CB304892

Overview
NameCB304892
Unique NameCB304892
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length618
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2659 contig Csv1_Contig2659:123..740. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RK14_CUSOB (50S ribosomal protein L14, plastid OS=Cuscuta obtusiflora GN=rpl14 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.951e-11
Identity = 38/106 (35.85%), Postives = 64/106 (60.38%), Query Frame = -3
Query:  233 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECADL 541
            +N ADN+GA+ +  I + G   R      A +GD+++A +K   P++   + +V+ AVIVR RK  +R +G+ + ++DNA VI++ +G  KG+ I G I +E   L
Sbjct:    8 LNVADNSGARTIMCIRIIGSSNRRY----AHIGDIIVAVIKDAVPNMTLEKSEVVRAVIVRTRKELKRDNGIILRYDDNAAVIIDKEGNPKGTRIFGAIPRELRKL 109          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RK14_CUSGR (50S ribosomal protein L14, plastid OS=Cuscuta gronovii GN=rpl14 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.951e-11
Identity = 38/106 (35.85%), Postives = 64/106 (60.38%), Query Frame = -3
Query:  233 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECADL 541
            +N ADN+GA+ +  I + G   R      A +GD+++A +K   P++   + +V+ AVIVR RK  +R +G+ + ++DNA VI++ +G  KG+ I G I +E   L
Sbjct:    8 LNVADNSGARKIMCIRIIGSSNRRY----AHIGDIIVAVIKDAVPNMTLEKSEVVRAVIVRTRKELKRDNGIILRYDDNAAVIIDKEGNPKGTRIFGAIPRELRKL 109          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RK14_ATRBE (50S ribosomal protein L14, chloroplastic OS=Atropa belladonna GN=rpl14 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.951e-11
Identity = 37/106 (34.91%), Postives = 65/106 (61.32%), Query Frame = -3
Query:  233 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECADL 541
            +N ADN+GA+ L  I + G   R      A +GD+++A +K+  P++   R +++ AVIVR  K  +R +G+ + ++DNA V+++ +G  KG+ I G I +E  +L
Sbjct:    8 LNVADNSGARELMCIRIIGASNRRY----AHIGDVIVAVIKEAVPNMPLERSEIVRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELREL 109          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_WOLSU (50S ribosomal protein L14 OS=Wolinella succinogenes GN=rplN PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.854e-11
Identity = 43/99 (43.43%), Postives = 63/99 (63.64%), Query Frame = -3
Query:  245 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 532
            ADN+GAK +  I V G  G   R   A VGD+++A+VKK  P+ + K   V+ AV+VR +K  +R +G  + F+DNA VI++ K E  G+ I GP+G+E
Sbjct:   11 ADNSGAKEVMCIKVLG--GSKRRY--ATVGDVIIASVKKALPNGKIKKGQVVKAVVVRTKKEVQRDNGSLIRFDDNAAVILDNKREPVGTRIFGPVGRE 105          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_THETN (50S ribosomal protein L14 OS=Thermoanaerobacter tengcongensis GN=rplN PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.854e-11
Identity = 40/102 (39.22%), Postives = 60/102 (58.82%), Query Frame = -3
Query:  236 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 532
            ADNTGAK +  I + G   R      + VGD+++A+VK   P     + +V+ AVIVR +K   RKDG ++ F+DNA VI+    + +G+ I GP+ +E  D
Sbjct:   11 ADNTGAKEIMCIRLLGGSNR----KYSNVGDIIVASVKSATPGGVVKKGEVVKAVIVRTKKGIARKDGTYIRFDDNAAVIIRDDKQPRGTRIFGPVARELRD 108          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_SYNR3 (50S ribosomal protein L14 OS=Synechococcus sp. (strain RCC307) GN=rplN PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.854e-11
Identity = 39/102 (38.24%), Postives = 60/102 (58.82%), Query Frame = -3
Query:  245 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 541
            +N ADN+GAK +  I V G   R      A VGD+++ATVK   P++  K   ++ AV+VR +   RR+ G  + F+DNA VI+N     +G+ + GP+ +E
Sbjct:    8 LNVADNSGAKRIQCIRVLGTNRRY-----AHVGDVIVATVKDAMPNMGVKKSDIVKAVVVRTKHTMRRETGNAIRFDDNAAVIINDDKNPRGTRVFGPVARE 104          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_MYCVP (50S ribosomal protein L14 OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=rplN PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.854e-11
Identity = 41/99 (41.41%), Postives = 58/99 (58.59%), Query Frame = -3
Query:  245 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 532
