CB304892

Overview
NameCB304892
Unique NameCB304892
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length618
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2659 contig Csv1_Contig2659:123..740. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_TREPA (50S ribosomal protein L14 OS=Treponema pallidum GN=rplN PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.324e-11
Identity = 42/112 (37.50%), Postives = 63/112 (56.25%), Query Frame = -3
Query:  233 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECADL 559
            + V + +N ADN+GA+ +  I V G     +R   A VGD+++  VK   P     +  V  AVIVR  K +RR DG ++ F+DNA V+++  G  KG  I GP+ +E  D+
Sbjct:    2 IQVQSRLNVADNSGARLVQCIKVVGG----SRRRYASVGDIIVVAVKDALPTSVIKKGSVEKAVIVRVSKEYRRVDGTYIRFDDNACVVIDANGNPKGKRIFGPVARELRDM 109          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_RHOE4 (50S ribosomal protein L14 OS=Rhodococcus erythropolis (strain PR4 / NBRC 100887) GN=rplN PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.324e-11
Identity = 42/102 (41.18%), Postives = 63/102 (61.76%), Query Frame = -3
Query:  245 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKP--DLRK-KVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 541
            V  ADNTGAK +  I V G   R      A +GD+++ATVK   P  +++K +V+ AVIVR  K  RR DG ++ F++NA V++    + +G+ I GP+G+E
Sbjct:    8 VRVADNTGAKEILCIRVLGGSSRRY----AGIGDVIVATVKDAIPGGNIKKGEVVKAVIVRTTKERRRPDGSYIKFDENAAVLIKADSDPRGTRIFGPVGRE 105          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_GLOVI (50S ribosomal protein L14 OS=Gloeobacter violaceus GN=rplN PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.324e-11
Identity = 43/110 (39.09%), Postives = 66/110 (60.00%), Query Frame = -3
Query:  245 VNCADNTGAKNLYIISVKG--------IKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 541
            ++ ADNTGA+ L  I V G         KG  NR   A VGD+V+A VK   P++   + +V+ AV+VR R+  RR +G+ + F+DNA VI++  G  +G+ + GP+ +E
Sbjct:    8 LSVADNTGARELLCIRVLGSTVGSKGLTKGGGNRR-YAFVGDIVVAVVKDAAPNMGVKKSEVVRAVVVRTRQAIRRDNGMVIRFDDNAAVIIDKNGNPRGTRVFGPVARE 116          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_FLAPJ (50S ribosomal protein L14 OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=rplN PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.324e-11
Identity = 42/99 (42.42%), Postives = 60/99 (60.61%), Query Frame = -3
Query:  245 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 532
            ADNTGAK +  I V G  G   R  S  VGD ++ ++K   P+   K   V  AV+VR +K  RR DG ++ F+DNA V++N  GEM+G+ + GP+ +E
Sbjct:   11 ADNTGAKEVLTIRVLG--GTKRRYAS--VGDKIVVSIKDTAPNGSVKKGSVSTAVVVRTKKEVRRADGSYIRFDDNACVLLNAAGEMRGTRVFGPVARE 105          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_DESDA (50S ribosomal protein L14 OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) GN=rplN PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.324e-11
Identity = 44/108 (40.74%), Postives = 64/108 (59.26%), Query Frame = -3
Query:  245 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 559
            + V +T+  ADN+GAK +  I V G   R      A VGD+V+ +VK+  P  + K   VM AVIVR  K  RR DG ++ F+ NA V+++ +GE  G+ I GP+ +E
Sbjct:    2 IQVESTLQVADNSGAKKVACIKVLGGSHRRY----ASVGDIVVVSVKEAIPHSKVKKGDVMKAVIVRTAKEVRRMDGSYIKFDGNAAVLLSTQGEPIGTRIFGPVARE 105          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_CORK4 (50S ribosomal protein L14 OS=Corynebacterium kroppenstedtii (strain DSM 44385 / CCUG 35717) GN=rplN PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.324e-11
Identity = 41/102 (40.20%), Postives = 61/102 (59.80%), Query Frame = -3
Query:  236 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 532
            ADNTGA+ +  I V G  G   R   A +GD+++ATVK+  P    K   ++ AVIVR +K  RR DG ++ F++NA V++    E +G+ I GP+ +E  D
Sbjct:   11 ADNTGAREILCIRVLG--GSTRRF--AGIGDVIVATVKEATPGGNVKAGDIVKAVIVRAKKETRRPDGSYIRFDENAAVLIRNDNEPRGTRIFGPVARELRD 108          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_CHLPD (50S ribosomal protein L14 OS=Chlorobium phaeobacteroides (strain DSM 266) GN=rplN PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.324e-11
