CB304892

Overview
NameCB304892
Unique NameCB304892
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length618
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2659 contig Csv1_Contig2659:123..740. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_KOSOT (50S ribosomal protein L14 OS=Kosmotoga olearia (strain TBF 19.5.1) GN=rplN PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.945e-12
Identity = 38/99 (38.38%), Postives = 65/99 (65.66%), Query Frame = -3
Query:  245 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKP--DLRK-KVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 532
            ADN+GAK + +I V G   R     +  +GD+V+A+V++  P  D++K  ++ AV+VR +K  RR DG ++ F+DNA VI++ + + KG+ + GP+ +E
Sbjct:   11 ADNSGAKVIKVIQVSGGSKR----KTGSIGDIVVASVREAVPNTDIKKGDIVRAVVVRTKKEIRRPDGTYIRFDDNAAVIIDKQNQPKGTRVFGPVARE 105          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_FLAJ1 (50S ribosomal protein L14 OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=rplN PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.945e-12
Identity = 42/99 (42.42%), Postives = 60/99 (60.61%), Query Frame = -3
Query:  245 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 532
            ADNTGAK +  I V G  G   R  S  VGD ++ ++K   P+   K   V  AV+VR +K  RR DG ++ F+DNA V++N  GEM+G+ + GP+ +E
Sbjct:   11 ADNTGAKEVLTIRVLG--GTKRRYAS--VGDKIVVSIKDATPNGNVKKGAVSTAVVVRTKKEVRRADGSYIRFDDNACVLLNAAGEMRGTRVFGPVARE 105          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_CORA7 (50S ribosomal protein L14 OS=Corynebacterium aurimucosum (strain ATCC 700975 / DSM 44827 / CN-1) GN=rplN PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.945e-12
Identity = 43/102 (42.16%), Postives = 63/102 (61.76%), Query Frame = -3
Query:  236 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 532
            ADN+GA+ L +I V G  G + R   A +GD+V+ATVK+  P    K   ++ AVIVR +K  RR DG ++ F++NA VI+    E +G+ I GP+ +E  D
Sbjct:   11 ADNSGARELLVIRVLG--GSVRRF--AGIGDIVVATVKEAIPGGNVKEGDIVKAVIVRAKKETRRPDGSYIAFDENAAVILKGDNEPRGTRIFGPVARELRD 108          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_AMOA5 (50S ribosomal protein L14 OS=Amoebophilus asiaticus (strain 5a2) GN=rplN PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.945e-12
Identity = 42/102 (41.18%), Postives = 63/102 (61.76%), Query Frame = -3
Query:  245 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKP--DLRK-KVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 541
            +N ADN+GAK +  I V G  G   R  S  VGD ++ +VK   P  +++K  V  AV+VR +K  RRKDG ++ F+DNA V++    E++G+ I GP+ +E
Sbjct:    8 LNVADNSGAKQVQCIRVLG--GTKKRYAS--VGDRIVVSVKSASPAGNIKKGAVSKAVVVRTKKEVRRKDGSYIRFDDNAAVLLQNNDELRGTRISGPVARE 105          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_SULNB (50S ribosomal protein L14 OS=Sulfurovum sp. (strain NBC37-1) GN=rplN PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.765e-12
Identity = 43/102 (42.16%), Postives = 64/102 (62.75%), Query Frame = -3
Query:  245 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 541
            +N ADN+GAK +  I V G  G   R  S  VGD+++A+VKK  P     + KV+ AV+VR +K  +R++G  + F+DNA VI++ K E  G+ I GP+ +E
Sbjct:    8 LNVADNSGAKEIMCIKVLG--GSKRRYAS--VGDVIVASVKKALPTGKVKKGKVVKAVVVRTKKEIQRENGSLIRFDDNAAVIIDDKKEPIGTRIFGPVSRE 105          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_LAWIP (50S ribosomal protein L14 OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=rplN PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.765e-12
Identity = 43/108 (39.81%), Postives = 66/108 (61.11%), Query Frame = -3
Query:  245 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 559
            + V +T+  ADN+GAK +  I V G  G   R   A VGD+++ +VK+  P  + K   V+ AVIVR +K  RR DG ++ F+ NA V+++ +GE  G+ I GP+ +E
Sbjct:    2 IQVESTLQVADNSGAKKVACIKVLG--GSKRRY--ATVGDIIVVSVKEAIPHSKVKKGEVLQAVIVRTKKEVRRMDGSYIKFDSNAAVLLSKQGEPVGTRIFGPVARE 105          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_LACSS (50S ribosomal protein L14 OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=rplN PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.765e-12