            ADNTGAK +  I V G   R      A +GD+++ATVK   P     R  V+ AV+VR  K  RR DG ++ F++NA VI+    + +G+ I GP+G+E
Sbjct:   11 ADNTGAKEILCIRVLGGSSRRY----AGIGDVIVATVKDAIPGGNVKRGDVVKAVVVRTAKERRRADGSYIKFDENAAVIIKNDNDPRGTRIFGPVGRE 105          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_MICAN (50S ribosomal protein L14 OS=Microcystis aeruginosa (strain NIES-843) GN=rplN PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.854e-11
Identity = 40/105 (38.10%), Postives = 59/105 (56.19%), Query Frame = -3
Query:  236 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 541
            +N ADN+GA+ L  + V G            +GD ++A VK   P++  K   V+ AVIVR R+  RR  G+ + F+DNA VI+N  G  KG+ + GP+ +E  D
Sbjct:    8 LNVADNSGARKLMCLRVLGT----GNCTYGGIGDKIIAVVKDAIPNMPVKKSDVVTAVIVRTRQTVRRDSGMSIRFDDNAAVIINNDGNPKGTRVFGPVARELRD 108          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_LACF3 (50S ribosomal protein L14 OS=Lactobacillus fermentum (strain IFO 3956 / LMG 18251) GN=rplN PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.854e-11
Identity = 37/102 (36.27%), Postives = 62/102 (60.78%), Query Frame = -3
Query:  236 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 532
            ADN+GA+ + +I + G     +R+ +  +GD+++ATVK+  P     +  V+ AV+VR +    RKDG ++ F++NA V++N     KG+ I GPI +E  D
Sbjct:   11 ADNSGAREILVIKILGG----SRVKTGNIGDIIVATVKQATPGGVVKKGDVVKAVVVRTKHGLHRKDGSYIKFDENAAVLINNDKSPKGTRIFGPIARELRD 108          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_DICT6 (50S ribosomal protein L14 OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=rplN PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.854e-11
Identity = 39/102 (38.24%), Postives = 61/102 (59.80%), Query Frame = -3
Query:  236 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 532
            ADNTGAK +    + G K        A VGD+++A+VK+  P    K   V+ AV++R ++  +RKDG  + F+DNA VI++ +G  KG+ + GP+ +E  D
Sbjct:   11 ADNTGAKEIMCFRILGKKR------VAQVGDIIVASVKEAVPRSNIKKGDVVYAVVIRTKRTIKRKDGSCVRFDDNAAVIIDKEGNPKGTRVFGPVARELRD 106          
The following BLAST results are available for this feature:
BLAST of CB304892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 356
Match NameE-valueIdentityDescription
RK14_CUSOB2.951e-1135.8550S ribosomal protein L14, plastid OS=Cuscuta obtu... [more]
RK14_CUSGR2.951e-1135.8550S ribosomal protein L14, plastid OS=Cuscuta gron... [more]
RK14_ATRBE2.951e-1134.9150S ribosomal protein L14, chloroplastic OS=Atropa... [more]
RL14_WOLSU3.854e-1143.4350S ribosomal protein L14 OS=Wolinella succinogene... [more]
RL14_THETN3.854e-1139.2250S ribosomal protein L14 OS=Thermoanaerobacter te... [more]
RL14_SYNR33.854e-1138.2450S ribosomal protein L14 OS=Synechococcus sp. (st... [more]
RL14_MYCVP3.854e-1141.4150S ribosomal protein L14 OS=Mycobacterium vanbaal... [more]
RL14_MICAN3.854e-1138.1050S ribosomal protein L14 OS=Microcystis aeruginos... [more]
RL14_LACF33.854e-1136.2750S ribosomal protein L14 OS=Lactobacillus ferment... [more]
RL14_DICT63.854e-1138.2450S ribosomal protein L14 OS=Dictyoglomus thermoph... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IaR_F07 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IaR_F07 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304892 ID=CB304892; Name=CB304892; organism=Citrus sinensis; type=EST; length=618bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGATCAACAAAACTCCAAA
CTTTCATACCACTTACAAAACTAGAATAACAAAATCATACAGAAAGTTCA
CAGAAAAGCTTTACTCCTTCCTACTATGAAACTTCACCAGATTTCTTTTT
AGTGCAACAAAAAGGATGATATAGGTTATCGGTCTTGAATGGCTTAAACG
ATAGCATTGGCTGCACTTGCAATTCTCGGCCACAAATCAGCACACTCTTT
ACCAATTGGACCGGGGATGGCAGAACCCTTCATTTCTCCCTTTGGATTCA
CAATAACACCAGCATTATCTTCAAAGTACATGAAGACACCATCCTTTCTG
CGCCATGGCTTGCGCTGCCTTACAATGACGGCGGGCATCACCTTCTTCCT
AAGATCAGGCTTCCCTTTCTTCACGGTAGCCATAACCATGTCTCCAACAC
AGGCAGACGGCAAACGGTTGAGGCGACCTTTGATTCCCTTAACTGAGATG
ATGTAAAGGTTCTTTGCCCCAGTGTTGTCAGCACAGTTCACAGTTGCTGC
CACTGGCAAACCCAGTGACATCCTGAACTTGTTACCTGCTGATCCTCCAC
GTCCTCGCTTCGACATTT
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