Identity = 41/102 (40.20%), Postives = 61/102 (59.80%), Query Frame = -3
Query:  236 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 532
            ADN+GAK +  I V G  GR      A +GD ++ ++K   P     +K V  AV+VR  K  RRKDG ++ F++NA V++N +GE +G+ I GP+ +E  D
Sbjct:   11 ADNSGAKKVRCIHVFGGTGRRY----AALGDQIIVSIKAAVPGGVVKKKDVCKAVVVRCVKEQRRKDGSYIRFDENAVVLLNAQGEPRGTRIFGPVARELRD 108          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_ARCB4 (50S ribosomal protein L14 OS=Arcobacter butzleri (strain RM4018) GN=rplN PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.324e-11
Identity = 44/102 (43.14%), Postives = 63/102 (61.76%), Query Frame = -3
Query:  245 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 541
            +N ADNTGAK +  I V G  G   R   A VGD+++A+VKK  P  + K   V+ AV+VR  K  +R++G  + F+DNA VI++ K E  G+ I GP+ +E
Sbjct:    8 LNVADNTGAKEIMCIKVLG--GSKRRY--ATVGDVIVASVKKALPTGKIKKGQVVKAVVVRTHKEVQRENGSLIRFDDNAAVILDAKREPVGTRIFGPVARE 105          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_ACIBL (50S ribosomal protein L14 OS=Acidobacteria bacterium (strain Ellin345) GN=rplN PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.324e-11
Identity = 42/110 (38.18%), Postives = 64/110 (58.18%), Query Frame = -3
Query:  245 LGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 565
            + + +   +  ADN+GA+ L +I+  G  G    +  A +GD+V A VK+  PD   K   V+ AVIVR  K  RRKDG ++ F+ NA V++N  GE  G+ + GP+ +E
Sbjct:    1 MAVQMRTMLEVADNSGARKLQMINPLG--GGAGHV--AHLGDVVTAAVKEASPDGTAKKGTVVKAVIVRTHKEHRRKDGTYIRFDTNAAVLINDTGEPVGTRVFGPVARE 106          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RK14_THAPS (50S ribosomal protein L14, chloroplastic OS=Thalassiosira pseudonana GN=rpl14 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.324e-11
Identity = 38/102 (37.25%), Postives = 60/102 (58.82%), Query Frame = -3
Query:  236 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 532
            ADNTGAK +  I V G   +  +     +GD ++  VK+  P++   +  V+ A+IVR  K  RR DG+++ F+DNA VIVN +   +G+ + GP+ +E  D
Sbjct:   11 ADNTGAKKIMCIRVLGGNRKYGK-----IGDTIIGVVKEAIPNMPIKKSDVVRAIIVRTSKTIRRADGMYIRFDDNAAVIVNMENNPRGTRVFGPVAREIRD 107          
The following BLAST results are available for this feature:
BLAST of CB304892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 356
Match NameE-valueIdentityDescription
RL14_TREPA1.324e-1137.5050S ribosomal protein L14 OS=Treponema pallidum GN... [more]
RL14_RHOE41.324e-1141.1850S ribosomal protein L14 OS=Rhodococcus erythropo... [more]
RL14_GLOVI1.324e-1139.0950S ribosomal protein L14 OS=Gloeobacter violaceus... [more]
RL14_FLAPJ1.324e-1142.4250S ribosomal protein L14 OS=Flavobacterium psychr... [more]
RL14_DESDA1.324e-1140.7450S ribosomal protein L14 OS=Desulfovibrio desulfu... [more]
RL14_CORK41.324e-1140.2050S ribosomal protein L14 OS=Corynebacterium kropp... [more]
RL14_CHLPD1.324e-1140.2050S ribosomal protein L14 OS=Chlorobium phaeobacte... [more]
RL14_ARCB41.324e-1143.1450S ribosomal protein L14 OS=Arcobacter butzleri (... [more]
RL14_ACIBL1.324e-1138.1850S ribosomal protein L14 OS=Acidobacteria bacteri... [more]
RK14_THAPS1.324e-1137.2550S ribosomal protein L14, chloroplastic OS=Thalas... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IaR_F07 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IaR_F07 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304892 ID=CB304892; Name=CB304892; organism=Citrus sinensis; type=EST; length=618bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGATCAACAAAACTCCAAA
CTTTCATACCACTTACAAAACTAGAATAACAAAATCATACAGAAAGTTCA
CAGAAAAGCTTTACTCCTTCCTACTATGAAACTTCACCAGATTTCTTTTT
AGTGCAACAAAAAGGATGATATAGGTTATCGGTCTTGAATGGCTTAAACG
ATAGCATTGGCTGCACTTGCAATTCTCGGCCACAAATCAGCACACTCTTT
ACCAATTGGACCGGGGATGGCAGAACCCTTCATTTCTCCCTTTGGATTCA
CAATAACACCAGCATTATCTTCAAAGTACATGAAGACACCATCCTTTCTG
CGCCATGGCTTGCGCTGCCTTACAATGACGGCGGGCATCACCTTCTTCCT
AAGATCAGGCTTCCCTTTCTTCACGGTAGCCATAACCATGTCTCCAACAC
AGGCAGACGGCAAACGGTTGAGGCGACCTTTGATTCCCTTAACTGAGATG
ATGTAAAGGTTCTTTGCCCCAGTGTTGTCAGCACAGTTCACAGTTGCTGC
CACTGGCAAACCCAGTGACATCCTGAACTTGTTACCTGCTGATCCTCCAC
GTCCTCGCTTCGACATTT
back to top