CB304892

Overview
NameCB304892
Unique NameCB304892
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length618
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2659 contig Csv1_Contig2659:123..740. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_DESAH (50S ribosomal protein L14 OS=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) GN=rplN PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.259e-11
Identity = 42/99 (42.42%), Postives = 60/99 (60.61%), Query Frame = -3
Query:  245 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 532
            ADN+GAK LY I V G  G   R   A +GD+++ +VK+  P+ + K   V+ AVIVR +K   R DG  + F+DN+ VI+N   E  G+ I GP+ +E
Sbjct:   11 ADNSGAKELYCIKVLG--GSKRRY--AGIGDVIVVSVKEAIPNAKVKKGDVVKAVIVRTKKEVSRPDGSMIRFDDNSAVIINASNEPIGTRIFGPVARE 105          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_CYAA5 (50S ribosomal protein L14 OS=Cyanothece sp. (strain ATCC 51142) GN=rplN PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.259e-11
Identity = 38/105 (36.19%), Postives = 59/105 (56.19%), Query Frame = -3
Query:  236 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 541
            +N ADN+GA+ L  + V G            +GD ++A VK   P++   R  ++ AVIVR R+P  R  G+ + F+DNA VI+N  G  +G+ + GP+ +E  D
Sbjct:    8 LNVADNSGARKLMCLRVLGT----GNCRYGEIGDKIVAVVKDALPNMPIKRSDIVTAVIVRTRQPVNRASGMSIRFDDNAAVIINADGNPRGTRVFGPVARELRD 108          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_CORGL (50S ribosomal protein L14 OS=Corynebacterium glutamicum GN=rplN PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.259e-11
Identity = 41/99 (41.41%), Postives = 60/99 (60.61%), Query Frame = -3
Query:  245 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 532
            ADNTGA+ +  I V G  G   R   A +GD+++ATVK+  P    K   ++ AVIVR +K  RR DG ++ F++NA VI+    E +G+ I GP+ +E
Sbjct:   11 ADNTGAREILCIRVLG--GSTRRF--AGIGDVIVATVKEATPGGNVKSGEIVKAVIVRTKKETRRADGSYISFDENAAVIIKNDNEPRGTRIFGPVARE 105          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_CORGB (50S ribosomal protein L14 OS=Corynebacterium glutamicum (strain R) GN=rplN PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.259e-11
Identity = 41/99 (41.41%), Postives = 60/99 (60.61%), Query Frame = -3
Query:  245 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 532
            ADNTGA+ +  I V G  G   R   A +GD+++ATVK+  P    K   ++ AVIVR +K  RR DG ++ F++NA VI+    E +G+ I GP+ +E
Sbjct:   11 ADNTGAREILCIRVLG--GSTRRF--AGIGDVIVATVKEATPGGNVKSGEIVKAVIVRTKKETRRADGSYISFDENAAVIIKNDNEPRGTRIFGPVARE 105          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_COREF (50S ribosomal protein L14 OS=Corynebacterium efficiens GN=rplN PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.259e-11
Identity = 41/99 (41.41%), Postives = 60/99 (60.61%), Query Frame = -3
Query:  245 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 532
            ADNTGA+ +  I V G  G   R   A +GD+++ATVK+  P    K   ++ AVIVR +K  RR DG ++ F++NA VI+    E +G+ I GP+ +E
Sbjct:   11 ADNTGAREILCIRVLG--GSTRRF--AGIGDVIVATVKEAAPGGNVKSGEIVKAVIVRTKKETRRADGSYISFDENAAVIIKNDNEPRGTRIFGPVARE 105          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_CHLMU (50S ribosomal protein L14 OS=Chlamydia muridarum GN=rplN PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.259e-11
Identity = 43/102 (42.16%), Postives = 60/102 (58.82%), Query Frame = -3
Query:  236 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 532
            ADNTGAK +    V G     +R   A VGD+++ +V+  +PD   K   V+ AVIVR R   RRKDG  + F+ N+ VI++ KG  KG+ I GP+ +E  D
Sbjct:   11 ADNTGAKKVKCFKVLGG----SRRRYATVGDVIVCSVRDVEPDSSVKKGDVVKAVIVRTRNDIRRKDGSTLRFDTNSCVIIDDKGNPKGTRIFGPVAREIRD 108          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RK14_TOBAC (50S ribosomal protein L14, chloroplastic OS=Nicotiana tabacum GN=rpl14 PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.259e-11
Identity = 38/106 (35.85%), Postives = 65/106 (61.32%), Query Frame = -3
Query:  233 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECADL 541
