CB304892
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_TREPA (50S ribosomal protein L14 OS=Treponema pallidum GN=rplN PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.324e-11 Identity = 42/112 (37.50%), Postives = 63/112 (56.25%), Query Frame = -3 Query: 233 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECADL 559 + V + +N ADN+GA+ + I V G +R A VGD+++ VK P + V AVIVR K +RR DG ++ F+DNA V+++ G KG I GP+ +E D+ Sbjct: 2 IQVQSRLNVADNSGARLVQCIKVVGG----SRRRYASVGDIIVVAVKDALPTSVIKKGSVEKAVIVRVSKEYRRVDGTYIRFDDNACVVIDANGNPKGKRIFGPVARELRDM 109
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_RHOE4 (50S ribosomal protein L14 OS=Rhodococcus erythropolis (strain PR4 / NBRC 100887) GN=rplN PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.324e-11 Identity = 42/102 (41.18%), Postives = 63/102 (61.76%), Query Frame = -3 Query: 245 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKP--DLRK-KVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 541 V ADNTGAK + I V G R A +GD+++ATVK P +++K +V+ AVIVR K RR DG ++ F++NA V++ + +G+ I GP+G+E Sbjct: 8 VRVADNTGAKEILCIRVLGGSSRRY----AGIGDVIVATVKDAIPGGNIKKGEVVKAVIVRTTKERRRPDGSYIKFDENAAVLIKADSDPRGTRIFGPVGRE 105
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_GLOVI (50S ribosomal protein L14 OS=Gloeobacter violaceus GN=rplN PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.324e-11 Identity = 43/110 (39.09%), Postives = 66/110 (60.00%), Query Frame = -3 Query: 245 VNCADNTGAKNLYIISVKG--------IKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 541 ++ ADNTGA+ L I V G KG NR A VGD+V+A VK P++ + +V+ AV+VR R+ RR +G+ + F+DNA VI++ G +G+ + GP+ +E Sbjct: 8 LSVADNTGARELLCIRVLGSTVGSKGLTKGGGNRR-YAFVGDIVVAVVKDAAPNMGVKKSEVVRAVVVRTRQAIRRDNGMVIRFDDNAAVIIDKNGNPRGTRVFGPVARE 116
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_FLAPJ (50S ribosomal protein L14 OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=rplN PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.324e-11 Identity = 42/99 (42.42%), Postives = 60/99 (60.61%), Query Frame = -3 Query: 245 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 532 ADNTGAK + I V G G R S VGD ++ ++K P+ K V AV+VR +K RR DG ++ F+DNA V++N GEM+G+ + GP+ +E Sbjct: 11 ADNTGAKEVLTIRVLG--GTKRRYAS--VGDKIVVSIKDTAPNGSVKKGSVSTAVVVRTKKEVRRADGSYIRFDDNACVLLNAAGEMRGTRVFGPVARE 105
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_DESDA (50S ribosomal protein L14 OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) GN=rplN PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.324e-11 Identity = 44/108 (40.74%), Postives = 64/108 (59.26%), Query Frame = -3 Query: 245 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 559 + V +T+ ADN+GAK + I V G R A VGD+V+ +VK+ P + K VM AVIVR K RR DG ++ F+ NA V+++ +GE G+ I GP+ +E Sbjct: 2 IQVESTLQVADNSGAKKVACIKVLGGSHRRY----ASVGDIVVVSVKEAIPHSKVKKGDVMKAVIVRTAKEVRRMDGSYIKFDGNAAVLLSTQGEPIGTRIFGPVARE 105
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_CORK4 (50S ribosomal protein L14 OS=Corynebacterium kroppenstedtii (strain DSM 44385 / CCUG 35717) GN=rplN PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.324e-11 Identity = 41/102 (40.20%), Postives = 61/102 (59.80%), Query Frame = -3 Query: 236 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 532 ADNTGA+ + I V G G R A +GD+++ATVK+ P K ++ AVIVR +K RR DG ++ F++NA V++ E +G+ I GP+ +E D Sbjct: 11 ADNTGAREILCIRVLG--GSTRRF--AGIGDVIVATVKEATPGGNVKAGDIVKAVIVRAKKETRRPDGSYIRFDENAAVLIRNDNEPRGTRIFGPVARELRD 108
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_CHLPD (50S ribosomal protein L14 OS=Chlorobium phaeobacteroides (strain DSM 266) GN=rplN PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.324e-11 Identity = 41/102 (40.20%), Postives = 61/102 (59.80%), Query Frame = -3 Query: 236 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 532 ADN+GAK + I V G GR A +GD ++ ++K P +K V AV+VR K RRKDG ++ F++NA V++N +GE +G+ I GP+ +E D Sbjct: 11 ADNSGAKKVRCIHVFGGTGRRY----AALGDQIIVSIKAAVPGGVVKKKDVCKAVVVRCVKEQRRKDGSYIRFDENAVVLLNAQGEPRGTRIFGPVARELRD 108
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_ARCB4 (50S ribosomal protein L14 OS=Arcobacter butzleri (strain RM4018) GN=rplN PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.324e-11 Identity = 44/102 (43.14%), Postives = 63/102 (61.76%), Query Frame = -3 Query: 245 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 541 +N ADNTGAK + I V G G R A VGD+++A+VKK P + K V+ AV+VR K +R++G + F+DNA VI++ K E G+ I GP+ +E Sbjct: 8 LNVADNTGAKEIMCIKVLG--GSKRRY--ATVGDVIVASVKKALPTGKIKKGQVVKAVVVRTHKEVQRENGSLIRFDDNAAVILDAKREPVGTRIFGPVARE 105
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_ACIBL (50S ribosomal protein L14 OS=Acidobacteria bacterium (strain Ellin345) GN=rplN PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.324e-11 Identity = 42/110 (38.18%), Postives = 64/110 (58.18%), Query Frame = -3 Query: 245 LGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 565 + + + + ADN+GA+ L +I+ G G + A +GD+V A VK+ PD K V+ AVIVR K RRKDG ++ F+ NA V++N GE G+ + GP+ +E Sbjct: 1 MAVQMRTMLEVADNSGARKLQMINPLG--GGAGHV--AHLGDVVTAAVKEASPDGTAKKGTVVKAVIVRTHKEHRRKDGTYIRFDTNAAVLINDTGEPVGTRVFGPVARE 106
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RK14_THAPS (50S ribosomal protein L14, chloroplastic OS=Thalassiosira pseudonana GN=rpl14 PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.324e-11 Identity = 38/102 (37.25%), Postives = 60/102 (58.82%), Query Frame = -3 Query: 236 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 532 ADNTGAK + I V G + + +GD ++ VK+ P++ + V+ A+IVR K RR DG+++ F+DNA VIVN + +G+ + GP+ +E D Sbjct: 11 ADNTGAKKIMCIRVLGGNRKYGK-----IGDTIIGVVKEAIPNMPIKKSDVVRAIIVRTSKTIRRADGMYIRFDDNAAVIVNMENNPRGTRVFGPVAREIRD 107 The following BLAST results are available for this feature:
BLAST of CB304892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 356
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Sequences
The
following sequences are available for this feature:
EST sequence >CB304892 ID=CB304892; Name=CB304892; organism=Citrus sinensis; type=EST; length=618bpback to top |