS=Mesost... [more]
RK14_LOLPR4.552e-1237.7450S ribosomal protein L14, chloroplastic OS=Lolium... [more]
RK14_HORVU4.552e-1237.7450S ribosomal protein L14, chloroplastic OS=Hordeu... [more]
RK14_AGRST4.552e-1237.7450S ribosomal protein L14, chloroplastic OS=Agrost... [more]
RL14_SYNY35.945e-1236.1950S ribosomal protein L14 OS=Synechocystis sp. (st... [more]
RL14_SYNP25.945e-1238.1050S ribosomal protein L14 OS=Synechococcus sp. (st... [more]
RL14_PELTS5.945e-1238.7450S ribosomal protein L14 OS=Pelotomaculum thermop... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IaR_F07 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IaR_F07 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304892 ID=CB304892; Name=CB304892; organism=Citrus sinensis; type=EST; length=618bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGATCAACAAAACTCCAAA
CTTTCATACCACTTACAAAACTAGAATAACAAAATCATACAGAAAGTTCA
CAGAAAAGCTTTACTCCTTCCTACTATGAAACTTCACCAGATTTCTTTTT
AGTGCAACAAAAAGGATGATATAGGTTATCGGTCTTGAATGGCTTAAACG
ATAGCATTGGCTGCACTTGCAATTCTCGGCCACAAATCAGCACACTCTTT
ACCAATTGGACCGGGGATGGCAGAACCCTTCATTTCTCCCTTTGGATTCA
CAATAACACCAGCATTATCTTCAAAGTACATGAAGACACCATCCTTTCTG
CGCCATGGCTTGCGCTGCCTTACAATGACGGCGGGCATCACCTTCTTCCT
AAGATCAGGCTTCCCTTTCTTCACGGTAGCCATAACCATGTCTCCAACAC
AGGCAGACGGCAAACGGTTGAGGCGACCTTTGATTCCCTTAACTGAGATG
ATGTAAAGGTTCTTTGCCCCAGTGTTGTCAGCACAGTTCACAGTTGCTGC
CACTGGCAAACCCAGTGACATCCTGAACTTGTTACCTGCTGATCCTCCAC
GTCCTCGCTTCGACATTT
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