            +N ADN+GA+ L  I + G   R      A +GD+++A +K+  P++   R +V+ AVIVR  K  +R +G+ + ++DNA V+++ +G  KG+ I G I +E  +L
Sbjct:    8 LNVADNSGARELMCIRIIGASNRRY----AHIGDVIVAVIKEAVPNMPLERSEVVRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELREL 109          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RK14_SOLTU (50S ribosomal protein L14, chloroplastic OS=Solanum tuberosum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.259e-11
Identity = 38/106 (35.85%), Postives = 65/106 (61.32%), Query Frame = -3
Query:  233 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECADL 541
            +N ADN+GA+ L  I + G   R      A +GD+++A +K+  P++   R +V+ AVIVR  K  +R +G+ + ++DNA V+++ +G  KG+ I G I +E  +L
Sbjct:    8 LNVADNSGARELMCIRIIGASNRRY----AHIGDVIVAVIKEAVPNMPLERSEVVRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELREL 109          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RK14_SOLLC (50S ribosomal protein L14, chloroplastic OS=Solanum lycopersicum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.259e-11
Identity = 38/106 (35.85%), Postives = 65/106 (61.32%), Query Frame = -3
Query:  233 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECADL 541
            +N ADN+GA+ L  I + G   R      A +GD+++A +K+  P++   R +V+ AVIVR  K  +R +G+ + ++DNA V+++ +G  KG+ I G I +E  +L
Sbjct:    8 LNVADNSGARELMCIRIIGASNRRY----AHIGDVIVAVIKEAVPNMPLERSEVVRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELREL 109          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RK14_SOLBU (50S ribosomal protein L14, chloroplastic OS=Solanum bulbocastanum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.259e-11
Identity = 38/106 (35.85%), Postives = 65/106 (61.32%), Query Frame = -3
Query:  233 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECADL 541
            +N ADN+GA+ L  I + G   R      A +GD+++A +K+  P++   R +V+ AVIVR  K  +R +G+ + ++DNA V+++ +G  KG+ I G I +E  +L
Sbjct:    8 LNVADNSGARELMCIRIIGASNRRY----AHIGDVIVAVIKEAVPNMPLERSEVVRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELREL 109          
The following BLAST results are available for this feature:
BLAST of CB304892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 356
Match NameE-valueIdentityDescription
RL14_DESAH2.259e-1142.4250S ribosomal protein L14 OS=Desulfobacterium auto... [more]
RL14_CYAA52.259e-1136.1950S ribosomal protein L14 OS=Cyanothece sp. (strai... [more]
RL14_CORGL2.259e-1141.4150S ribosomal protein L14 OS=Corynebacterium gluta... [more]
RL14_CORGB2.259e-1141.4150S ribosomal protein L14 OS=Corynebacterium gluta... [more]
RL14_COREF2.259e-1141.4150S ribosomal protein L14 OS=Corynebacterium effic... [more]
RL14_CHLMU2.259e-1142.1650S ribosomal protein L14 OS=Chlamydia muridarum G... [more]
RK14_TOBAC2.259e-1135.8550S ribosomal protein L14, chloroplastic OS=Nicoti... [more]
RK14_SOLTU2.259e-1135.8550S ribosomal protein L14, chloroplastic OS=Solanu... [more]
RK14_SOLLC2.259e-1135.8550S ribosomal protein L14, chloroplastic OS=Solanu... [more]
RK14_SOLBU2.259e-1135.8550S ribosomal protein L14, chloroplastic OS=Solanu... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IaR_F07 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IaR_F07 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304892 ID=CB304892; Name=CB304892; organism=Citrus sinensis; type=EST; length=618bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGATCAACAAAACTCCAAA
CTTTCATACCACTTACAAAACTAGAATAACAAAATCATACAGAAAGTTCA
CAGAAAAGCTTTACTCCTTCCTACTATGAAACTTCACCAGATTTCTTTTT
AGTGCAACAAAAAGGATGATATAGGTTATCGGTCTTGAATGGCTTAAACG
ATAGCATTGGCTGCACTTGCAATTCTCGGCCACAAATCAGCACACTCTTT
ACCAATTGGACCGGGGATGGCAGAACCCTTCATTTCTCCCTTTGGATTCA
CAATAACACCAGCATTATCTTCAAAGTACATGAAGACACCATCCTTTCTG
CGCCATGGCTTGCGCTGCCTTACAATGACGGCGGGCATCACCTTCTTCCT
AAGATCAGGCTTCCCTTTCTTCACGGTAGCCATAACCATGTCTCCAACAC
AGGCAGACGGCAAACGGTTGAGGCGACCTTTGATTCCCTTAACTGAGATG
ATGTAAAGGTTCTTTGCCCCAGTGTTGTCAGCACAGTTCACAGTTGCTGC
CACTGGCAAACCCAGTGACATCCTGAACTTGTTACCTGCTGATCCTCCAC
GTCCTCGCTTCGACATTT
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