Identity = 40/102 (39.22%), Postives = 62/102 (60.78%), Query Frame = -3
Query:  236 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 532
            ADN+GA+ +  I V G  GR     +A +GD+++AT+K+  P     + +V+ AVIVR +   RR DG ++ F++NA VI+N     KG+ I GP+ +E  D
Sbjct:   11 ADNSGAREILTIKVLGGSGR----KTANIGDVIVATIKQATPGGVVKKGEVVKAVIVRTKSGARRVDGSYIKFDENAAVIINDDKTPKGTRIFGPVARELRD 108          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_DESDG (50S ribosomal protein L14 OS=Desulfovibrio desulfuricans (strain G20) GN=rplN PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.765e-12
Identity = 43/108 (39.81%), Postives = 64/108 (59.26%), Query Frame = -3
Query:  245 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 559
            + V + +  ADN+GAK +  I V G  G   R  S  VGD+++ +VK+  P  + K   VM AV+VR  K  RR DG ++ F+ NA V++N +GE  G+ I GP+ +E
Sbjct:    2 IQVESALQVADNSGAKKVACIKVLG--GSKRRYAS--VGDVIVVSVKEALPHSKVKKGDVMKAVVVRTAKEIRRNDGSYIKFDTNAAVLLNKQGEPVGTRIFGPVARE 105          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_CORU7 (50S ribosomal protein L14 OS=Corynebacterium urealyticum (strain ATCC 43042 / DSM 7109) GN=rplN PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.765e-12
Identity = 42/103 (40.78%), Postives = 65/103 (63.11%), Query Frame = -3
Query:  245 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPK-GEMKGSAIPGPIGKE 541
            V  ADN+GA+ + +I V G  G + R  SA +GD+V+ATVK+  P       +++ AVIVR +KP RR DG ++ F++NA VI+     + +G+ I GP+ +E
Sbjct:    8 VRVADNSGAREILVIRVLG--GSVKR--SAGIGDVVVATVKEAAPGGTVKENEIVRAVIVRTKKPTRRPDGSYIAFDENAAVIIKANDNDPRGTRIFGPVARE 106          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_CHLTE (50S ribosomal protein L14 OS=Chlorobium tepidum GN=rplN PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.765e-12
Identity = 42/102 (41.18%), Postives = 61/102 (59.80%), Query Frame = -3
Query:  236 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 532
            ADN+GAK +  I V G  GR      A +GD +M +VK   P     +K V  AV+VR  K  +RKDG ++ F++NA V++N +GE +G+ I GP+ +E  D
Sbjct:   11 ADNSGAKKVRCIHVFGGTGRRY----AALGDQIMVSVKAAVPGGVVKKKDVCKAVVVRCVKEQKRKDGSYIRFDENAVVLLNAQGEPRGTRIFGPVARELRD 108          
The following BLAST results are available for this feature:
BLAST of CB304892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 356
Match NameE-valueIdentityDescription
RL14_KOSOT5.945e-1238.3850S ribosomal protein L14 OS=Kosmotoga olearia (st... [more]
RL14_FLAJ15.945e-1242.4250S ribosomal protein L14 OS=Flavobacterium johnso... [more]
RL14_CORA75.945e-1242.1650S ribosomal protein L14 OS=Corynebacterium aurim... [more]
RL14_AMOA55.945e-1241.1850S ribosomal protein L14 OS=Amoebophilus asiaticu... [more]
RL14_SULNB7.765e-1242.1650S ribosomal protein L14 OS=Sulfurovum sp. (strai... [more]
RL14_LAWIP7.765e-1239.8150S ribosomal protein L14 OS=Lawsonia intracellula... [more]
RL14_LACSS7.765e-1239.2250S ribosomal protein L14 OS=Lactobacillus sakei s... [more]
RL14_DESDG7.765e-1239.8150S ribosomal protein L14 OS=Desulfovibrio desulfu... [more]
RL14_CORU77.765e-1240.7850S ribosomal protein L14 OS=Corynebacterium ureal... [more]
RL14_CHLTE7.765e-1241.1850S ribosomal protein L14 OS=Chlorobium tepidum GN... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IaR_F07 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IaR_F07 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304892 ID=CB304892; Name=CB304892; organism=Citrus sinensis; type=EST; length=618bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGATCAACAAAACTCCAAA
CTTTCATACCACTTACAAAACTAGAATAACAAAATCATACAGAAAGTTCA
CAGAAAAGCTTTACTCCTTCCTACTATGAAACTTCACCAGATTTCTTTTT
AGTGCAACAAAAAGGATGATATAGGTTATCGGTCTTGAATGGCTTAAACG
ATAGCATTGGCTGCACTTGCAATTCTCGGCCACAAATCAGCACACTCTTT
ACCAATTGGACCGGGGATGGCAGAACCCTTCATTTCTCCCTTTGGATTCA
CAATAACACCAGCATTATCTTCAAAGTACATGAAGACACCATCCTTTCTG
CGCCATGGCTTGCGCTGCCTTACAATGACGGCGGGCATCACCTTCTTCCT
AAGATCAGGCTTCCCTTTCTTCACGGTAGCCATAACCATGTCTCCAACAC
AGGCAGACGGCAAACGGTTGAGGCGACCTTTGATTCCCTTAACTGAGATG
ATGTAAAGGTTCTTTGCCCCAGTGTTGTCAGCACAGTTCACAGTTGCTGC
CACTGGCAAACCCAGTGACATCCTGAACTTGTTACCTGCTGATCCTCCAC
GTCCTCGCTTCGACATTT
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